Wall clock time and date at job start Sun Mar 29 2020 22:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86804 * 119.99922 * 2 1 4 4 H 1.48499 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47069 * 300.00527 * 3 2 1 6 6 H 1.48504 * 109.46828 * 60.00412 * 3 2 1 7 7 C 1.37879 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00160 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99741 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40432 * 66.46193 * 9 7 2 11 11 O 1.42098 * 106.40518 * 293.54308 * 9 7 2 12 12 N 1.65610 * 107.21758 * 180.02562 * 9 7 2 13 13 C 1.46386 * 119.52032 * 269.93500 * 12 9 7 14 14 C 1.53240 * 109.48233 * 244.93054 * 13 12 9 15 15 S 1.81738 * 108.90963 * 302.56268 * 14 13 12 16 16 C 1.81742 * 102.30929 * 54.47109 * 15 14 13 17 17 C 1.46372 * 119.64116 * 90.00157 * 12 9 7 18 18 H 0.96997 * 120.00571 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.34885 * 125.00152 * 13 12 9 20 20 H 1.09001 * 109.59156 * 5.00885 * 13 12 9 21 21 H 1.09002 * 109.58540 * 182.69742 * 14 13 12 22 22 H 1.09005 * 109.58026 * 62.42362 * 14 13 12 23 23 H 1.09001 * 109.58412 * 65.25244 * 16 15 14 24 24 H 1.08994 * 109.58072 * 185.52820 * 16 15 14 25 25 H 1.08995 * 109.47588 * 354.90709 * 17 12 9 26 26 H 1.08999 * 109.46598 * 234.91644 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2485 -3.9354 -0.0005 13 6 2.7373 -4.4657 -1.2744 14 6 2.3097 -5.9304 -1.4160 15 16 2.9531 -6.8713 -0.0005 16 6 2.3095 -5.9304 1.4149 17 6 2.7401 -4.4667 1.2716 18 1 -0.4851 0.8400 0.0004 19 1 3.8252 -4.4009 -1.2989 20 1 2.3201 -3.8843 -2.0966 21 1 2.7133 -6.3410 -2.3415 22 1 1.2216 -5.9933 -1.4323 23 1 1.2213 -5.9913 1.4298 24 1 2.7112 -6.3426 2.3406 25 1 2.3249 -3.8837 2.0937 26 1 3.8281 -4.4041 1.2952 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509597.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:39 Heat of formation + Delta-G solvation = -117.968818 kcal Electronic energy + Delta-G solvation = -13711.801212 eV Core-core repulsion = 11234.899370 eV Total energy + Delta-G solvation = -2476.901842 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.028 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.22971 -37.54456 -36.18129 -35.19012 -32.73335 -30.20168 -28.26000 -24.73762 -23.19246 -20.86774 -19.46728 -18.49671 -17.19158 -16.90803 -16.88971 -15.97610 -15.53067 -15.37947 -14.97507 -14.71525 -14.04394 -13.85682 -13.79274 -13.22768 -13.04661 -12.69826 -12.53896 -12.49312 -12.29406 -12.25048 -11.81409 -11.28528 -11.00641 -10.79830 -10.10491 -8.79519 -8.65379 -7.51448 0.22089 0.81941 1.32525 1.33918 1.50692 1.51605 2.18971 2.55486 2.70037 3.69807 3.75511 3.87098 4.07721 4.14846 4.18676 4.38489 4.56081 4.59274 4.70317 4.87810 4.90519 5.07651 5.27292 5.85976 5.88205 6.76086 8.18261 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.049122 B = 0.008524 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.868811 B = 3283.907575 C = 3298.064420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.992 3.008 4 H -0.247 1.247 5 H -0.260 1.260 6 H -0.260 1.260 7 C -1.039 5.039 8 H 0.120 0.880 9 S 2.714 3.286 10 O -1.037 7.037 11 O -1.038 7.038 12 N -1.010 6.010 13 C 0.115 3.885 14 C -0.096 4.096 15 S -0.262 6.262 16 C -0.096 4.096 17 C 0.116 3.884 18 H 0.299 0.701 19 H 0.104 0.896 20 H 0.090 0.910 21 H 0.142 0.858 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.142 0.858 25 H 0.090 0.910 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 -7.517 -0.003 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.810 3.190 4 H -0.169 1.169 5 H -0.184 1.184 6 H -0.184 1.184 7 C -1.172 5.172 8 H 0.138 0.862 9 S 2.817 3.183 10 O -1.028 7.028 11 O -1.028 7.028 12 N -0.848 5.848 13 C -0.012 4.012 14 C -0.246 4.246 15 S -0.036 6.036 16 C -0.246 4.246 17 C -0.011 4.011 18 H 0.109 0.891 19 H 0.122 0.878 20 H 0.108 0.892 21 H 0.160 0.840 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.160 0.840 25 H 0.108 0.892 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.150 -8.560 -0.003 11.819 hybrid contribution -0.457 2.119 -0.001 2.167 sum 7.692 -6.441 -0.004 10.033 Atomic orbital electron populations 1.69985 1.08803 1.32337 1.41493 1.26036 0.95369 1.05445 0.87508 0.85079 0.79535 0.75048 0.79370 1.16945 1.18399 1.18388 1.30974 1.07166 1.12471 1.66597 0.86199 1.00206 0.72765 0.73807 0.71565 1.93296 1.74330 1.88277 1.46848 1.93295 1.74379 1.88272 1.46822 1.57534 1.62178 1.53543 1.11566 1.21550 1.01520 0.93215 0.84876 1.23876 1.03557 0.97392 0.99771 1.86410 1.72255 1.41990 1.02918 1.23880 1.03545 0.97399 0.99770 1.21539 1.01478 0.93202 0.84880 0.89087 0.87838 0.89158 0.83995 0.91032 0.91041 0.83982 0.89198 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.83 13.19 21.45 0.28 -52.54 15 2 C 0.07 3.79 5.46 84.66 0.46 4.25 15 3 Si 0.99 40.52 29.54 68.60 2.03 42.54 15 4 H -0.25 -9.35 7.11 99.48 0.71 -8.64 15 5 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 7 C -1.04 -55.96 9.75 67.73 0.66 -55.30 15 8 H 0.12 5.82 7.81 -2.91 -0.02 5.80 15 9 S 2.71 142.72 4.92 -56.49 -0.28 142.44 15 10 O -1.04 -60.34 16.60 -128.00 -2.12 -62.46 15 11 O -1.04 -60.36 16.60 -128.00 -2.13 -62.49 15 12 N -1.01 -39.02 3.10 -515.48 -1.60 -40.62 15 13 C 0.12 3.67 6.18 86.48 0.53 4.21 15 14 C -0.10 -2.65 6.66 72.06 0.48 -2.17 15 15 S -0.26 -6.98 22.30 -56.49 -1.26 -8.24 15 16 C -0.10 -2.65 6.67 72.06 0.48 -2.17 15 17 C 0.12 3.69 6.18 86.49 0.53 4.23 15 18 H 0.30 15.80 8.31 -92.71 -0.77 15.03 15 19 H 0.10 2.70 8.14 -2.38 -0.02 2.68 15 20 H 0.09 3.14 6.97 -2.39 -0.02 3.12 15 21 H 0.14 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.14 2.97 8.14 -2.39 -0.02 2.95 15 25 H 0.09 3.12 6.97 -2.39 -0.02 3.11 15 26 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 Total: -1.00 -72.21 247.35 -0.75 -72.95 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.18 Total: 15.37 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 3.15 Total: -46.95 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -1.31 Total: -93.16 kcal Atomic # 8 Polarization: -120.70 SS G_CDS: -4.25 Total: -124.95 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 135.74 SS G_CDS: -1.54 Total: 134.20 kcal Total: -72.21 -0.75 -72.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509597.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.014 kcal (2) G-P(sol) polarization free energy of solvation -72.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds