Wall clock time and date at job start Sun Mar 29 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00235 * 2 1 4 4 H 1.48492 * 109.47308 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46729 * 299.99757 * 3 2 1 6 6 H 1.48501 * 109.47326 * 59.99522 * 3 2 1 7 7 C 1.37875 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47115 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.35898 * 116.99940 * 179.97438 * 11 10 9 13 13 C 1.38747 * 120.05546 * 0.02562 * 12 11 10 14 14 C 1.38125 * 119.94590 * 179.97438 * 13 12 11 15 15 C 1.38289 * 120.05159 * 359.97438 * 14 13 12 16 16 C 1.38243 * 120.11362 * 359.97438 * 15 14 13 17 17 C 1.38163 * 120.05442 * 0.02562 * 16 15 14 18 18 N 1.48007 * 120.02705 * 180.02562 * 17 16 15 19 19 O 1.21798 * 120.00276 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00116 * 179.97438 * 18 17 16 21 21 H 0.96997 * 119.99513 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47036 * 59.99603 * 9 7 2 23 23 H 1.08998 * 109.46929 * 300.00065 * 9 7 2 24 24 H 1.08999 * 109.47276 * 60.00016 * 10 9 7 25 25 H 1.08995 * 109.46990 * 300.00058 * 10 9 7 26 26 H 1.08000 * 120.03041 * 359.95195 * 13 12 11 27 27 H 1.07993 * 119.97844 * 179.72247 * 14 13 12 28 28 H 1.08004 * 119.94567 * 179.97438 * 15 14 13 29 29 H 1.08001 * 119.97538 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5307 -4.8997 0.0011 12 6 2.2709 -6.0394 0.0007 13 6 3.6565 -5.9681 0.0002 14 6 4.4066 -7.1280 0.0003 15 6 3.7775 -8.3595 0.0013 16 6 2.3971 -8.4332 0.0029 17 6 1.6424 -7.2759 0.0028 18 7 0.1644 -7.3555 0.0051 19 8 -0.3870 -8.4415 0.0065 20 8 -0.5004 -6.3350 0.0055 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6044 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 4.1483 -5.0066 -0.0006 27 1 5.4851 -7.0731 -0.0046 28 1 4.3657 -9.2653 0.0010 29 1 1.9081 -9.3962 0.0033 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037975812.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:55 Heat of formation + Delta-G solvation = -25.360247 kcal Electronic energy + Delta-G solvation = -16119.628167 eV Core-core repulsion = 13204.378407 eV Total energy + Delta-G solvation = -2915.249761 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.83969 -40.05301 -37.67866 -36.06520 -33.49744 -32.05746 -30.88402 -29.71041 -26.21423 -25.35019 -22.91787 -22.27507 -20.84658 -19.26974 -18.28030 -17.76811 -17.19290 -16.26640 -15.85033 -15.66905 -15.30726 -14.70273 -14.48976 -13.37891 -13.22100 -12.46825 -12.29283 -11.92129 -11.80945 -11.17754 -11.12782 -11.00760 -10.73784 -10.71023 -10.60465 -10.11110 -9.79057 -9.68353 -9.36288 -8.57539 -8.48004 -6.14482 -4.20764 0.06543 0.98683 1.55069 1.72765 3.19031 3.23138 3.26297 3.31556 3.34704 4.31221 4.36781 4.49727 4.76555 4.77572 4.97849 5.21669 5.34144 5.58978 5.71746 5.77458 5.82931 5.96974 6.21006 6.46969 6.67461 7.23388 7.56729 7.57954 7.86767 8.03762 8.14760 8.84755 9.43932 10.96711 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.005612 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.498318 B = 4988.548665 C = 5769.600850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.056 3.944 11 O -0.276 6.276 12 C 0.211 3.789 13 C -0.218 4.218 14 C -0.028 4.028 15 C -0.172 4.172 16 C -0.022 4.022 17 C -0.095 4.095 18 N 0.036 4.964 19 O -0.198 6.198 20 O -0.124 6.124 21 H 0.264 0.736 22 H 0.032 0.968 23 H 0.033 0.967 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.154 0.846 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.696 -14.695 -0.006 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.017 4.017 11 O -0.186 6.186 12 C 0.159 3.841 13 C -0.237 4.237 14 C -0.046 4.046 15 C -0.191 4.191 16 C -0.041 4.041 17 C -0.180 4.180 18 N 0.553 4.447 19 O -0.403 6.403 20 O -0.348 6.348 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.171 0.829 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.004 -14.547 -0.007 17.655 hybrid contribution 0.313 0.985 -0.001 1.033 sum 10.317 -13.563 -0.008 17.041 Atomic orbital electron populations 1.69990 1.06076 1.27004 1.49108 1.24992 0.94910 0.99395 0.94815 0.86428 0.79856 0.83256 0.77800 1.19704 1.20782 1.20787 1.20951 0.92971 0.90053 1.52925 0.92330 1.19152 0.94016 0.88349 0.99566 1.23679 0.97654 0.80224 1.00179 1.86543 1.35629 1.12862 1.83520 1.18946 0.90689 0.86618 0.87852 1.21499 0.91369 1.01368 1.09436 1.21384 1.00814 0.91578 0.90867 1.21000 0.92898 0.98719 1.06525 1.20872 0.94023 0.96884 0.92324 1.20581 0.80131 0.94187 1.23083 1.43353 1.03089 1.00516 0.97768 1.94463 1.73365 1.16652 1.55809 1.94684 1.63896 1.24737 1.51493 0.92610 0.94923 0.94912 0.92344 0.92334 0.82887 0.84131 0.83969 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 13.29 55.43 0.74 -25.33 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 7 C -0.53 -14.35 9.11 -34.44 -0.31 -14.66 15 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 15 9 C 0.03 0.67 5.34 -27.88 -0.15 0.52 15 10 C 0.06 1.12 4.68 37.16 0.17 1.29 15 11 O -0.28 -5.52 8.15 -41.54 -0.34 -5.85 15 12 C 0.21 3.44 6.67 -39.22 -0.26 3.18 15 13 C -0.22 -2.72 9.04 -39.43 -0.36 -3.08 15 14 C -0.03 -0.26 10.04 -39.60 -0.40 -0.66 15 15 C -0.17 -1.53 10.04 -39.56 -0.40 -1.93 15 16 C -0.02 -0.26 9.55 -39.61 -0.38 -0.63 15 17 C -0.09 -1.50 6.87 -79.81 -0.55 -2.05 15 18 N 0.04 0.67 4.45 34.03 0.15 0.82 15 19 O -0.20 -3.55 18.45 -29.46 -0.54 -4.09 15 20 O -0.12 -2.65 17.24 -36.49 -0.63 -3.28 15 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 22 H 0.03 0.90 8.14 -51.93 -0.42 0.47 15 23 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.06 1.06 7.66 -51.93 -0.40 0.67 15 25 H 0.06 1.07 7.66 -51.93 -0.40 0.67 15 26 H 0.15 1.77 6.30 -52.49 -0.33 1.44 15 27 H 0.14 0.81 8.06 -52.49 -0.42 0.39 15 28 H 0.14 0.78 8.06 -52.48 -0.42 0.36 15 29 H 0.15 1.48 7.61 -52.49 -0.40 1.08 15 LS Contribution 266.92 15.07 4.02 4.02 Total: -1.00 -31.46 266.92 -7.10 -38.56 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: -2.76 Total: -4.27 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -2.73 Total: -16.39 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.89 Total: -24.51 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -1.51 Total: -13.23 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.46 -7.10 -38.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037975812.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.204 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds