Wall clock time and date at job start Sun Mar 29 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47344 * 240.00188 * 3 2 1 5 5 H 1.48508 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47214 * 119.99655 * 3 2 1 7 7 C 1.40052 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.46368 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27115 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 C 1.50698 * 109.47467 * 180.02562 * 12 11 9 14 14 C 1.38246 * 119.92443 * 269.72678 * 13 12 11 15 15 C 1.38247 * 120.14592 * 179.72690 * 14 13 12 16 16 C 1.38564 * 120.00051 * 0.54474 * 15 14 13 17 17 O 1.35992 * 120.07854 * 179.70681 * 16 15 14 18 18 C 1.39158 * 119.84724 * 359.72856 * 16 15 14 19 19 O 1.36000 * 120.06812 * 180.02562 * 18 16 15 20 20 C 1.38245 * 119.92614 * 89.99903 * 13 12 11 21 21 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 23 23 H 1.09009 * 109.47182 * 300.00268 * 12 11 9 24 24 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 25 25 H 1.08005 * 119.93167 * 359.97438 * 14 13 12 26 26 H 1.08003 * 120.00050 * 180.25047 * 15 14 13 27 27 H 0.96698 * 113.99853 * 270.02634 * 17 16 15 28 28 H 0.96701 * 113.99996 * 269.97499 * 19 18 16 29 29 H 1.07993 * 120.00338 * 359.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 6 2.1957 -6.0618 0.0194 14 6 2.6403 -6.5960 -1.1757 15 6 3.5429 -7.6431 -1.1750 16 6 3.9954 -8.1670 0.0254 17 8 4.8787 -9.2009 0.0280 18 6 3.5434 -7.6329 1.2283 19 8 3.9849 -8.1433 2.4090 20 6 2.6430 -6.5798 1.2205 21 1 -0.4850 0.8400 -0.0004 22 1 2.9189 -3.6477 0.0070 23 1 0.5894 -4.9697 0.9028 24 1 0.5900 -4.9786 -0.8771 25 1 2.2848 -6.1918 -2.1120 26 1 3.8919 -8.0559 -2.1100 27 1 4.4625 -10.0738 0.0310 28 1 3.4411 -8.8650 2.7535 29 1 2.2910 -6.1633 2.1527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045803094.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:34 Heat of formation + Delta-G solvation = -103.134217 kcal Electronic energy + Delta-G solvation = -15824.676117 eV Core-core repulsion = 12906.053824 eV Total energy + Delta-G solvation = -2918.622293 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.22854 -37.65335 -37.01123 -36.49584 -33.29372 -32.29105 -30.38515 -29.52203 -26.66653 -24.69472 -22.82401 -21.49596 -19.68831 -18.85271 -17.84955 -17.10835 -16.30105 -15.92611 -15.33416 -14.90266 -14.45056 -14.12503 -13.87227 -13.53371 -13.26004 -12.48019 -12.31928 -11.98253 -11.82579 -11.30760 -11.21311 -11.08941 -10.85653 -10.45958 -10.27623 -10.21123 -8.89235 -8.84713 -8.56708 -7.60850 -7.54121 -6.18840 -4.64536 1.07852 1.21095 3.16842 3.21388 3.23495 3.45537 4.00628 4.03465 4.12968 4.58041 4.85227 4.91776 5.14267 5.30466 5.39335 5.62838 5.73471 5.83687 6.13873 6.19889 6.25852 6.33906 6.66890 6.74285 7.27428 7.43501 7.69033 7.91231 8.05792 8.32156 9.02128 9.51196 10.58907 10.76971 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.043807 B = 0.004753 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.015135 B = 5890.170062 C = 5983.442543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.763 5.763 12 C 0.169 3.831 13 C -0.077 4.077 14 C -0.096 4.096 15 C -0.132 4.132 16 C 0.072 3.928 17 O -0.490 6.490 18 C 0.076 3.924 19 O -0.489 6.489 20 C -0.115 4.115 21 H 0.269 0.731 22 H 0.382 0.618 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.383 0.617 28 H 0.384 0.616 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 -15.947 0.041 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.419 5.419 12 C 0.045 3.955 13 C -0.078 4.078 14 C -0.115 4.115 15 C -0.151 4.151 16 C 0.027 3.973 17 O -0.299 6.299 18 C 0.031 3.969 19 O -0.298 6.298 20 C -0.134 4.134 21 H 0.080 0.920 22 H 0.213 0.787 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.151 0.849 26 H 0.150 0.850 27 H 0.238 0.762 28 H 0.239 0.761 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.632 -14.960 -0.015 15.985 hybrid contribution 0.309 -0.040 0.097 0.326 sum 5.941 -15.000 0.082 16.134 Atomic orbital electron populations 1.70006 1.07062 1.27406 1.35253 1.25708 0.94633 1.00296 0.92590 0.86419 0.79802 0.80947 0.79492 1.19266 1.20555 1.19255 1.20850 0.93610 0.89298 1.54404 0.91417 1.18241 0.87200 0.82313 0.76344 1.90601 1.14059 1.86705 1.55030 1.46216 1.08695 1.04131 1.82883 1.19816 0.91986 0.82003 1.01725 1.20170 0.98120 0.97146 0.92356 1.21095 0.96458 0.95490 0.98431 1.21321 0.97867 0.98565 0.97332 1.18782 0.94001 0.92632 0.91874 1.84923 1.32661 1.15867 1.96452 1.18767 0.96442 0.96803 0.84870 1.84934 1.54710 1.54778 1.35347 1.21362 0.96440 0.96437 0.99118 0.92027 0.78660 0.92321 0.92159 0.84935 0.85049 0.76237 0.76142 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.14 11.83 55.55 0.66 -22.48 15 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 15 3 Si 0.91 20.29 29.56 -169.99 -5.02 15.27 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 7 C -0.54 -15.52 9.54 -35.63 -0.34 -15.86 15 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 15 9 C 0.55 15.86 7.75 -12.99 -0.10 15.76 15 10 O -0.58 -18.81 15.02 5.20 0.08 -18.74 15 11 N -0.76 -17.21 5.54 -62.90 -0.35 -17.56 15 12 C 0.17 3.21 5.80 -5.19 -0.03 3.18 15 13 C -0.08 -1.16 5.25 -104.62 -0.55 -1.71 15 14 C -0.10 -1.28 9.69 -39.58 -0.38 -1.66 15 15 C -0.13 -1.58 9.98 -39.46 -0.39 -1.97 15 16 C 0.07 0.90 6.72 -39.12 -0.26 0.64 15 17 O -0.49 -5.37 13.29 -34.22 -0.45 -5.83 15 18 C 0.08 1.00 6.72 -39.12 -0.26 0.74 15 19 O -0.49 -5.81 13.29 -34.24 -0.46 -6.27 15 20 C -0.11 -1.62 9.63 -39.46 -0.38 -2.00 15 21 H 0.27 7.35 8.29 -40.82 -0.34 7.01 15 22 H 0.38 7.85 8.44 -40.82 -0.34 7.50 15 23 H 0.06 1.16 8.08 -51.92 -0.42 0.74 15 24 H 0.06 1.17 8.08 -51.93 -0.42 0.75 15 25 H 0.13 1.64 8.06 -52.48 -0.42 1.21 15 26 H 0.13 1.28 8.06 -52.48 -0.42 0.86 15 27 H 0.38 2.10 9.06 45.56 0.41 2.51 15 28 H 0.38 2.45 9.06 45.56 0.41 2.86 15 29 H 0.14 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 269.47 15.07 4.06 4.06 Total: -1.00 -36.89 269.47 -5.46 -42.35 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -1.17 Total: 9.73 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.80 Total: -0.54 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.31 Total: -40.04 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.83 Total: -30.83 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -36.89 -5.46 -42.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045803094.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.782 kcal (2) G-P(sol) polarization free energy of solvation -36.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds