Wall clock time and date at job start Sun Mar 29 2020 22:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 119.99905 * 2 1 4 4 O 1.21606 * 119.99855 * 359.97438 * 3 2 1 5 5 C 1.47428 * 119.99850 * 179.97438 * 3 2 1 6 6 C 1.39678 * 120.21400 * 0.02562 * 5 3 2 7 7 C 1.37804 * 119.93306 * 179.97438 * 6 5 3 8 8 C 1.38656 * 120.38754 * 0.02562 * 7 6 5 9 9 C 1.37915 * 120.43686 * 359.97438 * 8 7 6 10 10 C 1.39113 * 120.04584 * 359.97438 * 9 8 7 11 11 S 1.76204 * 120.18761 * 179.97438 * 10 9 8 12 12 C 1.76204 * 99.99719 * 6.86464 * 11 10 9 13 13 H 1.07991 * 120.00493 * 5.66058 * 12 11 10 14 14 C 1.38807 * 119.99763 * 185.65520 * 12 11 10 15 15 N 1.31558 * 120.00052 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00142 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46984 * 89.99681 * 16 14 12 18 18 H 1.48498 * 109.46987 * 209.99549 * 16 14 12 19 19 H 1.48500 * 109.46878 * 329.99923 * 16 14 12 20 20 H 1.08996 * 109.47221 * 299.99718 * 1 2 3 21 21 H 1.08997 * 109.47177 * 60.00323 * 1 2 3 22 22 H 1.09001 * 109.46679 * 179.97438 * 1 2 3 23 23 H 0.96997 * 120.00061 * 179.97438 * 2 1 3 24 24 H 1.07997 * 120.03544 * 0.25294 * 6 5 3 25 25 H 1.08007 * 119.80795 * 179.97438 * 7 6 5 26 26 H 1.07996 * 119.78651 * 179.97438 * 8 7 6 27 27 H 1.07995 * 119.97769 * 179.97438 * 9 8 7 28 28 H 0.97000 * 119.99719 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5308 2.2204 -0.0005 5 6 3.6132 1.1672 0.0006 6 6 4.3161 -0.0398 0.0006 7 6 5.6941 -0.0331 0.0006 8 6 6.3896 1.1664 0.0011 9 6 5.7114 2.3673 0.0011 10 6 4.3204 2.3816 0.0000 11 16 3.4501 3.9137 0.0007 12 6 4.7972 5.0308 -0.2046 13 1 5.7927 4.6502 -0.3787 14 6 4.5788 6.4002 -0.1429 15 7 5.5847 7.2343 -0.2957 16 14 2.8569 7.0588 0.1587 17 1 2.6328 7.2080 1.6191 18 1 2.7097 8.3804 -0.5022 19 1 1.8596 6.1115 -0.4009 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.9500 -0.8400 0.0004 24 1 3.7802 -0.9774 -0.0040 25 1 6.2356 -0.9676 0.0010 26 1 7.4696 1.1604 0.0015 27 1 6.2606 3.2972 0.0019 28 1 5.4320 8.1912 -0.2521 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045163861.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:38 Heat of formation + Delta-G solvation = -31.280991 kcal Electronic energy + Delta-G solvation = -14111.578550 eV Core-core repulsion = 11638.824918 eV Total energy + Delta-G solvation = -2472.753632 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.97281 -39.00535 -35.63066 -34.82334 -32.27217 -31.85248 -28.01572 -27.75382 -24.35979 -23.43115 -21.64135 -20.16017 -18.86083 -17.53558 -17.12698 -16.94433 -16.17046 -16.02045 -15.47469 -15.25387 -14.93956 -14.22263 -14.15672 -13.67927 -13.42656 -13.11880 -13.06710 -13.02878 -12.48621 -12.26018 -11.55762 -11.42832 -11.33767 -10.58737 -10.17226 -10.06947 -9.80056 -8.68039 -8.60110 -6.31507 -0.03410 0.47015 1.00077 1.22747 1.40218 1.63011 1.97443 2.14999 2.32130 2.67619 2.77361 2.98044 3.90934 3.96916 4.23661 4.49461 4.59036 4.61504 4.67727 4.78793 4.99073 5.07327 5.35628 5.48999 5.50264 5.61396 5.66221 6.05250 6.15945 6.63282 6.83812 7.33735 8.51154 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.024777 B = 0.009698 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.798814 B = 2886.374820 C = 3992.823312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.717 5.717 3 C 0.543 3.457 4 O -0.559 6.559 5 C -0.176 4.176 6 C -0.053 4.053 7 C -0.148 4.148 8 C -0.072 4.072 9 C -0.171 4.171 10 C -0.057 4.057 11 S 0.019 5.981 12 C -0.585 4.585 13 H 0.080 0.920 14 C 0.054 3.946 15 N -0.907 5.907 16 Si 0.906 3.094 17 H -0.257 1.257 18 H -0.252 1.252 19 H -0.241 1.241 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.120 0.880 23 H 0.417 0.583 24 H 0.170 0.830 25 H 0.171 0.829 26 H 0.147 0.853 27 H 0.112 0.888 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 -19.370 1.031 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.371 5.371 3 C 0.331 3.669 4 O -0.440 6.440 5 C -0.189 4.189 6 C -0.073 4.073 7 C -0.170 4.170 8 C -0.093 4.093 9 C -0.196 4.196 10 C -0.174 4.174 11 S 0.275 5.725 12 C -0.732 4.732 13 H 0.097 0.903 14 C -0.152 4.152 15 N -0.544 5.544 16 Si 0.728 3.272 17 H -0.182 1.182 18 H -0.175 1.175 19 H -0.165 1.165 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.138 0.862 23 H 0.255 0.745 24 H 0.188 0.812 25 H 0.188 0.812 26 H 0.165 0.835 27 H 0.130 0.870 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.891 -17.899 1.120 19.212 hybrid contribution 1.378 0.660 -0.059 1.529 sum -5.513 -17.238 1.061 18.129 Atomic orbital electron populations 1.21670 0.78338 1.04411 1.01214 1.45495 1.08307 1.07730 1.75591 1.18491 0.87613 0.84349 0.76412 1.90742 1.69972 1.32430 1.50848 1.19591 0.92496 0.93338 1.13465 1.21522 0.95001 0.95810 0.94951 1.21409 0.93864 0.98598 1.03105 1.21554 1.01067 0.91544 0.95141 1.21465 0.92895 1.00105 1.05106 1.22548 0.97342 0.97592 0.99904 1.84044 1.10137 0.94919 1.83426 1.23640 0.97995 0.94981 1.56573 0.90273 1.25579 1.01020 0.96037 0.92614 1.69987 1.32966 1.03957 1.47440 0.86026 0.80460 0.80278 0.80467 1.18181 1.17539 1.16525 0.93522 0.93595 0.86190 0.74502 0.81243 0.81192 0.83531 0.87038 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.67 10.70 127.77 1.37 3.04 15 2 N -0.72 -16.56 5.66 -487.87 -2.76 -19.32 15 3 C 0.54 19.59 7.75 86.66 0.67 20.27 15 4 O -0.56 -25.80 13.77 -4.05 -0.06 -25.85 15 5 C -0.18 -6.41 5.89 -19.95 -0.12 -6.53 15 6 C -0.05 -1.30 9.53 22.52 0.21 -1.08 15 7 C -0.15 -3.42 10.02 22.27 0.22 -3.20 15 8 C -0.07 -2.21 10.03 22.29 0.22 -1.99 15 9 C -0.17 -7.33 9.22 22.40 0.21 -7.12 15 10 C -0.06 -2.61 6.14 23.04 0.14 -2.47 15 11 S 0.02 1.05 16.53 -56.49 -0.93 0.12 15 12 C -0.59 -35.63 9.54 67.96 0.65 -34.98 15 13 H 0.08 5.06 5.21 -2.91 -0.02 5.04 15 14 C 0.05 3.25 5.50 84.87 0.47 3.72 15 15 N -0.91 -56.13 13.96 21.65 0.30 -55.83 15 16 Si 0.91 45.84 27.74 68.60 1.90 47.74 15 17 H -0.26 -12.60 7.11 99.48 0.71 -11.89 15 18 H -0.25 -11.77 7.11 99.48 0.71 -11.06 15 19 H -0.24 -12.37 6.74 99.48 0.67 -11.70 15 20 H 0.05 1.02 8.14 -2.39 -0.02 1.00 15 21 H 0.05 1.02 8.14 -2.39 -0.02 1.00 15 22 H 0.12 1.12 8.14 -2.39 -0.02 1.10 15 23 H 0.42 5.95 6.86 -92.71 -0.64 5.31 15 24 H 0.17 2.26 6.40 -2.91 -0.02 2.25 15 25 H 0.17 2.30 8.06 -2.91 -0.02 2.28 15 26 H 0.15 3.57 8.06 -2.91 -0.02 3.55 15 27 H 0.11 5.53 5.03 -2.91 -0.01 5.52 15 28 H 0.28 15.88 8.31 -92.71 -0.77 15.11 15 Total: -1.00 -79.02 255.31 3.02 -76.00 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.52 Total: 7.50 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.05 Total: -30.36 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -2.46 Total: -75.15 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.06 Total: -25.85 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -0.93 Total: 0.12 kcal Total: -79.02 3.02 -76.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045163861.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.719 kcal (2) G-P(sol) polarization free energy of solvation -79.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds