Wall clock time and date at job start Sun Mar 29 2020 22:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31398 * 1 3 3 Si 1.86800 * 119.99893 * 2 1 4 4 H 1.48509 * 109.46907 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48496 * 109.47574 * 59.99977 * 3 2 1 7 7 C 1.39004 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99884 * 179.73031 * 7 2 1 9 9 N 1.36885 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00025 * 179.73055 * 9 7 2 11 11 O 1.21741 * 120.00078 * 359.97438 * 10 9 7 12 12 C 1.46456 * 119.99635 * 180.02562 * 10 9 7 13 13 C 1.35987 * 125.41956 * 179.97438 * 12 10 9 14 14 C 1.39142 * 113.98348 * 179.97438 * 13 12 10 15 15 C 1.34394 * 114.00362 * 0.02562 * 14 13 12 16 16 S 1.71483 * 111.09383 * 359.74007 * 15 14 13 17 17 C 1.52380 * 110.38014 * 179.97438 * 15 14 13 18 18 C 1.54166 * 104.90185 * 342.44938 * 17 15 14 19 19 C 1.52822 * 136.18635 * 180.02562 * 14 13 12 20 20 H 0.97009 * 119.99748 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99785 * 359.72820 * 9 7 2 22 22 H 1.08006 * 123.00826 * 359.97438 * 13 12 10 23 23 H 1.08995 * 110.35274 * 223.59111 * 17 15 14 24 24 H 1.08994 * 110.44022 * 101.35172 * 17 15 14 25 25 H 1.08994 * 110.95959 * 268.60137 * 18 17 15 26 26 H 1.09000 * 110.98648 * 144.87481 * 18 17 15 27 27 H 1.09001 * 110.33353 * 316.53567 * 19 14 13 28 28 H 1.09001 * 110.32805 * 78.65838 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0090 -1.2038 -0.0005 8 1 3.0890 -1.2038 -0.0049 9 7 1.3246 -2.3893 -0.0005 10 6 1.9984 -3.5565 -0.0065 11 8 3.2158 -3.5565 -0.0125 12 6 1.2661 -4.8248 -0.0071 13 6 1.8317 -6.0614 -0.0134 14 6 0.9108 -7.1045 -0.0119 15 6 -0.3714 -6.7018 -0.0050 16 16 -0.4808 -4.9906 0.0071 17 6 -1.3057 -7.9056 -0.0045 18 6 -0.4286 -9.0884 -0.4611 19 6 0.9741 -8.6314 -0.0160 20 1 -0.4850 0.8401 -0.0004 21 1 0.3545 -2.3893 0.0038 22 1 2.9000 -6.2198 -0.0190 23 1 -2.1259 -7.7492 -0.7050 24 1 -1.6935 -8.0860 0.9980 25 1 -0.4730 -9.2118 -1.5431 26 1 -0.7187 -10.0083 0.0465 27 1 1.7278 -8.9773 -0.7234 28 1 1.1951 -9.0040 0.9842 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037714276.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:38 Heat of formation + Delta-G solvation = -32.803702 kcal Electronic energy + Delta-G solvation = -13886.243575 eV Core-core repulsion = 11413.423913 eV Total energy + Delta-G solvation = -2472.819662 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.61600 -39.82416 -36.24403 -35.14404 -33.45918 -29.55212 -29.16220 -27.05862 -24.30561 -22.59181 -21.13102 -20.32786 -19.15789 -18.77913 -16.98781 -16.79736 -16.42718 -15.91615 -15.64381 -15.36637 -14.73310 -13.75393 -13.67006 -13.62824 -13.23811 -12.99716 -12.85072 -12.63719 -12.54999 -12.12989 -11.99781 -11.76691 -11.71970 -11.59507 -10.73093 -10.22046 -9.59299 -9.27370 -8.61437 -6.08125 -0.37279 0.43907 1.05353 1.29549 1.39018 1.49101 1.54765 2.22563 2.28090 2.96370 3.14688 3.62768 3.68260 4.17532 4.23062 4.30953 4.44629 4.70606 4.85781 4.94781 4.98600 5.01991 5.20112 5.28072 5.34181 5.41337 5.49558 5.84262 6.38541 6.92968 7.29910 7.84978 8.56269 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.058618 B = 0.005812 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.553110 B = 4816.625174 C = 5260.143619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.009 4.009 3 Si 1.004 2.996 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.341 4.341 8 H 0.087 0.913 9 N -0.551 5.551 10 C 0.495 3.505 11 O -0.631 6.631 12 C -0.263 4.263 13 C -0.069 4.069 14 C -0.150 4.150 15 C -0.232 4.232 16 S 0.210 5.790 17 C -0.041 4.041 18 C -0.108 4.108 19 C -0.055 4.055 20 H 0.285 0.715 21 H 0.395 0.605 22 H 0.136 0.864 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -15.193 -0.099 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.210 4.210 3 Si 0.826 3.174 4 H -0.195 1.195 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.470 4.470 8 H 0.105 0.895 9 N -0.185 5.185 10 C 0.283 3.717 11 O -0.521 6.521 12 C -0.383 4.383 13 C -0.102 4.102 14 C -0.162 4.162 15 C -0.352 4.352 16 S 0.479 5.521 17 C -0.080 4.080 18 C -0.146 4.146 19 C -0.093 4.093 20 H 0.095 0.905 21 H 0.230 0.770 22 H 0.153 0.847 23 H 0.107 0.893 24 H 0.116 0.884 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.219 -13.918 -0.084 15.679 hybrid contribution 1.390 0.264 0.007 1.415 sum -5.829 -13.654 -0.077 14.846 Atomic orbital electron populations 1.69676 1.07144 1.30133 1.47907 1.26279 0.96683 1.02882 0.95206 0.84720 0.77987 0.75919 0.78770 1.19510 1.19010 1.18982 1.19880 0.93207 0.83487 1.50461 0.89501 1.41848 1.09228 1.04781 1.62647 1.17150 0.86926 0.83133 0.84478 1.90587 1.14599 1.87494 1.59429 1.24304 0.98487 0.97268 1.18227 1.20282 1.01045 0.89664 0.99255 1.20696 0.91469 0.98394 1.05621 1.26201 1.01689 0.99101 1.08198 1.82858 1.00446 0.99020 1.69731 1.21053 0.95983 0.87463 1.03547 1.22325 0.92268 0.97692 1.02324 1.21122 0.99486 0.85719 1.03022 0.90515 0.77016 0.84668 0.89319 0.88361 0.90154 0.87129 0.90077 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.55 13.05 21.67 0.28 -49.27 15 2 C -0.01 -0.48 5.50 84.94 0.47 -0.02 15 3 Si 1.00 42.86 29.55 68.60 2.03 44.89 15 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 6 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 7 C -0.34 -20.22 9.68 84.09 0.81 -19.40 15 8 H 0.09 5.42 7.15 -2.91 -0.02 5.40 15 9 N -0.55 -31.06 5.27 -310.81 -1.64 -32.70 15 10 C 0.49 27.26 7.73 86.38 0.67 27.93 15 11 O -0.63 -38.98 16.40 -4.48 -0.07 -39.06 15 12 C -0.26 -11.68 6.41 23.89 0.15 -11.53 15 13 C -0.07 -2.67 10.00 21.96 0.22 -2.45 15 14 C -0.15 -4.50 6.49 -19.84 -0.13 -4.62 15 15 C -0.23 -6.59 7.10 25.35 0.18 -6.41 15 16 S 0.21 7.37 22.15 -56.49 -1.25 6.12 15 17 C -0.04 -0.74 6.81 30.78 0.21 -0.53 15 18 C -0.11 -1.50 7.11 31.36 0.22 -1.28 15 19 C -0.05 -1.06 6.81 30.90 0.21 -0.85 15 20 H 0.29 14.22 8.31 -92.70 -0.77 13.45 15 21 H 0.40 21.17 7.00 -92.70 -0.65 20.53 15 22 H 0.14 5.32 8.05 -2.91 -0.02 5.30 15 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.10 1.47 8.14 -2.39 -0.02 1.45 15 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 15 26 H 0.11 0.91 8.14 -2.39 -0.02 0.89 15 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 28 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15 Total: -1.00 -70.70 260.72 2.90 -67.80 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.54 Total: 21.38 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 3.02 Total: -19.16 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.36 Total: -81.97 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.07 Total: -39.06 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -1.25 Total: 6.12 kcal Total: -70.70 2.90 -67.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714276.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.997 kcal (2) G-P(sol) polarization free energy of solvation -70.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds