Wall clock time and date at job start Sun Mar 29 2020 22:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86794 * 119.99710 * 2 1 4 4 H 1.48504 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47618 * 300.00033 * 3 2 1 6 6 H 1.48502 * 109.47545 * 60.00508 * 3 2 1 7 7 C 1.38968 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99513 * 168.41611 * 7 2 1 9 9 N 1.36972 * 120.00139 * 348.69486 * 7 2 1 10 10 C 1.34770 * 120.00312 * 149.49715 * 9 7 2 11 11 O 1.21669 * 119.99871 * 356.41475 * 10 9 7 12 12 C 1.47106 * 120.00497 * 176.42210 * 10 9 7 13 13 C 1.44444 * 123.46842 * 27.46797 * 12 10 9 14 14 C 1.32767 * 113.08748 * 179.97438 * 13 12 10 15 15 S 1.75504 * 110.59267 * 359.97438 * 14 13 12 16 16 C 1.36093 * 123.47552 * 207.17244 * 12 10 9 17 17 C 1.46506 * 119.99783 * 329.48674 * 9 7 2 18 18 C 1.52993 * 117.49930 * 314.27299 * 17 9 7 19 19 C 1.53000 * 117.49935 * 245.64695 * 17 9 7 20 20 H 0.96996 * 119.99882 * 5.01363 * 1 2 3 21 21 H 1.07994 * 123.45825 * 359.93736 * 13 12 10 22 22 H 1.08000 * 124.70167 * 179.97438 * 14 13 12 23 23 H 1.08000 * 124.59305 * 0.02562 * 16 12 10 24 24 H 1.09005 * 115.54524 * 99.98095 * 17 9 7 25 25 H 1.09004 * 117.50221 * 359.97438 * 18 17 9 26 26 H 1.09005 * 117.49750 * 145.02207 * 18 17 9 27 27 H 1.09004 * 117.49657 * 214.98223 * 19 17 9 28 28 H 1.08997 * 117.49852 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0091 -1.2035 -0.0005 8 1 3.0726 -1.2129 -0.1884 9 7 1.3442 -2.3783 0.2315 10 6 1.7789 -3.5218 -0.3341 11 8 2.7221 -3.5002 -1.1023 12 6 1.1129 -4.7960 -0.0228 13 6 -0.2740 -4.8951 0.3686 14 6 -0.6616 -6.1436 0.6002 15 16 0.6682 -7.2602 0.3452 16 6 1.7383 -6.0034 -0.0796 17 6 0.1605 -2.3919 1.0947 18 6 0.2442 -1.6327 2.4203 19 6 0.2563 -3.1627 2.4129 20 1 -0.4850 0.8368 -0.0734 21 1 -0.9283 -4.0412 0.4638 22 1 -1.6572 -6.4321 0.9033 23 1 2.7729 -6.1457 -0.3549 24 1 -0.7987 -2.3973 0.5770 25 1 1.1800 -1.1234 2.6505 26 1 -0.6602 -1.1383 2.7751 27 1 -0.6401 -3.6748 2.7627 28 1 1.1998 -3.6600 2.6377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686675.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:48 Heat of formation + Delta-G solvation = 42.238379 kcal Electronic energy + Delta-G solvation = -14859.450545 eV Core-core repulsion = 12389.884952 eV Total energy + Delta-G solvation = -2469.565593 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20495 -36.30271 -35.94036 -32.99355 -31.10206 -29.17318 -25.98164 -23.42559 -21.97970 -21.46360 -20.04239 -18.34922 -17.49175 -16.84041 -15.32366 -15.11452 -14.84934 -14.03907 -13.52694 -13.34909 -13.03365 -12.43493 -12.24103 -11.86604 -11.73414 -11.21314 -11.11302 -10.74991 -10.58378 -10.56158 -10.32627 -9.84130 -9.37051 -8.87891 -8.52151 -8.43952 -7.86728 -7.64159 -6.35577 -3.92894 1.39851 2.03340 2.37386 2.74789 3.17023 3.24385 3.30645 4.10893 4.29359 4.69998 4.81763 5.12916 5.30180 5.60959 5.74720 5.78527 5.96946 6.01209 6.17590 6.29752 6.41406 6.64006 6.70805 6.82671 6.92447 7.09185 7.54824 8.15464 8.47845 9.15686 9.36546 9.97361 10.71359 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.042003 B = 0.008268 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.458747 B = 3385.719168 C = 3796.497732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.044 3.956 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.309 4.309 8 H 0.096 0.904 9 N -0.407 5.407 10 C 0.507 3.493 11 O -0.584 6.584 12 C -0.117 4.117 13 C -0.100 4.100 14 C -0.243 4.243 15 S 0.119 5.881 16 C -0.206 4.206 17 C 0.126 3.874 18 C -0.147 4.147 19 C -0.212 4.212 20 H 0.268 0.732 21 H 0.159 0.841 22 H 0.160 0.840 23 H 0.165 0.835 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 -8.288 4.877 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.748 3.252 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.437 4.437 8 H 0.114 0.886 9 N -0.124 5.124 10 C 0.295 3.705 11 O -0.469 6.469 12 C -0.134 4.134 13 C -0.129 4.129 14 C -0.378 4.378 15 S 0.382 5.618 16 C -0.344 4.344 17 C 0.021 3.979 18 C -0.184 4.184 19 C -0.251 4.251 20 H 0.078 0.922 21 H 0.176 0.824 22 H 0.178 0.822 23 H 0.182 0.818 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.383 -9.642 4.687 11.241 hybrid contribution 0.102 2.521 -0.123 2.526 sum -3.280 -7.121 4.564 9.072 Atomic orbital electron populations 1.69859 1.05957 1.27698 1.46880 1.25344 0.95430 0.99539 0.95881 0.85940 0.80017 0.81449 0.77825 1.19198 1.20636 1.20585 1.19564 0.93592 0.82193 1.48353 0.88613 1.42935 1.24320 1.06401 1.38771 1.17394 0.86550 0.82960 0.83600 1.90628 1.31295 1.86480 1.38494 1.20662 0.93847 0.94905 1.03949 1.21917 0.95075 0.97620 0.98299 1.25309 1.02800 0.96483 1.13177 1.82621 1.01438 1.10881 1.66826 1.25283 1.04781 0.96134 1.08197 1.21235 0.90425 1.01778 0.84497 1.22829 1.02448 0.92166 1.00978 1.23540 1.02132 0.95465 1.03935 0.92160 0.82390 0.82240 0.81782 0.87488 0.89100 0.89680 0.89406 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.49 11.12 55.50 0.62 -21.87 15 2 C 0.04 1.13 4.74 -17.45 -0.08 1.05 15 3 Si 0.92 20.48 29.57 -169.99 -5.03 15.46 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.31 -8.56 8.63 -14.98 -0.13 -8.69 15 8 H 0.10 2.79 7.59 -52.49 -0.40 2.39 15 9 N -0.41 -10.49 2.90 -109.04 -0.32 -10.80 15 10 C 0.51 13.08 7.46 -12.67 -0.09 12.99 15 11 O -0.58 -17.05 16.69 5.22 0.09 -16.96 15 12 C -0.12 -2.42 5.30 -104.63 -0.55 -2.98 15 13 C -0.10 -1.74 7.34 -39.01 -0.29 -2.03 15 14 C -0.24 -3.49 11.12 28.86 0.32 -3.17 15 15 S 0.12 1.66 23.02 -107.50 -2.47 -0.82 15 16 C -0.21 -3.73 10.62 29.96 0.32 -3.41 15 17 C 0.13 2.74 2.17 -67.93 -0.15 2.60 15 18 C -0.15 -2.96 8.78 -26.73 -0.23 -3.19 15 19 C -0.21 -3.86 7.65 -26.73 -0.20 -4.06 15 20 H 0.27 6.60 8.32 -40.82 -0.34 6.26 15 21 H 0.16 2.75 4.73 -52.49 -0.25 2.50 15 22 H 0.16 1.78 8.06 -52.49 -0.42 1.36 15 23 H 0.16 2.92 8.06 -52.49 -0.42 2.50 15 24 H 0.11 2.36 6.68 -51.93 -0.35 2.02 15 25 H 0.09 1.98 7.92 -51.93 -0.41 1.57 15 26 H 0.08 1.59 8.14 -51.93 -0.42 1.16 15 27 H 0.09 1.35 8.04 -51.93 -0.42 0.93 15 28 H 0.08 1.61 8.14 -51.93 -0.42 1.19 15 LS Contribution 254.12 15.07 3.83 3.83 Total: -1.00 -30.23 254.12 -7.03 -37.26 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -2.65 Total: 4.80 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -1.09 Total: -10.89 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.30 Total: -32.67 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.09 Total: -16.96 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.46 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.47 Total: -0.82 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.23 -7.03 -37.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686675.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.497 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds