Wall clock time and date at job start Sun Mar 29 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47369 * 18.24094 * 3 2 1 5 5 C 1.36957 * 119.99665 * 89.86709 * 4 3 2 6 6 H 1.07998 * 119.99562 * 223.33823 * 5 4 3 7 7 C 1.38978 * 120.00450 * 43.34229 * 5 4 3 8 8 N 1.31408 * 119.99549 * 16.62355 * 7 5 4 9 9 Si 1.86794 * 120.00094 * 196.62142 * 7 5 4 10 10 H 1.48498 * 109.47462 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47120 * 120.00062 * 9 7 5 12 12 H 1.48500 * 109.47345 * 239.99550 * 9 7 5 13 13 C 1.34770 * 120.00484 * 269.87056 * 4 3 2 14 14 O 1.21665 * 119.99543 * 5.00908 * 13 4 3 15 15 C 1.47173 * 120.00624 * 185.01560 * 13 4 3 16 16 C 1.35300 * 123.15419 * 185.73254 * 15 13 4 17 17 S 1.70944 * 108.81711 * 179.90375 * 16 15 13 18 18 C 1.70761 * 91.13963 * 0.30364 * 17 16 15 19 19 N 1.28659 * 110.57870 * 359.82269 * 18 17 16 20 20 H 1.08998 * 109.47380 * 258.23616 * 3 2 1 21 21 H 1.09004 * 109.47198 * 138.24360 * 3 2 1 22 22 H 0.97003 * 119.99926 * 180.02562 * 8 7 5 23 23 H 1.07995 * 125.58991 * 359.97438 * 16 15 13 24 24 H 1.08000 * 124.71196 * 179.82149 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0969 -1.3109 -0.4323 5 6 3.3227 -1.5535 -1.7612 6 1 3.0040 -2.4868 -2.2014 7 6 3.9619 -0.5988 -2.5432 8 7 4.6342 0.3752 -1.9720 9 14 3.8655 -0.7003 -4.4058 10 1 3.0541 -1.8812 -4.7960 11 1 3.2307 0.5329 -4.9365 12 1 5.2344 -0.8326 -4.9660 13 6 3.3245 -2.2787 0.4775 14 8 3.0383 -2.0949 1.6456 15 6 3.9194 -3.5579 0.0582 16 6 4.0718 -4.6119 0.8927 17 16 4.7935 -5.8988 0.0294 18 6 4.8585 -4.9542 -1.3916 19 7 4.3646 -3.7851 -1.1805 20 1 2.9712 0.2103 1.0060 21 1 2.9710 0.7675 -0.6844 22 1 5.0800 1.0418 -2.5178 23 1 3.7835 -4.6366 1.9332 24 1 5.2587 -5.2913 -2.3364 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062658382.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:21 Heat of formation + Delta-G solvation = 57.127244 kcal Electronic energy + Delta-G solvation = -14256.607532 eV Core-core repulsion = 11684.147225 eV Total energy + Delta-G solvation = -2572.460307 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.74135 -37.87409 -35.79683 -34.71292 -31.66718 -30.04891 -28.04067 -25.27405 -24.45223 -21.56762 -19.06991 -18.40598 -17.76642 -16.21167 -15.44373 -15.16091 -14.78762 -14.29697 -14.21151 -13.30204 -13.01650 -12.86325 -12.80664 -12.03030 -11.89658 -11.58135 -11.35103 -11.19074 -10.87292 -10.53948 -10.33351 -9.44655 -9.19797 -9.11613 -8.73740 -8.47308 -7.73854 -6.48715 -4.16334 1.06480 1.77062 2.09970 2.77558 3.13309 3.21638 3.25765 3.38775 3.61376 4.09566 4.23311 4.58834 4.74426 4.98441 5.26846 5.65496 5.73150 5.97719 6.24287 6.57730 6.71016 7.48401 7.60408 8.11630 8.32888 8.36745 8.97007 9.18144 9.62314 10.57092 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.011532 C = 0.008135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.710829 B = 2427.431394 C = 3441.146401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.219 3.781 3 C 0.199 3.801 4 N -0.415 5.415 5 C -0.305 4.305 6 H 0.107 0.893 7 C 0.046 3.954 8 N -0.867 5.867 9 Si 0.920 3.080 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.540 3.460 14 O -0.592 6.592 15 C 0.051 3.949 16 C -0.240 4.240 17 S 0.132 5.868 18 C -0.012 4.012 19 N -0.383 5.383 20 H 0.106 0.894 21 H 0.144 0.856 22 H 0.272 0.728 23 H 0.180 0.820 24 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -8.104 -0.393 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.099 4.099 3 C 0.073 3.927 4 N -0.133 5.133 5 C -0.434 4.434 6 H 0.124 0.876 7 C -0.160 4.160 8 N -0.504 5.504 9 Si 0.747 3.253 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.327 3.673 14 O -0.478 6.478 15 C -0.084 4.084 16 C -0.382 4.382 17 S 0.385 5.615 18 C -0.313 4.313 19 N -0.095 5.095 20 H 0.124 0.876 21 H 0.162 0.838 22 H 0.082 0.918 23 H 0.198 0.802 24 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.544 -8.399 -0.117 8.777 hybrid contribution 0.249 0.826 -0.828 1.196 sum 2.793 -7.573 -0.945 8.126 Atomic orbital electron populations 1.80973 1.13651 1.09273 1.11119 1.30413 0.96186 0.92136 0.91145 1.19081 0.78892 0.90840 1.03898 1.43166 1.53819 1.09136 1.07130 1.19748 1.36695 1.04844 0.82105 0.87575 1.25440 0.93596 0.96314 1.00611 1.69843 1.29064 1.14901 1.36569 0.85959 0.78196 0.78502 0.82652 1.19078 1.20671 1.20575 1.17464 0.81320 0.83799 0.84695 1.90682 1.57646 1.81512 1.17919 1.20565 1.03147 0.96524 0.88120 1.26443 1.08294 0.97084 1.06384 1.82534 1.55334 1.18218 1.05378 1.28849 1.05676 0.93417 1.03328 1.67635 1.07950 1.15747 1.18206 0.87636 0.83850 0.91789 0.80239 0.78817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.97 18.54 42.15 0.78 -10.19 14 2 C 0.22 4.92 15.76 -20.76 -0.33 4.59 14 3 C 0.20 4.40 5.44 -6.83 -0.04 4.36 14 4 N -0.42 -10.07 2.43 -119.24 -0.29 -10.36 14 5 C -0.31 -7.49 7.37 -14.99 -0.11 -7.60 14 6 H 0.11 2.65 6.49 -52.49 -0.34 2.31 14 7 C 0.05 1.11 5.03 -17.46 -0.09 1.02 14 8 N -0.87 -21.29 11.59 55.50 0.64 -20.64 14 9 Si 0.92 19.18 29.58 -169.99 -5.03 14.15 14 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 14 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 14 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 14 13 C 0.54 13.06 7.59 -12.64 -0.10 12.96 14 14 O -0.59 -15.01 16.35 5.22 0.09 -14.93 14 15 C 0.05 1.09 6.50 -84.53 -0.55 0.54 14 16 C -0.24 -4.17 10.62 29.69 0.32 -3.85 14 17 S 0.13 1.73 22.96 -107.50 -2.47 -0.74 14 18 C -0.01 -0.19 12.17 51.43 0.63 0.44 14 19 N -0.38 -7.75 7.31 -12.37 -0.09 -7.84 14 20 H 0.11 2.20 7.49 -51.93 -0.39 1.81 14 21 H 0.14 3.19 5.78 -51.93 -0.30 2.89 14 22 H 0.27 6.31 8.31 -40.82 -0.34 5.97 14 23 H 0.18 2.92 8.04 -52.49 -0.42 2.50 14 24 H 0.20 2.21 8.06 -52.49 -0.42 1.79 14 LS Contribution 244.74 15.07 3.69 3.69 Total: -1.00 -29.20 244.74 -3.96 -33.15 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -1.01 Total: 1.26 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -0.27 Total: 12.45 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 1.04 Total: -49.03 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.09 Total: -14.93 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.47 Total: -0.74 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.20 -3.96 -33.15 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062658382.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.281 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds