Wall clock time and date at job start Sun Mar 29 2020 21:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47302 * 15.56964 * 3 2 1 5 5 N 1.46904 * 109.47345 * 180.02562 * 4 3 2 6 6 C 1.46893 * 111.00194 * 164.06532 * 5 4 3 7 7 C 1.50703 * 109.47370 * 288.33575 * 6 5 4 8 8 H 1.08004 * 119.99886 * 4.75524 * 7 6 5 9 9 C 1.37878 * 120.00477 * 184.74614 * 7 6 5 10 10 N 1.31512 * 120.00165 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99629 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47019 * 89.99909 * 11 9 7 13 13 H 1.48497 * 109.46977 * 209.99514 * 11 9 7 14 14 H 1.48500 * 109.47277 * 329.99735 * 11 9 7 15 15 C 1.46899 * 110.99560 * 288.02100 * 5 4 3 16 16 C 1.53002 * 109.47172 * 294.99809 * 15 5 4 17 17 C 1.52999 * 109.47181 * 180.02562 * 16 15 5 18 18 C 1.53001 * 109.47005 * 60.00004 * 17 16 15 19 19 C 1.52995 * 109.47295 * 299.99752 * 18 17 16 20 20 C 1.52999 * 109.46892 * 60.00178 * 19 18 17 21 21 H 1.08999 * 109.47533 * 255.56142 * 3 2 1 22 22 H 1.09011 * 109.47166 * 135.56957 * 3 2 1 23 23 H 1.09000 * 109.47501 * 59.99943 * 4 3 2 24 24 H 1.08996 * 109.46763 * 299.99778 * 4 3 2 25 25 H 1.09000 * 109.47343 * 48.33763 * 6 5 4 26 26 H 1.09000 * 109.47174 * 168.33761 * 6 5 4 27 27 H 0.96992 * 119.99901 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.47415 * 55.00355 * 15 5 4 29 29 H 1.09002 * 109.47042 * 300.00147 * 16 15 5 30 30 H 1.08991 * 109.47297 * 60.00163 * 16 15 5 31 31 H 1.08992 * 109.46967 * 299.99743 * 17 16 15 32 32 H 1.08998 * 109.47258 * 179.97438 * 17 16 15 33 33 H 1.09007 * 109.47087 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.47451 * 60.00136 * 18 17 16 35 35 H 1.09002 * 109.47184 * 300.00547 * 19 18 17 36 36 H 1.09000 * 109.47610 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.46999 * 179.97438 * 20 19 18 38 38 H 1.09003 * 109.47402 * 60.00359 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3886 -0.3872 5 7 4.5877 -1.3881 -0.3866 6 6 5.1146 -2.7593 -0.3778 7 6 4.8770 -3.3802 0.9746 8 1 4.3166 -2.8421 1.7249 9 6 5.3749 -4.6352 1.2542 10 7 5.1671 -5.1772 2.4343 11 14 6.3446 -5.5656 -0.0433 12 1 7.7869 -5.2364 0.0860 13 1 6.1512 -7.0256 0.1465 14 1 5.8666 -5.1743 -1.3937 15 6 5.1142 -0.6290 -1.5287 16 6 4.7286 -1.3338 -2.8308 17 6 5.2776 -0.5435 -4.0204 18 6 6.8019 -0.4602 -3.9176 19 6 7.1875 0.2445 -2.6155 20 6 6.6385 -0.5458 -1.4260 21 1 2.9713 0.2571 0.9952 22 1 2.9710 0.7348 -0.7195 23 1 2.7555 -1.6450 -1.3824 24 1 2.7557 -2.1226 0.3323 25 1 4.6076 -3.3483 -1.1421 26 1 6.1845 -2.7387 -0.5853 27 1 5.5177 -6.0598 2.6311 28 1 4.6939 0.3766 -1.5215 29 1 5.1491 -2.3394 -2.8380 30 1 3.6428 -1.3935 -2.9039 31 1 4.8575 0.4622 -4.0134 32 1 5.0033 -1.0457 -4.9480 33 1 7.1930 0.1024 -4.7653 34 1 7.2220 -1.4660 -3.9246 35 1 6.7673 1.2503 -2.6085 36 1 8.2734 0.3042 -2.5424 37 1 6.9137 -0.0439 -0.4983 38 1 7.0587 -1.5516 -1.4329 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041214239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:34 Heat of formation + Delta-G solvation = -7.740139 kcal Electronic energy + Delta-G solvation = -17243.194960 eV Core-core repulsion = 14698.094116 eV Total energy + Delta-G solvation = -2545.100844 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46801 -37.86312 -36.71786 -34.65214 -32.55577 -31.50582 -30.66377 -28.20463 -24.75354 -23.96628 -23.19878 -21.44203 -19.93655 -18.93869 -18.39397 -16.92240 -16.45547 -15.99606 -15.57965 -15.29415 -15.04786 -14.89069 -14.68510 -14.36762 -14.12164 -13.86235 -13.47129 -13.26356 -12.92892 -12.85531 -12.73622 -12.53267 -12.32028 -12.08347 -11.84733 -11.70356 -11.58882 -11.35288 -11.15398 -11.02846 -10.81296 -10.68725 -8.85874 -8.23472 -6.23969 1.34952 1.36498 1.45858 1.75808 1.83789 2.36584 2.92839 3.11893 3.54872 3.87457 3.99571 4.11130 4.27264 4.31291 4.40461 4.46778 4.60714 4.65744 4.71399 4.77064 4.87629 4.94076 4.96473 5.07293 5.14646 5.18869 5.29639 5.34835 5.37061 5.38788 5.47982 5.55194 5.66029 5.70308 6.07534 6.46120 6.61196 6.75440 6.84048 7.38959 8.93186 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.010520 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.251708 B = 2660.851381 C = 4173.239003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.241 3.759 3 C -0.011 4.011 4 C 0.062 3.938 5 N -0.527 5.527 6 C 0.174 3.826 7 C -0.507 4.507 8 H 0.044 0.956 9 C 0.007 3.993 10 N -0.950 5.950 11 Si 0.936 3.064 12 H -0.265 1.265 13 H -0.288 1.288 14 H -0.253 1.253 15 C 0.081 3.919 16 C -0.156 4.156 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.109 4.109 20 C -0.115 4.115 21 H 0.127 0.873 22 H 0.141 0.859 23 H 0.043 0.957 24 H 0.055 0.945 25 H -0.017 1.017 26 H 0.035 0.965 27 H 0.264 0.736 28 H 0.107 0.893 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 12.473 -13.677 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.075 4.075 3 C -0.051 4.051 4 C -0.067 4.067 5 N -0.249 5.249 6 C 0.047 3.953 7 C -0.546 4.546 8 H 0.062 0.938 9 C -0.189 4.189 10 N -0.591 5.591 11 Si 0.760 3.240 12 H -0.190 1.190 13 H -0.214 1.214 14 H -0.176 1.176 15 C -0.027 4.027 16 C -0.195 4.195 17 C -0.146 4.146 18 C -0.159 4.159 19 C -0.147 4.147 20 C -0.153 4.153 21 H 0.145 0.855 22 H 0.158 0.842 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.000 1.000 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.570 12.555 -13.130 18.347 hybrid contribution 0.416 -1.705 -0.531 1.833 sum 2.986 10.850 -13.661 17.699 Atomic orbital electron populations 1.81197 1.14698 1.10566 1.11396 1.29628 0.95583 0.91279 0.91048 1.19382 0.78894 0.99330 1.07515 1.21853 0.88738 0.95963 1.00179 1.62007 1.06104 1.15113 1.41658 1.19897 0.95324 0.85925 0.94115 1.21377 1.33367 1.00680 0.99136 0.93793 1.25760 0.97456 0.98581 0.97144 1.70045 1.48345 1.17287 1.23454 0.85882 0.79850 0.77713 0.80549 1.18995 1.21370 1.17648 1.21948 0.95646 0.98105 0.87041 1.22251 1.00667 0.99496 0.97114 1.21437 0.95715 1.00712 0.96693 1.21569 0.95866 1.00287 0.98148 1.21484 1.00631 0.99387 0.93227 1.21637 0.94496 1.00003 0.99193 0.85539 0.84182 0.93933 0.92621 0.99952 0.94694 0.92737 0.87494 0.94349 0.91971 0.90211 0.92129 0.90446 0.93730 0.90180 0.91550 0.91543 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.67 18.54 20.00 0.37 -16.30 16 2 C 0.24 6.64 15.43 89.44 1.38 8.02 16 3 C -0.01 -0.25 5.75 28.78 0.17 -0.08 16 4 C 0.06 1.95 4.63 86.30 0.40 2.35 16 5 N -0.53 -18.13 4.40 -875.53 -3.85 -21.98 16 6 C 0.17 7.66 2.72 85.56 0.23 7.89 16 7 C -0.51 -27.90 9.01 25.60 0.23 -27.67 16 8 H 0.04 2.68 7.71 -2.91 -0.02 2.65 16 9 C 0.01 0.42 5.47 84.66 0.46 0.88 16 10 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 11 Si 0.94 43.43 27.38 68.60 1.88 45.31 16 12 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.25 -10.97 6.68 99.48 0.66 -10.31 16 15 C 0.08 2.08 2.12 44.92 0.10 2.17 16 16 C -0.16 -3.93 4.57 30.59 0.14 -3.79 16 17 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 18 C -0.12 -2.24 5.92 30.59 0.18 -2.05 16 19 C -0.11 -2.05 5.92 30.59 0.18 -1.87 16 20 C -0.12 -2.99 5.05 30.60 0.15 -2.84 16 21 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 22 H 0.14 2.09 6.68 -2.38 -0.02 2.08 16 23 H 0.04 1.26 5.98 -2.39 -0.01 1.25 16 24 H 0.06 2.19 6.94 -2.39 -0.02 2.17 16 25 H -0.02 -0.78 6.52 -2.39 -0.02 -0.79 16 26 H 0.04 1.54 4.85 -2.39 -0.01 1.53 16 27 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.11 2.10 6.53 -2.39 -0.02 2.08 16 29 H 0.04 1.18 6.75 -2.39 -0.02 1.16 16 30 H 0.06 1.54 6.30 -2.39 -0.02 1.52 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.04 1.25 6.13 -2.39 -0.01 1.24 16 Total: -1.00 -67.19 295.51 3.50 -63.69 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.99 Total: 6.58 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 3.80 Total: -18.81 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -3.18 Total: -96.76 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.31 kcal Total: -67.19 3.50 -63.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041214239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.949 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds