Wall clock time and date at job start Sun Mar 29 2020 22:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47252 * 239.99583 * 3 2 1 5 5 H 1.48496 * 109.47459 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47127 * 119.99752 * 3 2 1 7 7 C 1.37885 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46869 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47134 * 180.02562 * 10 9 7 12 12 C 1.34696 * 116.99856 * 180.02562 * 11 10 9 13 13 O 1.21450 * 120.00187 * 359.97438 * 12 11 10 14 14 C 1.47875 * 119.99581 * 180.02562 * 12 11 10 15 15 C 1.39967 * 120.91327 * 179.97438 * 14 12 11 16 16 C 1.38009 * 119.00077 * 180.02562 * 15 14 12 17 17 N 1.31987 * 120.89340 * 0.02634 * 16 15 14 18 18 O 1.41605 * 118.97844 * 179.97438 * 17 16 15 19 19 C 1.31989 * 122.04293 * 0.23233 * 17 16 15 20 20 C 1.38008 * 120.89320 * 359.48972 * 19 17 16 21 21 H 0.97004 * 119.99714 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47431 * 60.00631 * 9 7 2 23 23 H 1.09002 * 109.47547 * 299.99785 * 9 7 2 24 24 H 1.09003 * 109.47174 * 59.99831 * 10 9 7 25 25 H 1.09002 * 109.46693 * 300.00102 * 10 9 7 26 26 H 1.07999 * 120.49864 * 0.02562 * 15 14 12 27 27 H 1.07997 * 119.54868 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.55784 * 179.74158 * 19 17 16 29 29 H 1.07998 * 120.50296 * 180.25766 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 8 1.5190 -4.9196 0.0012 12 6 2.2526 -6.0493 0.0027 13 8 3.4655 -5.9858 0.0041 14 6 1.5812 -7.3668 0.0017 15 6 2.3246 -8.5527 0.0027 16 6 1.6572 -9.7607 0.0011 17 7 0.3381 -9.8062 -0.0019 18 8 -0.3048 -11.0679 -0.0040 19 6 -0.4003 -8.7122 -0.0080 20 6 0.1848 -7.4624 -0.0010 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8711 -3.6040 0.8923 25 1 2.8724 -3.6048 -0.8877 26 1 3.4042 -8.5229 0.0047 27 1 2.2221 -10.6812 0.0014 28 1 -1.4770 -8.7963 -0.0145 29 1 -0.4255 -6.5714 -0.0019 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058817526.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:12 Heat of formation + Delta-G solvation = -55.830591 kcal Electronic energy + Delta-G solvation = -15547.368256 eV Core-core repulsion = 12630.797202 eV Total energy + Delta-G solvation = -2916.571054 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.56095 -41.25054 -37.87842 -35.83210 -35.41060 -33.07744 -32.37413 -31.33572 -27.55649 -26.15463 -25.42357 -23.20437 -22.36656 -19.77736 -18.92666 -18.40292 -17.96290 -17.66607 -17.41220 -16.72120 -16.49012 -16.47207 -15.20853 -15.12075 -14.81274 -14.36341 -13.71922 -13.28752 -13.20698 -13.01834 -12.61279 -12.60240 -12.32833 -12.04688 -11.59194 -11.50112 -11.42072 -10.82932 -10.82256 -10.58755 -10.09904 -8.25871 -6.38080 -1.11181 -0.47223 1.11235 1.34656 1.39247 1.45738 1.46041 1.54724 2.13394 2.40350 3.09499 3.10667 3.37149 3.39066 3.48637 3.76952 4.17145 4.25115 4.27927 4.42875 4.62491 4.67774 4.72797 5.17992 5.46162 5.50177 5.63323 5.72546 5.74296 6.07823 6.47451 6.75938 7.31743 8.85980 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.061344 B = 0.004084 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.334227 B = 6854.679866 C = 7290.565384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.029 3.971 10 C 0.091 3.909 11 O -0.351 6.351 12 C 0.507 3.493 13 O -0.517 6.517 14 C -0.079 4.079 15 C -0.043 4.043 16 C 0.078 3.922 17 N -0.126 5.126 18 O -0.606 6.606 19 C 0.075 3.925 20 C -0.050 4.050 21 H 0.267 0.733 22 H 0.010 0.990 23 H 0.010 0.990 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.201 0.799 27 H 0.214 0.786 28 H 0.209 0.791 29 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -12.544 -0.004 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.084 0.916 9 C -0.008 4.008 10 C 0.019 3.981 11 O -0.267 6.267 12 C 0.351 3.649 13 O -0.407 6.407 14 C -0.088 4.088 15 C -0.062 4.062 16 C -0.067 4.067 17 N 0.194 4.806 18 O -0.660 6.660 19 C -0.070 4.070 20 C -0.068 4.068 21 H 0.076 0.924 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.218 0.782 27 H 0.231 0.769 28 H 0.226 0.774 29 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.778 -12.749 -0.002 13.297 hybrid contribution 0.151 0.843 0.002 0.856 sum 3.929 -11.907 0.000 12.538 Atomic orbital electron populations 1.70069 1.07688 1.28258 1.50395 1.25901 0.95794 1.03240 0.94252 0.85443 0.78225 0.77806 0.79257 1.19147 1.20811 1.19139 1.21357 0.93781 0.91262 1.52376 0.91577 1.18993 0.94410 0.90323 0.97061 1.23298 0.95077 0.78066 1.01687 1.86526 1.41929 1.15508 1.82723 1.21115 0.85445 0.85443 0.72904 1.90846 1.15552 1.88338 1.45961 1.19793 0.94725 0.90912 1.03411 1.22169 1.03926 0.87589 0.92477 1.23056 0.83198 1.02126 0.98322 1.43504 1.06064 1.09673 1.21403 1.97652 1.73665 1.03339 1.91389 1.23059 1.01960 0.83677 0.98295 1.22420 0.93823 0.98557 0.92036 0.92416 0.97144 0.97155 0.91514 0.91524 0.78202 0.76939 0.77421 0.78482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.70 13.29 21.45 0.28 -52.41 15 2 C 0.01 0.40 5.46 84.66 0.46 0.86 15 3 Si 0.97 41.49 29.54 68.60 2.03 43.52 15 4 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 15 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.55 -29.00 9.11 25.60 0.23 -28.77 15 8 H 0.07 3.31 7.74 -2.91 -0.02 3.29 15 9 C 0.03 1.42 5.35 29.85 0.16 1.58 15 10 C 0.09 3.52 5.41 71.98 0.39 3.90 15 11 O -0.35 -11.19 9.57 -56.06 -0.54 -11.73 15 12 C 0.51 13.44 7.92 70.37 0.56 13.99 15 13 O -0.52 -15.94 16.23 20.00 0.32 -15.61 15 14 C -0.08 -1.44 5.91 -19.89 -0.12 -1.56 15 15 C -0.04 -0.58 9.68 22.63 0.22 -0.36 15 16 C 0.08 1.21 10.67 84.61 0.90 2.11 15 17 N -0.13 -2.94 3.58 -195.99 -0.70 -3.64 15 18 O -0.61 -22.47 20.04 -38.80 -0.78 -23.24 15 19 C 0.08 1.27 10.67 84.61 0.90 2.17 15 20 C -0.05 -0.75 9.70 22.63 0.22 -0.53 15 21 H 0.27 14.32 8.31 -92.71 -0.77 13.55 15 22 H 0.01 0.52 8.14 -2.39 -0.02 0.50 15 23 H 0.01 0.52 8.14 -2.39 -0.02 0.50 15 24 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 26 H 0.20 1.80 7.74 -2.91 -0.02 1.78 15 27 H 0.21 2.19 8.06 -2.91 -0.02 2.17 15 28 H 0.21 2.65 8.06 -2.91 -0.02 2.63 15 29 H 0.20 2.43 7.71 -2.91 -0.02 2.41 15 Total: -1.00 -75.36 273.63 5.71 -69.65 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: 1.16 Total: 0.06 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 3.93 Total: -6.60 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.42 Total: -56.05 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.99 Total: -50.59 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -75.36 5.71 -69.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817526.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.822 kcal (2) G-P(sol) polarization free energy of solvation -75.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds