Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99733 * 2 1 4 4 H 1.48500 * 109.46890 * 269.99413 * 3 2 1 5 5 H 1.48498 * 109.47050 * 29.99576 * 3 2 1 6 6 H 1.48500 * 109.46882 * 149.99574 * 3 2 1 7 7 C 1.38948 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00097 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00031 * 179.97438 * 10 9 7 13 13 S 1.81394 * 109.47167 * 179.97438 * 12 10 9 14 14 C 1.76199 * 103.00056 * 180.02562 * 13 12 10 15 15 C 1.38975 * 120.07816 * 180.02562 * 14 13 12 16 16 C 1.38086 * 119.91892 * 179.97438 * 15 14 13 17 17 C 1.38310 * 120.07752 * 359.97438 * 16 15 14 18 18 C 1.38301 * 120.16067 * 0.02562 * 17 16 15 19 19 C 1.38081 * 120.08205 * 359.97438 * 18 17 16 20 20 H 0.96995 * 120.00705 * 0.02562 * 1 2 3 21 21 H 0.96998 * 120.00086 * 359.97438 * 9 7 2 22 22 H 1.09000 * 109.46878 * 59.99790 * 12 10 9 23 23 H 1.09004 * 109.47053 * 299.99736 * 12 10 9 24 24 H 1.07995 * 120.04427 * 359.69664 * 15 14 13 25 25 H 1.08000 * 119.96089 * 179.97438 * 16 15 14 26 26 H 1.07995 * 119.91521 * 179.97438 * 17 16 15 27 27 H 1.07996 * 119.95950 * 179.97438 * 18 17 16 28 28 H 1.07997 * 120.04201 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8630 0.0011 13 16 2.4227 -6.2417 0.0002 14 6 1.3754 -7.6586 0.0003 15 6 1.9285 -8.9336 0.0002 16 6 1.1047 -10.0417 0.0007 17 6 -0.2694 -9.8840 0.0019 18 6 -0.8233 -8.6167 0.0020 19 6 -0.0057 -7.5040 0.0014 20 1 -0.4851 0.8399 -0.0004 21 1 0.3535 -2.3907 0.0005 22 1 0.6169 -4.9209 -0.8886 23 1 0.6176 -4.9205 0.8914 24 1 3.0013 -9.0575 -0.0049 25 1 1.5338 -11.0328 0.0003 26 1 -0.9113 -10.7525 0.0020 27 1 -1.8967 -8.4973 0.0025 28 1 -0.4389 -6.5147 0.0011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059014403.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = -15.946051 kcal Electronic energy + Delta-G solvation = -13448.944622 eV Core-core repulsion = 10976.855963 eV Total energy + Delta-G solvation = -2472.088659 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85394 -38.21863 -34.09413 -31.57587 -31.12530 -30.90610 -29.18138 -24.75416 -22.72546 -22.51188 -19.64415 -18.16516 -17.59906 -16.20539 -15.90259 -15.03529 -14.67794 -14.62020 -14.50775 -13.90958 -13.43348 -13.14521 -13.02717 -12.48003 -12.08549 -11.66809 -11.37675 -11.12544 -11.09992 -10.45472 -10.30724 -9.84531 -9.67241 -9.63344 -8.99768 -8.64765 -8.10903 -7.12682 -6.52531 -3.94182 1.24194 1.36100 1.69822 2.73367 3.11656 3.22063 3.28163 3.70651 3.71883 4.09601 4.77078 4.84694 4.91702 5.07105 5.10295 5.36789 5.50380 5.53114 5.58031 5.74149 5.96977 6.09446 6.30996 6.36321 6.47439 6.90163 7.45762 7.90605 8.44169 9.04138 9.37060 9.86429 10.64682 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.062969 B = 0.004668 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.558645 B = 5996.563871 C = 6425.978192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.452 3.548 11 O -0.578 6.578 12 C -0.133 4.133 13 S -0.033 6.033 14 C -0.096 4.096 15 C -0.106 4.106 16 C -0.103 4.103 17 C -0.137 4.137 18 C -0.100 4.100 19 C -0.140 4.140 20 H 0.274 0.726 21 H 0.394 0.606 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -14.956 0.008 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.186 5.186 10 C 0.236 3.764 11 O -0.463 6.463 12 C -0.285 4.285 13 S 0.213 5.787 14 C -0.209 4.209 15 C -0.130 4.130 16 C -0.123 4.123 17 C -0.159 4.159 18 C -0.120 4.120 19 C -0.164 4.164 20 H 0.084 0.916 21 H 0.228 0.772 22 H 0.119 0.881 23 H 0.119 0.881 24 H 0.144 0.856 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.461 -14.536 0.013 14.609 hybrid contribution -1.850 0.764 -0.012 2.001 sum -3.310 -13.772 0.002 14.165 Atomic orbital electron populations 1.69607 1.06019 1.28497 1.49696 1.25315 0.95684 0.99910 0.96839 0.85801 0.79264 0.80403 0.78527 1.20235 1.20793 1.19253 1.19754 0.93509 0.81875 1.48069 0.87610 1.41754 1.09304 1.04232 1.63300 1.18888 0.87935 0.83721 0.85843 1.90569 1.13238 1.86435 1.56062 1.23767 1.01830 0.96798 1.06126 1.86169 1.09118 0.92704 1.90701 1.22386 0.97144 0.98828 1.02551 1.20735 0.99947 0.90502 1.01811 1.21053 0.93630 0.98172 0.99414 1.21100 0.95130 0.97133 1.02502 1.21054 0.99545 0.92420 0.98957 1.21276 0.92277 0.99558 1.03306 0.91633 0.77215 0.88060 0.88053 0.85591 0.85870 0.86212 0.85994 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 13.05 55.50 0.72 -23.23 15 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 15 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 15 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 15 8 H 0.11 3.05 7.16 -52.48 -0.38 2.68 15 9 N -0.55 -13.80 5.29 -10.96 -0.06 -13.86 15 10 C 0.45 10.72 7.80 -10.98 -0.09 10.63 15 11 O -0.58 -15.80 15.44 5.55 0.09 -15.72 15 12 C -0.13 -2.40 4.82 36.01 0.17 -2.23 15 13 S -0.03 -0.57 21.06 -107.50 -2.26 -2.84 15 14 C -0.10 -1.41 6.11 -39.04 -0.24 -1.65 15 15 C -0.11 -1.36 9.79 -39.36 -0.39 -1.75 15 16 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 15 17 C -0.14 -1.44 10.04 -39.53 -0.40 -1.83 15 18 C -0.10 -1.14 10.04 -39.62 -0.40 -1.53 15 19 C -0.14 -1.87 9.36 -39.37 -0.37 -2.24 15 20 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 21 H 0.39 9.34 7.90 -40.82 -0.32 9.02 15 22 H 0.10 1.61 7.75 -51.92 -0.40 1.21 15 23 H 0.10 1.61 7.75 -51.92 -0.40 1.21 15 24 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 25 H 0.12 1.00 8.06 -52.49 -0.42 0.57 15 26 H 0.12 0.94 8.06 -52.49 -0.42 0.51 15 27 H 0.12 1.10 8.06 -52.49 -0.42 0.68 15 28 H 0.12 1.57 5.88 -52.49 -0.31 1.26 15 LS Contribution 265.88 15.07 4.01 4.01 Total: -1.00 -30.65 265.88 -7.50 -38.16 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -2.64 Total: 7.82 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.34 Total: -10.03 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.67 Total: -37.09 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.72 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -2.26 Total: -2.84 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.65 -7.50 -38.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059014403.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.210 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds