Wall clock time and date at job start Sun Mar 29 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47344 * 240.00188 * 3 2 1 5 5 H 1.48508 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47214 * 119.99655 * 3 2 1 7 7 C 1.40052 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.46368 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27115 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 C 1.50698 * 109.47467 * 180.02562 * 12 11 9 14 14 C 1.38246 * 119.92443 * 269.72678 * 13 12 11 15 15 C 1.38247 * 120.14592 * 179.72690 * 14 13 12 16 16 C 1.38564 * 120.00051 * 0.54474 * 15 14 13 17 17 O 1.35992 * 120.07854 * 179.70681 * 16 15 14 18 18 C 1.39158 * 119.84724 * 359.72856 * 16 15 14 19 19 O 1.36000 * 120.06812 * 180.02562 * 18 16 15 20 20 C 1.38245 * 119.92614 * 89.99903 * 13 12 11 21 21 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 23 23 H 1.09009 * 109.47182 * 300.00268 * 12 11 9 24 24 H 1.08998 * 109.47207 * 59.99494 * 12 11 9 25 25 H 1.08005 * 119.93167 * 359.97438 * 14 13 12 26 26 H 1.08003 * 120.00050 * 180.25047 * 15 14 13 27 27 H 0.96698 * 113.99853 * 270.02634 * 17 16 15 28 28 H 0.96701 * 113.99996 * 269.97499 * 19 18 16 29 29 H 1.07993 * 120.00338 * 359.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 6 2.1957 -6.0618 0.0194 14 6 2.6403 -6.5960 -1.1757 15 6 3.5429 -7.6431 -1.1750 16 6 3.9954 -8.1670 0.0254 17 8 4.8787 -9.2009 0.0280 18 6 3.5434 -7.6329 1.2283 19 8 3.9849 -8.1433 2.4090 20 6 2.6430 -6.5798 1.2205 21 1 -0.4850 0.8400 -0.0004 22 1 2.9189 -3.6477 0.0070 23 1 0.5894 -4.9697 0.9028 24 1 0.5900 -4.9786 -0.8771 25 1 2.2848 -6.1918 -2.1120 26 1 3.8919 -8.0559 -2.1100 27 1 4.4625 -10.0738 0.0310 28 1 3.4411 -8.8650 2.7535 29 1 2.2910 -6.1633 2.1527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045803094.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:34 Heat of formation + Delta-G solvation = -134.476310 kcal Electronic energy + Delta-G solvation = -15826.035212 eV Core-core repulsion = 12906.053824 eV Total energy + Delta-G solvation = -2919.981388 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.23635 -39.45938 -37.91286 -37.83751 -35.10834 -34.38733 -31.61869 -30.74592 -28.58580 -26.26690 -23.83127 -22.69130 -21.70262 -19.82395 -19.37599 -18.50438 -17.46891 -17.35653 -16.99189 -16.12765 -15.97815 -15.74408 -15.26319 -14.82114 -14.63760 -14.27640 -13.56889 -13.44368 -13.15506 -12.86232 -12.81695 -12.64878 -12.58339 -12.23382 -12.04534 -11.18136 -10.92601 -10.05340 -9.84809 -9.52364 -9.47699 -8.29696 -6.87026 0.04818 0.20627 1.40433 1.43768 1.55561 2.24055 2.43693 2.45876 3.05237 3.21780 3.33926 3.59628 3.74049 3.87204 4.25827 4.31145 4.56604 4.70970 4.83004 4.93495 5.13705 5.25904 5.31074 5.55238 5.70230 5.85717 6.17235 6.24363 6.62645 6.85584 6.95254 7.50320 8.46444 8.65578 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.043807 B = 0.004753 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.015135 B = 5890.170062 C = 5983.442543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.538 3.462 10 O -0.631 6.631 11 N -0.751 5.751 12 C 0.174 3.826 13 C -0.090 4.090 14 C -0.096 4.096 15 C -0.125 4.125 16 C 0.082 3.918 17 O -0.498 6.498 18 C 0.075 3.925 19 O -0.500 6.500 20 C -0.122 4.122 21 H 0.275 0.725 22 H 0.393 0.607 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.139 0.861 26 H 0.159 0.841 27 H 0.409 0.591 28 H 0.408 0.592 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 -16.595 -0.297 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.611 4.611 8 H 0.104 0.896 9 C 0.343 3.657 10 O -0.518 6.518 11 N -0.405 5.405 12 C 0.050 3.950 13 C -0.091 4.091 14 C -0.115 4.115 15 C -0.143 4.143 16 C 0.037 3.963 17 O -0.311 6.311 18 C 0.030 3.970 19 O -0.312 6.312 20 C -0.141 4.141 21 H 0.085 0.915 22 H 0.226 0.774 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.157 0.843 26 H 0.176 0.824 27 H 0.268 0.732 28 H 0.266 0.734 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.925 -15.697 -0.344 17.587 hybrid contribution -0.352 -0.045 0.237 0.427 sum 7.572 -15.742 -0.108 17.469 Atomic orbital electron populations 1.70170 1.09494 1.29096 1.36278 1.26975 0.95556 1.04933 0.91164 0.85062 0.78206 0.74689 0.80275 1.17797 1.19751 1.17955 1.21404 0.94718 0.90113 1.54870 0.89597 1.18601 0.86835 0.84190 0.76084 1.90552 1.16074 1.87877 1.57333 1.45886 1.09191 1.04235 1.81226 1.19779 0.92685 0.81963 1.00542 1.19749 0.98787 0.96824 0.93750 1.21166 0.96651 0.95804 0.97854 1.21528 0.96856 0.97558 0.98387 1.18838 0.93077 0.92810 0.91600 1.84855 1.32827 1.17051 1.96323 1.18756 0.96013 0.96501 0.85727 1.84869 1.55461 1.55926 1.34984 1.21315 0.97155 0.97116 0.98508 0.91461 0.77370 0.93787 0.93079 0.84296 0.82358 0.73177 0.73371 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.67 11.83 21.84 0.26 -50.41 15 2 C 0.03 1.63 5.50 85.31 0.47 2.10 15 3 Si 1.00 41.34 29.56 68.60 2.03 43.37 15 4 H -0.25 -9.88 7.11 99.48 0.71 -9.18 15 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 15 7 C -0.57 -33.11 9.54 24.83 0.24 -32.87 15 8 H 0.09 4.46 7.85 -2.91 -0.02 4.44 15 9 C 0.54 31.76 7.75 86.36 0.67 32.43 15 10 O -0.63 -42.70 15.02 -4.33 -0.06 -42.76 15 11 N -0.75 -34.66 5.54 -471.14 -2.61 -37.28 15 12 C 0.17 6.84 5.80 85.63 0.50 7.34 15 13 C -0.09 -2.71 5.25 -19.86 -0.10 -2.81 15 14 C -0.10 -2.41 9.69 22.27 0.22 -2.20 15 15 C -0.13 -2.62 9.98 22.35 0.22 -2.40 15 16 C 0.08 1.81 6.72 22.57 0.15 1.96 15 17 O -0.50 -9.11 13.29 -79.59 -1.06 -10.17 15 18 C 0.08 1.84 6.72 22.57 0.15 1.99 15 19 O -0.50 -10.80 13.29 -79.68 -1.06 -11.86 15 20 C -0.12 -3.39 9.63 22.35 0.22 -3.17 15 21 H 0.28 15.37 8.29 -92.71 -0.77 14.61 15 22 H 0.39 16.24 8.44 -92.71 -0.78 15.46 15 23 H 0.04 1.83 8.08 -2.38 -0.02 1.81 15 24 H 0.05 2.08 8.08 -2.39 -0.02 2.06 15 25 H 0.14 3.26 8.06 -2.91 -0.02 3.24 15 26 H 0.16 2.46 8.06 -2.91 -0.02 2.44 15 27 H 0.41 2.88 9.06 -74.06 -0.67 2.21 15 28 H 0.41 4.23 9.06 -74.06 -0.67 3.56 15 29 H 0.13 3.64 8.06 -2.91 -0.02 3.62 15 Total: -1.00 -81.23 269.47 -0.69 -81.92 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.90 Total: 24.83 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 2.72 Total: 2.36 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -2.35 Total: -87.69 kcal Atomic # 8 Polarization: -62.61 SS G_CDS: -2.18 Total: -64.79 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -81.23 -0.69 -81.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045803094.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.556 kcal (2) G-P(sol) polarization free energy of solvation -81.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds