Wall clock time and date at job start Sun Mar 29 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47369 * 18.24094 * 3 2 1 5 5 C 1.36957 * 119.99665 * 89.86709 * 4 3 2 6 6 H 1.07998 * 119.99562 * 223.33823 * 5 4 3 7 7 C 1.38978 * 120.00450 * 43.34229 * 5 4 3 8 8 N 1.31408 * 119.99549 * 16.62355 * 7 5 4 9 9 Si 1.86794 * 120.00094 * 196.62142 * 7 5 4 10 10 H 1.48498 * 109.47462 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47120 * 120.00062 * 9 7 5 12 12 H 1.48500 * 109.47345 * 239.99550 * 9 7 5 13 13 C 1.34770 * 120.00484 * 269.87056 * 4 3 2 14 14 O 1.21665 * 119.99543 * 5.00908 * 13 4 3 15 15 C 1.47173 * 120.00624 * 185.01560 * 13 4 3 16 16 C 1.35300 * 123.15419 * 185.73254 * 15 13 4 17 17 S 1.70944 * 108.81711 * 179.90375 * 16 15 13 18 18 C 1.70761 * 91.13963 * 0.30364 * 17 16 15 19 19 N 1.28659 * 110.57870 * 359.82269 * 18 17 16 20 20 H 1.08998 * 109.47380 * 258.23616 * 3 2 1 21 21 H 1.09004 * 109.47198 * 138.24360 * 3 2 1 22 22 H 0.97003 * 119.99926 * 180.02562 * 8 7 5 23 23 H 1.07995 * 125.58991 * 359.97438 * 16 15 13 24 24 H 1.08000 * 124.71196 * 179.82149 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0969 -1.3109 -0.4323 5 6 3.3227 -1.5535 -1.7612 6 1 3.0040 -2.4868 -2.2014 7 6 3.9619 -0.5988 -2.5432 8 7 4.6342 0.3752 -1.9720 9 14 3.8655 -0.7003 -4.4058 10 1 3.0541 -1.8812 -4.7960 11 1 3.2307 0.5329 -4.9365 12 1 5.2344 -0.8326 -4.9660 13 6 3.3245 -2.2787 0.4775 14 8 3.0383 -2.0949 1.6456 15 6 3.9194 -3.5579 0.0582 16 6 4.0718 -4.6119 0.8927 17 16 4.7935 -5.8988 0.0294 18 6 4.8585 -4.9542 -1.3916 19 7 4.3646 -3.7851 -1.1805 20 1 2.9712 0.2103 1.0060 21 1 2.9710 0.7675 -0.6844 22 1 5.0800 1.0418 -2.5178 23 1 3.7835 -4.6366 1.9332 24 1 5.2587 -5.2913 -2.3364 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062658382.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:21 Heat of formation + Delta-G solvation = 38.370822 kcal Electronic energy + Delta-G solvation = -14257.420871 eV Core-core repulsion = 11684.147225 eV Total energy + Delta-G solvation = -2573.273646 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.29794 -39.47712 -37.63071 -36.54333 -33.49285 -31.45153 -29.75544 -26.96784 -25.94614 -23.11544 -20.73916 -19.88525 -19.39781 -17.87231 -17.06241 -16.90696 -16.34597 -15.88999 -15.80573 -14.98698 -14.66376 -14.55349 -14.10786 -13.83317 -13.69493 -13.18187 -13.00123 -12.79485 -12.55455 -12.29964 -11.99234 -11.20102 -10.78703 -10.47375 -10.24471 -9.75390 -9.51697 -8.28792 -6.01598 -0.24830 0.58419 0.84881 1.26396 1.47146 1.53708 1.59852 1.66273 1.78663 2.38922 2.56443 2.95620 3.00750 3.45280 3.63842 4.26005 4.39462 4.49979 4.65706 4.92906 5.13734 5.65423 5.81542 6.47030 6.53582 6.83470 7.16648 7.39068 7.81538 8.78141 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.011532 C = 0.008135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.710829 B = 2427.431394 C = 3441.146401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.230 3.770 3 C 0.204 3.796 4 N -0.428 5.428 5 C -0.312 4.312 6 H 0.100 0.900 7 C 0.014 3.986 8 N -0.892 5.892 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.527 3.473 14 O -0.618 6.618 15 C 0.007 3.993 16 C -0.252 4.252 17 S 0.262 5.738 18 C -0.022 4.022 19 N -0.432 5.432 20 H 0.113 0.887 21 H 0.143 0.857 22 H 0.275 0.725 23 H 0.184 0.816 24 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -10.137 -1.184 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.088 4.088 3 C 0.077 3.923 4 N -0.146 5.146 5 C -0.440 4.440 6 H 0.117 0.883 7 C -0.190 4.190 8 N -0.530 5.530 9 Si 0.802 3.198 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.202 1.202 13 C 0.316 3.684 14 O -0.506 6.506 15 C -0.128 4.128 16 C -0.395 4.395 17 S 0.516 5.484 18 C -0.321 4.321 19 N -0.146 5.146 20 H 0.131 0.869 21 H 0.160 0.840 22 H 0.085 0.915 23 H 0.202 0.798 24 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.432 -10.458 -0.916 11.045 hybrid contribution 0.044 1.255 -0.491 1.349 sum 3.475 -9.203 -1.407 9.937 Atomic orbital electron populations 1.80963 1.14009 1.09873 1.11751 1.30472 0.96157 0.91570 0.90588 1.19083 0.78529 0.90473 1.04191 1.43360 1.54190 1.09651 1.07355 1.19766 1.37103 1.04910 0.82261 0.88289 1.26048 0.93146 0.95953 1.03803 1.69901 1.29794 1.15508 1.37765 0.85107 0.78076 0.78241 0.78414 1.19004 1.20645 1.20218 1.18068 0.80775 0.85071 0.84448 1.90629 1.58743 1.82412 1.18772 1.20304 1.06223 0.96421 0.89849 1.26797 1.07477 0.98343 1.06879 1.82064 1.51353 1.13548 1.01394 1.29405 1.04089 0.92736 1.05901 1.67543 1.10129 1.18575 1.18318 0.86904 0.83973 0.91523 0.79844 0.75320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.79 18.54 20.01 0.37 -22.42 14 2 C 0.23 10.45 15.76 89.44 1.41 11.86 14 3 C 0.20 9.18 5.44 84.57 0.46 9.64 14 4 N -0.43 -21.19 2.43 -649.41 -1.58 -22.77 14 5 C -0.31 -15.47 7.37 84.07 0.62 -14.85 14 6 H 0.10 4.99 6.49 -2.91 -0.02 4.97 14 7 C 0.01 0.65 5.03 84.93 0.43 1.08 14 8 N -0.89 -44.04 11.59 21.67 0.25 -43.79 14 9 Si 0.98 38.99 29.58 68.60 2.03 41.02 14 10 H -0.27 -10.47 7.11 99.48 0.71 -9.76 14 11 H -0.28 -11.10 7.11 99.48 0.71 -10.39 14 12 H -0.28 -10.81 7.11 99.48 0.71 -10.10 14 13 C 0.53 26.05 7.59 86.59 0.66 26.71 14 14 O -0.62 -32.08 16.35 -4.24 -0.07 -32.15 14 15 C 0.01 0.30 6.50 40.55 0.26 0.57 14 16 C -0.25 -8.35 10.62 67.14 0.71 -7.64 14 17 S 0.26 5.79 22.96 -56.49 -1.30 4.49 14 18 C -0.02 -0.61 12.17 130.71 1.59 0.98 14 19 N -0.43 -17.09 7.31 -193.04 -1.41 -18.50 14 20 H 0.11 4.85 7.49 -2.39 -0.02 4.83 14 21 H 0.14 6.47 5.78 -2.39 -0.01 6.45 14 22 H 0.27 12.76 8.31 -92.71 -0.77 11.99 14 23 H 0.18 5.75 8.04 -2.91 -0.02 5.73 14 24 H 0.23 4.30 8.06 -2.91 -0.02 4.27 14 Total: -1.00 -63.46 244.74 5.69 -57.78 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.25 Total: 8.00 kcal Atomic # 6 Polarization: 22.21 SS G_CDS: 6.14 Total: 28.35 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -2.37 Total: -107.49 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.07 Total: -32.15 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.30 Total: 4.49 kcal Total: -63.46 5.69 -57.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062658382.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.146 kcal (2) G-P(sol) polarization free energy of solvation -63.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds