Wall clock time and date at job start Sun Mar 29 2020 22:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86804 * 119.99922 * 2 1 4 4 H 1.48499 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47069 * 300.00527 * 3 2 1 6 6 H 1.48504 * 109.46828 * 60.00412 * 3 2 1 7 7 C 1.37879 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00160 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99741 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40432 * 66.46193 * 9 7 2 11 11 O 1.42098 * 106.40518 * 293.54308 * 9 7 2 12 12 N 1.65610 * 107.21758 * 180.02562 * 9 7 2 13 13 C 1.46386 * 119.52032 * 269.93500 * 12 9 7 14 14 C 1.53240 * 109.48233 * 244.93054 * 13 12 9 15 15 S 1.81738 * 108.90963 * 302.56268 * 14 13 12 16 16 C 1.81742 * 102.30929 * 54.47109 * 15 14 13 17 17 C 1.46372 * 119.64116 * 90.00157 * 12 9 7 18 18 H 0.96997 * 120.00571 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.34885 * 125.00152 * 13 12 9 20 20 H 1.09001 * 109.59156 * 5.00885 * 13 12 9 21 21 H 1.09002 * 109.58540 * 182.69742 * 14 13 12 22 22 H 1.09005 * 109.58026 * 62.42362 * 14 13 12 23 23 H 1.09001 * 109.58412 * 65.25244 * 16 15 14 24 24 H 1.08994 * 109.58072 * 185.52820 * 16 15 14 25 25 H 1.08995 * 109.47588 * 354.90709 * 17 12 9 26 26 H 1.08999 * 109.46598 * 234.91644 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2485 -3.9354 -0.0005 13 6 2.7373 -4.4657 -1.2744 14 6 2.3097 -5.9304 -1.4160 15 16 2.9531 -6.8713 -0.0005 16 6 2.3095 -5.9304 1.4149 17 6 2.7401 -4.4667 1.2716 18 1 -0.4851 0.8400 0.0004 19 1 3.8252 -4.4009 -1.2989 20 1 2.3201 -3.8843 -2.0966 21 1 2.7133 -6.3410 -2.3415 22 1 1.2216 -5.9933 -1.4323 23 1 1.2213 -5.9913 1.4298 24 1 2.7112 -6.3426 2.3406 25 1 2.3249 -3.8837 2.0937 26 1 3.8281 -4.4041 1.2952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509597.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:39 Heat of formation + Delta-G solvation = -92.860947 kcal Electronic energy + Delta-G solvation = -13710.712453 eV Core-core repulsion = 11234.899370 eV Total energy + Delta-G solvation = -2475.813083 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.028 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -36.79888 -35.43662 -34.05648 -33.13308 -31.45709 -28.82814 -26.17266 -23.45099 -21.77864 -18.92577 -17.81069 -16.49752 -15.63859 -15.36585 -15.14441 -14.40674 -13.92075 -13.88998 -13.40077 -13.33772 -12.50392 -12.39481 -12.03982 -11.43752 -11.27421 -11.24824 -10.84918 -10.62774 -10.45420 -10.39083 -10.12363 -9.55633 -9.31510 -9.05974 -8.52442 -7.49273 -6.75934 -5.38912 1.94637 2.16896 2.69630 3.01824 3.10335 3.17560 3.99472 4.34430 4.57922 5.02565 5.22170 5.30707 5.31813 5.54454 5.58459 5.81601 5.88337 5.96853 6.06230 6.19394 6.33601 6.59896 7.26360 7.43543 7.91606 8.83075 10.17730 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.049122 B = 0.008524 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.868811 B = 3283.907575 C = 3298.064420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.019 5.019 8 H 0.103 0.897 9 S 2.709 3.291 10 O -1.002 7.002 11 O -1.002 7.002 12 N -1.014 6.014 13 C 0.123 3.877 14 C -0.094 4.094 15 S -0.279 6.279 16 C -0.094 4.094 17 C 0.124 3.876 18 H 0.291 0.709 19 H 0.074 0.926 20 H 0.104 0.896 21 H 0.109 0.891 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -7.345 -0.003 9.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.122 0.878 9 S 2.811 3.189 10 O -0.992 6.992 11 O -0.992 6.992 12 N -0.849 5.849 13 C -0.005 4.005 14 C -0.244 4.244 15 S -0.054 6.054 16 C -0.244 4.244 17 C -0.004 4.004 18 H 0.101 0.899 19 H 0.092 0.908 20 H 0.122 0.878 21 H 0.128 0.872 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.935 -8.362 -0.003 10.254 hybrid contribution 0.204 2.179 -0.001 2.189 sum 6.139 -6.183 -0.004 8.713 Atomic orbital electron populations 1.69894 1.06807 1.30749 1.40050 1.24770 0.94481 1.00904 0.88439 0.86111 0.80452 0.80273 0.78619 1.18571 1.19562 1.19557 1.30601 1.06181 1.11611 1.66888 0.87835 1.00732 0.72208 0.73116 0.72890 1.93355 1.72638 1.87543 1.45670 1.93353 1.72685 1.87537 1.45638 1.58022 1.62948 1.54631 1.09255 1.21274 0.99985 0.92377 0.86841 1.23851 1.04222 0.98469 0.97858 1.86455 1.72841 1.42454 1.03626 1.23856 1.04222 0.98469 0.97854 1.21262 0.99940 0.92371 0.86847 0.89861 0.90778 0.87761 0.87229 0.89476 0.89474 0.87216 0.87797 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.49 13.19 55.43 0.73 -23.76 15 2 C 0.13 3.62 5.46 -17.82 -0.10 3.53 15 3 Si 0.92 20.22 29.54 -169.99 -5.02 15.20 15 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 15 7 C -1.02 -27.45 9.75 30.60 0.30 -27.15 15 8 H 0.10 2.57 7.81 -52.49 -0.41 2.16 15 9 S 2.71 69.88 4.92 -107.50 -0.53 69.35 15 10 O -1.00 -28.27 16.60 -57.17 -0.95 -29.21 15 11 O -1.00 -28.27 16.60 -57.17 -0.95 -29.22 15 12 N -1.01 -19.91 3.10 -114.28 -0.35 -20.27 15 13 C 0.12 2.06 6.18 -3.98 -0.02 2.03 15 14 C -0.09 -1.39 6.66 37.28 0.25 -1.14 15 15 S -0.28 -4.10 22.30 -107.50 -2.40 -6.50 15 16 C -0.09 -1.39 6.67 37.28 0.25 -1.14 15 17 C 0.12 2.06 6.18 -3.98 -0.02 2.04 15 18 H 0.29 7.55 8.31 -40.82 -0.34 7.21 15 19 H 0.07 1.08 8.14 -51.93 -0.42 0.65 15 20 H 0.10 1.83 6.97 -51.93 -0.36 1.46 15 21 H 0.11 1.31 8.14 -51.93 -0.42 0.88 15 22 H 0.09 1.37 8.14 -51.93 -0.42 0.94 15 23 H 0.09 1.37 8.14 -51.93 -0.42 0.94 15 24 H 0.11 1.31 8.14 -51.93 -0.42 0.88 15 25 H 0.10 1.82 6.97 -51.93 -0.36 1.46 15 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 247.35 15.07 3.73 3.73 Total: -1.00 -33.16 247.35 -7.90 -41.05 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.80 Total: 1.47 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 0.65 Total: -21.83 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.38 Total: -44.03 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -1.90 Total: -58.44 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 65.77 SS G_CDS: -2.93 Total: 62.85 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.16 -7.90 -41.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509597.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.807 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds