Wall clock time and date at job start Sun Mar 29 2020 22:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00235 * 2 1 4 4 H 1.48492 * 109.47308 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46729 * 299.99757 * 3 2 1 6 6 H 1.48501 * 109.47326 * 59.99522 * 3 2 1 7 7 C 1.37875 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47115 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.35898 * 116.99940 * 179.97438 * 11 10 9 13 13 C 1.38747 * 120.05546 * 0.02562 * 12 11 10 14 14 C 1.38125 * 119.94590 * 179.97438 * 13 12 11 15 15 C 1.38289 * 120.05159 * 359.97438 * 14 13 12 16 16 C 1.38243 * 120.11362 * 359.97438 * 15 14 13 17 17 C 1.38163 * 120.05442 * 0.02562 * 16 15 14 18 18 N 1.48007 * 120.02705 * 180.02562 * 17 16 15 19 19 O 1.21798 * 120.00276 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00116 * 179.97438 * 18 17 16 21 21 H 0.96997 * 119.99513 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47036 * 59.99603 * 9 7 2 23 23 H 1.08998 * 109.46929 * 300.00065 * 9 7 2 24 24 H 1.08999 * 109.47276 * 60.00016 * 10 9 7 25 25 H 1.08995 * 109.46990 * 300.00058 * 10 9 7 26 26 H 1.08000 * 120.03041 * 359.95195 * 13 12 11 27 27 H 1.07993 * 119.97844 * 179.72247 * 14 13 12 28 28 H 1.08004 * 119.94567 * 179.97438 * 15 14 13 29 29 H 1.08001 * 119.97538 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5307 -4.8997 0.0011 12 6 2.2709 -6.0394 0.0007 13 6 3.6565 -5.9681 0.0002 14 6 4.4066 -7.1280 0.0003 15 6 3.7775 -8.3595 0.0013 16 6 2.3971 -8.4332 0.0029 17 6 1.6424 -7.2759 0.0028 18 7 0.1644 -7.3555 0.0051 19 8 -0.3870 -8.4415 0.0065 20 8 -0.5004 -6.3350 0.0055 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8719 -3.6044 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 4.1483 -5.0066 -0.0006 27 1 5.4851 -7.0731 -0.0046 28 1 4.3657 -9.2653 0.0010 29 1 1.9081 -9.3962 0.0033 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037975812.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:54 Heat of formation + Delta-G solvation = -44.458537 kcal Electronic energy + Delta-G solvation = -16120.456331 eV Core-core repulsion = 13204.378407 eV Total energy + Delta-G solvation = -2916.077925 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.18361 -41.26383 -38.85340 -37.49556 -35.51666 -33.18930 -32.40940 -31.05682 -27.51774 -27.10750 -24.36005 -23.36604 -22.47184 -20.52074 -19.66245 -19.10800 -18.57414 -18.15933 -17.14259 -17.05558 -16.47138 -16.17174 -15.57148 -14.65781 -14.60231 -14.35697 -13.39546 -13.33774 -13.11738 -12.75741 -12.65510 -12.57929 -12.49027 -12.21525 -12.04454 -11.77491 -11.65511 -11.41183 -10.66833 -10.62489 -9.63603 -8.26940 -6.42179 -1.14019 0.04246 0.35260 0.50275 1.40826 1.42433 1.55454 1.94268 2.34389 2.40844 3.07669 3.34320 3.59057 3.82906 3.99088 4.06861 4.17505 4.17605 4.50468 4.65268 4.80001 4.99815 5.14643 5.24387 5.28621 5.42107 5.48647 5.68528 6.00766 6.15141 6.56855 6.73862 7.28663 8.86534 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.005612 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.498318 B = 4988.548665 C = 5769.600850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.979 3.021 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.027 3.973 10 C 0.075 3.925 11 O -0.315 6.315 12 C 0.173 3.827 13 C -0.222 4.222 14 C -0.004 4.004 15 C -0.144 4.144 16 C -0.024 4.024 17 C -0.118 4.118 18 N 0.039 4.961 19 O -0.160 6.160 20 O -0.226 6.226 21 H 0.266 0.734 22 H -0.006 1.006 23 H -0.006 1.006 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.162 0.838 27 H 0.191 0.809 28 H 0.194 0.806 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.226 -16.579 -0.010 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.803 3.197 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.097 0.903 9 C -0.010 4.010 10 C 0.001 3.999 11 O -0.226 6.226 12 C 0.123 3.877 13 C -0.241 4.241 14 C -0.022 4.022 15 C -0.162 4.162 16 C -0.042 4.042 17 C -0.204 4.204 18 N 0.547 4.453 19 O -0.380 6.380 20 O -0.426 6.426 21 H 0.075 0.925 22 H 0.013 0.987 23 H 0.013 0.987 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.179 0.821 27 H 0.208 0.792 28 H 0.211 0.789 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 14.507 -16.271 -0.010 21.799 hybrid contribution -0.948 1.194 0.000 1.525 sum 13.559 -15.076 -0.010 20.277 Atomic orbital electron populations 1.70162 1.08296 1.28190 1.50531 1.26118 0.95781 1.03969 0.94176 0.85188 0.79205 0.77641 0.77699 1.17536 1.20473 1.20483 1.21424 0.94006 0.90565 1.52135 0.90332 1.18961 0.94580 0.91535 0.95918 1.23197 0.95636 0.79170 1.01851 1.86458 1.37077 1.13794 1.85264 1.19379 0.92359 0.85329 0.90659 1.21766 0.89511 1.03525 1.09321 1.22013 1.03006 0.90128 0.87014 1.21663 0.91572 1.00600 1.02380 1.21350 0.95280 0.95952 0.91665 1.21026 0.77840 0.95845 1.25680 1.43856 1.04735 0.99900 0.96765 1.94376 1.74534 1.16348 1.52767 1.94710 1.65468 1.25369 1.57055 0.92496 0.98741 0.98736 0.90504 0.90487 0.82055 0.79179 0.78855 0.80848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.29 21.45 0.28 -57.36 15 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 15 3 Si 0.98 43.00 29.54 68.60 2.03 45.03 15 4 H -0.25 -10.14 7.11 99.48 0.71 -9.44 15 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 6 H -0.28 -12.04 7.11 99.48 0.71 -11.34 15 7 C -0.54 -30.10 9.11 25.60 0.23 -29.86 15 8 H 0.08 3.94 7.74 -2.91 -0.02 3.91 15 9 C 0.03 1.50 5.34 29.85 0.16 1.66 15 10 C 0.07 3.10 4.68 71.98 0.34 3.44 15 11 O -0.31 -13.47 8.15 -71.25 -0.58 -14.06 15 12 C 0.17 5.67 6.67 22.50 0.15 5.82 15 13 C -0.22 -4.92 9.04 22.36 0.20 -4.72 15 14 C 0.00 -0.05 10.04 22.25 0.22 0.18 15 15 C -0.14 -1.63 10.04 22.28 0.22 -1.40 15 16 C -0.02 -0.46 9.55 22.25 0.21 -0.25 15 17 C -0.12 -3.71 6.87 36.47 0.25 -3.46 15 18 N 0.04 1.52 4.45 -46.24 -0.21 1.31 15 19 O -0.16 -5.78 18.45 18.89 0.35 -5.43 15 20 O -0.23 -10.74 17.24 25.61 0.44 -10.29 15 21 H 0.27 15.34 8.31 -92.71 -0.77 14.57 15 22 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 23 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 24 H 0.08 2.82 7.66 -2.39 -0.02 2.80 15 25 H 0.08 2.82 7.66 -2.39 -0.02 2.80 15 26 H 0.16 3.25 6.30 -2.91 -0.02 3.23 15 27 H 0.19 0.60 8.06 -2.91 -0.02 0.58 15 28 H 0.19 0.40 8.06 -2.91 -0.02 0.37 15 29 H 0.17 2.64 7.61 -2.91 -0.02 2.62 15 Total: -1.00 -76.96 266.92 5.93 -71.03 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: 1.16 Total: -1.97 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 2.45 Total: -28.26 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.08 Total: -56.05 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: 0.21 Total: -29.78 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -76.96 5.93 -71.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037975812.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.567 kcal (2) G-P(sol) polarization free energy of solvation -76.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds