Wall clock time and date at job start Sun Mar 29 2020 22:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47252 * 239.99583 * 3 2 1 5 5 H 1.48496 * 109.47459 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47127 * 119.99752 * 3 2 1 7 7 C 1.37885 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46869 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47134 * 180.02562 * 10 9 7 12 12 C 1.34696 * 116.99856 * 180.02562 * 11 10 9 13 13 O 1.21450 * 120.00187 * 359.97438 * 12 11 10 14 14 C 1.47875 * 119.99581 * 180.02562 * 12 11 10 15 15 C 1.39967 * 120.91327 * 179.97438 * 14 12 11 16 16 C 1.38009 * 119.00077 * 180.02562 * 15 14 12 17 17 N 1.31987 * 120.89340 * 0.02634 * 16 15 14 18 18 O 1.41605 * 118.97844 * 179.97438 * 17 16 15 19 19 C 1.31989 * 122.04293 * 0.23233 * 17 16 15 20 20 C 1.38008 * 120.89320 * 359.48972 * 19 17 16 21 21 H 0.97004 * 119.99714 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47431 * 60.00631 * 9 7 2 23 23 H 1.09002 * 109.47547 * 299.99785 * 9 7 2 24 24 H 1.09003 * 109.47174 * 59.99831 * 10 9 7 25 25 H 1.09002 * 109.46693 * 300.00102 * 10 9 7 26 26 H 1.07999 * 120.49864 * 0.02562 * 15 14 12 27 27 H 1.07997 * 119.54868 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.55784 * 179.74158 * 19 17 16 29 29 H 1.07998 * 120.50296 * 180.25766 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 8 1.5190 -4.9196 0.0012 12 6 2.2526 -6.0493 0.0027 13 8 3.4655 -5.9858 0.0041 14 6 1.5812 -7.3668 0.0017 15 6 2.3246 -8.5527 0.0027 16 6 1.6572 -9.7607 0.0011 17 7 0.3381 -9.8062 -0.0019 18 8 -0.3048 -11.0679 -0.0040 19 6 -0.4003 -8.7122 -0.0080 20 6 0.1848 -7.4624 -0.0010 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8711 -3.6040 0.8923 25 1 2.8724 -3.6048 -0.8877 26 1 3.4042 -8.5229 0.0047 27 1 2.2221 -10.6812 0.0014 28 1 -1.4770 -8.7963 -0.0145 29 1 -0.4255 -6.5714 -0.0019 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058817526.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:12 Heat of formation + Delta-G solvation = -33.592635 kcal Electronic energy + Delta-G solvation = -15546.403946 eV Core-core repulsion = 12630.797202 eV Total energy + Delta-G solvation = -2915.606744 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.68125 -40.02901 -36.53513 -34.88891 -33.48272 -32.29651 -30.70518 -30.07589 -26.12388 -24.80342 -24.54867 -21.73011 -20.94704 -18.73704 -17.90611 -17.13518 -16.63239 -16.36504 -16.01845 -15.88282 -15.57105 -14.63869 -14.52621 -13.59454 -13.51845 -12.76206 -12.51277 -12.42090 -11.58925 -11.32667 -11.23463 -10.93125 -10.88581 -10.63406 -10.12095 -9.87808 -9.81316 -9.64486 -9.45542 -8.90784 -8.55072 -6.21317 -4.26536 -0.22806 0.23390 2.14593 2.21599 2.57493 3.00932 3.23008 3.27913 3.30289 3.97589 4.10555 4.17477 4.26082 4.40755 4.55234 5.06438 5.11646 5.15650 5.36004 5.43553 5.82031 5.87666 6.37614 6.42549 6.58291 6.72643 7.37174 7.45527 7.67055 7.82625 8.09579 8.78436 9.38678 10.89937 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.061344 B = 0.004084 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.334227 B = 6854.679866 C = 7290.565384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.347 6.347 12 C 0.502 3.498 13 O -0.497 6.497 14 C -0.076 4.076 15 C -0.063 4.063 16 C 0.064 3.936 17 N -0.105 5.105 18 O -0.540 6.540 19 C 0.065 3.935 20 C -0.064 4.064 21 H 0.265 0.735 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.177 0.823 27 H 0.190 0.810 28 H 0.191 0.809 29 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -12.720 -0.005 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.263 6.263 12 C 0.345 3.655 13 O -0.387 6.387 14 C -0.085 4.085 15 C -0.082 4.082 16 C -0.081 4.081 17 N 0.218 4.782 18 O -0.597 6.597 19 C -0.080 4.080 20 C -0.082 4.082 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.194 0.806 27 H 0.207 0.793 28 H 0.208 0.792 29 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.526 -12.879 -0.002 13.125 hybrid contribution 0.492 0.862 0.002 0.992 sum 3.018 -12.018 -0.001 12.391 Atomic orbital electron populations 1.69951 1.06105 1.27287 1.49334 1.24981 0.94946 0.99457 0.94692 0.86508 0.79486 0.82347 0.78829 1.20028 1.21064 1.20022 1.20904 0.93166 0.89976 1.52805 0.92228 1.19192 0.94155 0.88833 0.99033 1.23833 0.96584 0.77786 1.01449 1.86563 1.41976 1.15618 1.82130 1.20658 0.85627 0.85212 0.74047 1.90848 1.14645 1.88136 1.45029 1.19907 0.94014 0.92422 1.02191 1.21983 1.03031 0.88995 0.94189 1.22613 0.84077 1.00896 1.00528 1.43388 1.04975 1.10485 1.19357 1.97676 1.72702 1.00871 1.88456 1.22735 1.00913 0.84372 1.00003 1.22331 0.94389 0.98419 0.93102 0.92529 0.95204 0.95211 0.91783 0.91794 0.80568 0.79278 0.79177 0.79963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 13.29 55.43 0.74 -24.39 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 15 7 C -0.53 -14.03 9.11 -34.44 -0.31 -14.34 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.02 0.60 5.35 -27.88 -0.15 0.45 15 10 C 0.08 1.48 5.41 37.16 0.20 1.68 15 11 O -0.35 -5.76 9.57 -40.48 -0.39 -6.15 15 12 C 0.50 7.17 7.92 34.68 0.27 7.44 15 13 O -0.50 -8.19 16.23 -19.23 -0.31 -8.50 15 14 C -0.08 -0.79 5.91 -104.66 -0.62 -1.41 15 15 C -0.06 -0.52 9.68 -39.02 -0.38 -0.90 15 16 C 0.06 0.57 10.67 -17.57 -0.19 0.38 15 17 N -0.10 -1.28 3.58 -13.30 -0.05 -1.33 15 18 O -0.54 -9.93 20.04 -11.47 -0.23 -10.16 15 19 C 0.06 0.61 10.67 -17.57 -0.19 0.42 15 20 C -0.06 -0.55 9.70 -39.02 -0.38 -0.93 15 21 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 22 H 0.03 0.75 8.14 -51.93 -0.42 0.32 15 23 H 0.03 0.75 8.14 -51.93 -0.42 0.32 15 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.18 1.13 7.74 -52.49 -0.41 0.72 15 27 H 0.19 1.22 8.06 -52.49 -0.42 0.80 15 28 H 0.19 1.36 8.06 -52.48 -0.42 0.94 15 29 H 0.18 1.34 7.71 -52.49 -0.40 0.93 15 LS Contribution 273.63 15.07 4.12 4.12 Total: -1.00 -34.70 273.63 -5.86 -40.56 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -2.89 Total: -3.98 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.83 Total: -5.63 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.69 Total: -25.72 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.93 Total: -24.81 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -34.70 -5.86 -40.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817526.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.964 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds