Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99733 * 2 1 4 4 H 1.48500 * 109.46890 * 269.99413 * 3 2 1 5 5 H 1.48498 * 109.47050 * 29.99576 * 3 2 1 6 6 H 1.48500 * 109.46882 * 149.99574 * 3 2 1 7 7 C 1.38948 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00097 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00031 * 179.97438 * 10 9 7 13 13 S 1.81394 * 109.47167 * 179.97438 * 12 10 9 14 14 C 1.76199 * 103.00056 * 180.02562 * 13 12 10 15 15 C 1.38975 * 120.07816 * 180.02562 * 14 13 12 16 16 C 1.38086 * 119.91892 * 179.97438 * 15 14 13 17 17 C 1.38310 * 120.07752 * 359.97438 * 16 15 14 18 18 C 1.38301 * 120.16067 * 0.02562 * 17 16 15 19 19 C 1.38081 * 120.08205 * 359.97438 * 18 17 16 20 20 H 0.96995 * 120.00705 * 0.02562 * 1 2 3 21 21 H 0.96998 * 120.00086 * 359.97438 * 9 7 2 22 22 H 1.09000 * 109.46878 * 59.99790 * 12 10 9 23 23 H 1.09004 * 109.47053 * 299.99736 * 12 10 9 24 24 H 1.07995 * 120.04427 * 359.69664 * 15 14 13 25 25 H 1.08000 * 119.96089 * 179.97438 * 16 15 14 26 26 H 1.07995 * 119.91521 * 179.97438 * 17 16 15 27 27 H 1.07996 * 119.95950 * 179.97438 * 18 17 16 28 28 H 1.07997 * 120.04201 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8630 0.0011 13 16 2.4227 -6.2417 0.0002 14 6 1.3754 -7.6586 0.0003 15 6 1.9285 -8.9336 0.0002 16 6 1.1047 -10.0417 0.0007 17 6 -0.2694 -9.8840 0.0019 18 6 -0.8233 -8.6167 0.0020 19 6 -0.0057 -7.5040 0.0014 20 1 -0.4851 0.8399 -0.0004 21 1 0.3535 -2.3907 0.0005 22 1 0.6169 -4.9209 -0.8886 23 1 0.6176 -4.9205 0.8914 24 1 3.0013 -9.0575 -0.0049 25 1 1.5338 -11.0328 0.0003 26 1 -0.9113 -10.7525 0.0020 27 1 -1.8967 -8.4973 0.0025 28 1 -0.4389 -6.5147 0.0011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059014403.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = -34.938714 kcal Electronic energy + Delta-G solvation = -13449.768206 eV Core-core repulsion = 10976.855963 eV Total energy + Delta-G solvation = -2472.912243 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.16603 -39.77014 -36.11439 -33.48340 -32.25975 -31.82423 -30.70899 -26.73239 -23.69188 -23.45931 -21.46469 -20.10166 -18.82714 -17.80898 -17.11436 -16.59610 -16.34126 -16.11371 -15.76494 -15.34330 -14.68841 -14.29083 -14.20161 -14.06175 -13.59808 -13.51054 -12.93054 -12.50947 -12.39176 -12.13768 -11.99885 -11.60150 -11.09597 -10.68833 -10.61426 -10.12679 -9.90725 -8.54268 -8.40347 -6.04297 0.29793 0.37849 0.45105 1.34258 1.41080 1.46769 1.53966 1.86816 2.26269 2.80970 3.01413 3.11472 3.95446 4.04669 4.04729 4.10547 4.25900 4.32776 4.55190 4.61676 4.82877 5.10677 5.35163 5.37313 5.48923 5.59280 5.87346 6.03674 6.45246 7.00945 7.38863 7.92838 8.62768 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.062969 B = 0.004668 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.558645 B = 5996.563871 C = 6425.978192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.557 5.557 10 C 0.449 3.551 11 O -0.619 6.619 12 C -0.115 4.115 13 S -0.088 6.088 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.101 4.101 17 C -0.129 4.129 18 C -0.104 4.104 19 C -0.153 4.153 20 H 0.281 0.719 21 H 0.400 0.600 22 H 0.123 0.877 23 H 0.123 0.877 24 H 0.129 0.871 25 H 0.154 0.846 26 H 0.154 0.846 27 H 0.148 0.852 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 -16.348 -0.007 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.468 4.468 8 H 0.100 0.900 9 N -0.193 5.193 10 C 0.235 3.765 11 O -0.506 6.506 12 C -0.266 4.266 13 S 0.156 5.844 14 C -0.224 4.224 15 C -0.142 4.142 16 C -0.121 4.121 17 C -0.149 4.149 18 C -0.123 4.123 19 C -0.177 4.177 20 H 0.090 0.910 21 H 0.234 0.766 22 H 0.141 0.859 23 H 0.142 0.858 24 H 0.146 0.854 25 H 0.172 0.828 26 H 0.172 0.828 27 H 0.166 0.834 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.060 -15.954 -0.004 16.245 hybrid contribution -1.426 1.014 -0.007 1.749 sum -4.486 -14.940 -0.011 15.599 Atomic orbital electron populations 1.69659 1.06873 1.29694 1.49268 1.26100 0.96595 1.02528 0.95695 0.84882 0.77894 0.76502 0.78800 1.19454 1.19284 1.19719 1.19717 0.92876 0.83606 1.50585 0.90003 1.41787 1.09483 1.04275 1.63804 1.19746 0.87780 0.85143 0.83795 1.90538 1.15359 1.87450 1.57266 1.23517 1.01244 0.93587 1.08214 1.86254 1.11300 0.94769 1.92073 1.22247 0.97169 0.97543 1.05412 1.20963 1.00689 0.90551 1.01975 1.21437 0.93843 0.98748 0.98039 1.21578 0.95404 0.97953 0.99987 1.21413 1.00746 0.92127 0.98062 1.21450 0.91908 1.00662 1.03708 0.90970 0.76579 0.85852 0.85848 0.85355 0.82787 0.82809 0.83432 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.50 13.05 21.66 0.28 -48.22 15 2 C -0.01 -0.44 5.50 84.93 0.47 0.02 15 3 Si 1.00 42.34 29.55 68.60 2.03 44.37 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 7 C -0.34 -19.13 9.68 84.04 0.81 -18.32 15 8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 15 9 N -0.56 -28.59 5.29 -306.98 -1.62 -30.21 15 10 C 0.45 21.86 7.80 87.66 0.68 22.55 15 11 O -0.62 -35.18 15.44 -3.06 -0.05 -35.22 15 12 C -0.11 -4.13 4.82 71.24 0.34 -3.78 15 13 S -0.09 -3.16 21.06 -56.49 -1.19 -4.35 15 14 C -0.11 -3.19 6.11 22.62 0.14 -3.05 15 15 C -0.12 -2.88 9.79 22.41 0.22 -2.66 15 16 C -0.10 -1.85 10.04 22.25 0.22 -1.63 15 17 C -0.13 -2.16 10.04 22.30 0.22 -1.93 15 18 C -0.10 -2.02 10.04 22.25 0.22 -1.80 15 19 C -0.15 -3.85 9.36 22.41 0.21 -3.64 15 20 H 0.28 13.86 8.31 -92.71 -0.77 13.09 15 21 H 0.40 19.19 7.90 -92.71 -0.73 18.46 15 22 H 0.12 3.86 7.75 -2.39 -0.02 3.84 15 23 H 0.12 3.86 7.75 -2.39 -0.02 3.84 15 24 H 0.13 2.96 8.06 -2.91 -0.02 2.93 15 25 H 0.15 1.84 8.06 -2.91 -0.02 1.82 15 26 H 0.15 1.56 8.06 -2.91 -0.02 1.54 15 27 H 0.15 2.07 8.06 -2.91 -0.02 2.05 15 28 H 0.13 3.00 5.88 -2.91 -0.02 2.98 15 Total: -1.00 -67.26 265.88 3.45 -63.82 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.45 Total: 24.07 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 3.55 Total: -14.25 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.34 Total: -78.43 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.05 Total: -35.22 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -1.19 Total: -4.35 kcal Total: -67.26 3.45 -63.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059014403.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.878 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds