Wall clock time and date at job start Sun Mar 29 2020 21:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47302 * 15.56964 * 3 2 1 5 5 N 1.46904 * 109.47345 * 180.02562 * 4 3 2 6 6 C 1.46893 * 111.00194 * 164.06532 * 5 4 3 7 7 C 1.50703 * 109.47370 * 288.33575 * 6 5 4 8 8 H 1.08004 * 119.99886 * 4.75524 * 7 6 5 9 9 C 1.37878 * 120.00477 * 184.74614 * 7 6 5 10 10 N 1.31512 * 120.00165 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99629 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47019 * 89.99909 * 11 9 7 13 13 H 1.48497 * 109.46977 * 209.99514 * 11 9 7 14 14 H 1.48500 * 109.47277 * 329.99735 * 11 9 7 15 15 C 1.46899 * 110.99560 * 288.02100 * 5 4 3 16 16 C 1.53002 * 109.47172 * 294.99809 * 15 5 4 17 17 C 1.52999 * 109.47181 * 180.02562 * 16 15 5 18 18 C 1.53001 * 109.47005 * 60.00004 * 17 16 15 19 19 C 1.52995 * 109.47295 * 299.99752 * 18 17 16 20 20 C 1.52999 * 109.46892 * 60.00178 * 19 18 17 21 21 H 1.08999 * 109.47533 * 255.56142 * 3 2 1 22 22 H 1.09011 * 109.47166 * 135.56957 * 3 2 1 23 23 H 1.09000 * 109.47501 * 59.99943 * 4 3 2 24 24 H 1.08996 * 109.46763 * 299.99778 * 4 3 2 25 25 H 1.09000 * 109.47343 * 48.33763 * 6 5 4 26 26 H 1.09000 * 109.47174 * 168.33761 * 6 5 4 27 27 H 0.96992 * 119.99901 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.47415 * 55.00355 * 15 5 4 29 29 H 1.09002 * 109.47042 * 300.00147 * 16 15 5 30 30 H 1.08991 * 109.47297 * 60.00163 * 16 15 5 31 31 H 1.08992 * 109.46967 * 299.99743 * 17 16 15 32 32 H 1.08998 * 109.47258 * 179.97438 * 17 16 15 33 33 H 1.09007 * 109.47087 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.47451 * 60.00136 * 18 17 16 35 35 H 1.09002 * 109.47184 * 300.00547 * 19 18 17 36 36 H 1.09000 * 109.47610 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.46999 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47402 * 60.00359 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3886 -0.3872 5 7 4.5877 -1.3881 -0.3866 6 6 5.1146 -2.7593 -0.3778 7 6 4.8770 -3.3802 0.9746 8 1 4.3166 -2.8421 1.7249 9 6 5.3749 -4.6352 1.2542 10 7 5.1671 -5.1772 2.4343 11 14 6.3446 -5.5656 -0.0433 12 1 7.7869 -5.2364 0.0860 13 1 6.1512 -7.0256 0.1465 14 1 5.8666 -5.1743 -1.3937 15 6 5.1142 -0.6290 -1.5287 16 6 4.7286 -1.3338 -2.8308 17 6 5.2776 -0.5435 -4.0204 18 6 6.8019 -0.4602 -3.9176 19 6 7.1875 0.2445 -2.6155 20 6 6.6385 -0.5458 -1.4260 21 1 2.9713 0.2571 0.9952 22 1 2.9710 0.7348 -0.7195 23 1 2.7555 -1.6450 -1.3824 24 1 2.7557 -2.1226 0.3323 25 1 4.6076 -3.3483 -1.1421 26 1 6.1845 -2.7387 -0.5853 27 1 5.5177 -6.0598 2.6311 28 1 4.6939 0.3766 -1.5215 29 1 5.1491 -2.3394 -2.8380 30 1 3.6428 -1.3935 -2.9039 31 1 4.8575 0.4622 -4.0134 32 1 5.0033 -1.0457 -4.9480 33 1 7.1930 0.1024 -4.7653 34 1 7.2220 -1.4660 -3.9246 35 1 6.7673 1.2503 -2.6085 36 1 8.2734 0.3042 -2.5424 37 1 6.9137 -0.0439 -0.4983 38 1 7.0587 -1.5516 -1.4329 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041214239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:34 Heat of formation + Delta-G solvation = 10.807205 kcal Electronic energy + Delta-G solvation = -17242.390687 eV Core-core repulsion = 14698.094116 eV Total energy + Delta-G solvation = -2544.296571 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26992 -36.67172 -35.46094 -32.63766 -31.27622 -30.52011 -29.19793 -26.66341 -23.45229 -22.33784 -22.18720 -20.38348 -18.62949 -17.21864 -16.97882 -15.67973 -14.88272 -14.65955 -14.34758 -14.00491 -13.89441 -13.60010 -13.40652 -12.81348 -12.76280 -12.45793 -12.13581 -12.06111 -11.75509 -11.67000 -11.20999 -11.16627 -10.94252 -10.71738 -10.58332 -10.39051 -10.13412 -9.99232 -9.83377 -9.79320 -9.25542 -8.57510 -7.42668 -6.07197 -4.04079 2.96009 3.00799 3.25609 3.34008 3.34610 4.14539 4.39526 4.73252 4.88045 4.95787 5.15588 5.26065 5.32955 5.40380 5.45762 5.50360 5.65402 5.68986 5.71203 5.76653 5.85218 5.97167 6.12007 6.18198 6.24004 6.28099 6.36470 6.40623 6.52983 6.63179 6.66811 6.84232 6.94338 7.57936 7.77653 7.83412 7.96859 8.62124 9.01922 9.54675 11.06003 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.010520 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.251708 B = 2660.851381 C = 4173.239003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.218 3.782 3 C -0.026 4.026 4 C 0.061 3.939 5 N -0.518 5.518 6 C 0.161 3.839 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.871 3.129 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.082 3.918 16 C -0.158 4.158 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.114 4.114 21 H 0.117 0.883 22 H 0.100 0.900 23 H 0.035 0.965 24 H 0.096 0.904 25 H -0.010 1.010 26 H 0.033 0.967 27 H 0.263 0.737 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 10.443 -11.186 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.099 4.099 3 C -0.067 4.067 4 C -0.069 4.069 5 N -0.240 5.240 6 C 0.035 3.965 7 C -0.548 4.548 8 H 0.099 0.901 9 C -0.133 4.133 10 N -0.538 5.538 11 Si 0.698 3.302 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.027 4.027 16 C -0.197 4.197 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.152 4.152 21 H 0.135 0.865 22 H 0.118 0.882 23 H 0.053 0.947 24 H 0.114 0.886 25 H 0.008 0.992 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.604 10.496 -10.619 15.017 hybrid contribution 0.745 -1.121 -1.355 1.910 sum 2.348 9.375 -11.974 15.388 Atomic orbital electron populations 1.81169 1.13256 1.09165 1.09725 1.29366 0.95439 0.92638 0.92482 1.19386 0.80490 1.00957 1.05834 1.21954 0.89555 0.94544 1.00832 1.62126 1.05258 1.17489 1.39108 1.20228 0.95114 0.83710 0.97476 1.21054 1.35026 1.00863 0.97812 0.90084 1.24885 0.95996 0.97315 0.95061 1.69884 1.46264 1.16655 1.21029 0.86935 0.81020 0.79479 0.82776 1.20127 1.21284 1.19287 1.21766 0.95394 0.97316 0.88268 1.22290 1.00691 1.00600 0.96118 1.21452 0.95614 1.00092 0.97908 1.21551 0.96055 1.00764 0.97441 1.21522 1.00146 0.99027 0.94747 1.21631 0.94690 1.01065 0.97782 0.86508 0.88167 0.94730 0.88596 0.99243 0.94943 0.92679 0.90803 0.91490 0.92051 0.92293 0.92712 0.92615 0.92168 0.92256 0.92265 0.91016 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.76 18.54 42.16 0.78 -6.98 16 2 C 0.22 3.17 15.43 -20.76 -0.32 2.85 16 3 C -0.03 -0.32 5.75 -29.52 -0.17 -0.49 16 4 C 0.06 0.98 4.63 -3.82 -0.02 0.96 16 5 N -0.52 -9.17 4.40 -228.09 -1.00 -10.17 16 6 C 0.16 3.52 2.72 -4.98 -0.01 3.50 16 7 C -0.51 -13.57 9.01 -34.44 -0.31 -13.88 16 8 H 0.08 2.35 7.71 -52.48 -0.40 1.94 16 9 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 11 Si 0.87 20.78 27.38 -169.99 -4.65 16.13 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.13 6.68 56.52 0.38 -5.76 16 15 C 0.08 1.16 2.12 -67.71 -0.14 1.02 16 16 C -0.16 -2.19 4.57 -26.73 -0.12 -2.31 16 17 C -0.11 -1.27 5.92 -26.73 -0.16 -1.43 16 18 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 19 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 20 C -0.11 -1.60 5.05 -26.73 -0.14 -1.74 16 21 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 22 H 0.10 1.00 6.68 -51.92 -0.35 0.65 16 23 H 0.03 0.54 5.98 -51.93 -0.31 0.23 16 24 H 0.10 1.83 6.94 -51.93 -0.36 1.47 16 25 H -0.01 -0.23 6.52 -51.93 -0.34 -0.57 16 26 H 0.03 0.72 4.85 -51.93 -0.25 0.47 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.07 0.91 6.53 -51.93 -0.34 0.57 16 29 H 0.07 1.08 6.75 -51.93 -0.35 0.72 16 30 H 0.06 0.84 6.30 -51.93 -0.33 0.51 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.10 6.13 -51.93 -0.32 0.78 16 LS Contribution 295.51 15.07 4.45 4.45 Total: -1.00 -29.72 295.51 -7.34 -37.06 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.89 Total: -1.76 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -1.80 Total: -12.64 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.55 Total: -43.24 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.65 Total: 16.13 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.72 -7.34 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041214239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.865 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds