Wall clock time and date at job start Sun Mar 29 2020 22:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86794 * 119.99710 * 2 1 4 4 H 1.48504 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47618 * 300.00033 * 3 2 1 6 6 H 1.48502 * 109.47545 * 60.00508 * 3 2 1 7 7 C 1.38968 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99513 * 168.41611 * 7 2 1 9 9 N 1.36972 * 120.00139 * 348.69486 * 7 2 1 10 10 C 1.34770 * 120.00312 * 149.49715 * 9 7 2 11 11 O 1.21669 * 119.99871 * 356.41475 * 10 9 7 12 12 C 1.47106 * 120.00497 * 176.42210 * 10 9 7 13 13 C 1.44444 * 123.46842 * 27.46797 * 12 10 9 14 14 C 1.32767 * 113.08748 * 179.97438 * 13 12 10 15 15 S 1.75504 * 110.59267 * 359.97438 * 14 13 12 16 16 C 1.36093 * 123.47552 * 207.17244 * 12 10 9 17 17 C 1.46506 * 119.99783 * 329.48674 * 9 7 2 18 18 C 1.52993 * 117.49930 * 314.27299 * 17 9 7 19 19 C 1.53000 * 117.49935 * 245.64695 * 17 9 7 20 20 H 0.96996 * 119.99882 * 5.01363 * 1 2 3 21 21 H 1.07994 * 123.45825 * 359.93736 * 13 12 10 22 22 H 1.08000 * 124.70167 * 179.97438 * 14 13 12 23 23 H 1.08000 * 124.59305 * 0.02562 * 16 12 10 24 24 H 1.09005 * 115.54524 * 99.98095 * 17 9 7 25 25 H 1.09004 * 117.50221 * 359.97438 * 18 17 9 26 26 H 1.09005 * 117.49750 * 145.02207 * 18 17 9 27 27 H 1.09004 * 117.49657 * 214.98223 * 19 17 9 28 28 H 1.08997 * 117.49852 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8895 2.3965 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0091 -1.2035 -0.0005 8 1 3.0726 -1.2129 -0.1884 9 7 1.3442 -2.3783 0.2315 10 6 1.7789 -3.5218 -0.3341 11 8 2.7221 -3.5002 -1.1023 12 6 1.1129 -4.7960 -0.0228 13 6 -0.2740 -4.8951 0.3686 14 6 -0.6616 -6.1436 0.6002 15 16 0.6682 -7.2602 0.3452 16 6 1.7383 -6.0034 -0.0796 17 6 0.1605 -2.3919 1.0947 18 6 0.2442 -1.6327 2.4203 19 6 0.2563 -3.1627 2.4129 20 1 -0.4850 0.8368 -0.0734 21 1 -0.9283 -4.0412 0.4638 22 1 -1.6572 -6.4321 0.9033 23 1 2.7729 -6.1457 -0.3549 24 1 -0.7987 -2.3973 0.5770 25 1 1.1800 -1.1234 2.6505 26 1 -0.6602 -1.1383 2.7751 27 1 -0.6401 -3.6748 2.7627 28 1 1.1998 -3.6600 2.6377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686675.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:48 Heat of formation + Delta-G solvation = 23.148285 kcal Electronic energy + Delta-G solvation = -14860.278353 eV Core-core repulsion = 12389.884952 eV Total energy + Delta-G solvation = -2470.393402 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.95505 -37.99778 -37.55722 -34.89017 -33.06352 -30.52771 -27.84586 -25.08134 -23.65714 -23.00465 -21.60341 -19.95579 -19.12129 -18.49800 -17.15332 -16.75498 -16.53041 -15.87120 -15.29884 -14.97415 -14.56278 -13.93321 -13.66736 -13.51710 -13.22002 -13.02540 -12.87062 -12.57490 -12.24659 -12.12352 -11.88772 -11.60873 -11.06343 -10.69966 -10.34939 -9.84101 -9.58604 -9.10824 -8.34691 -6.01445 0.02503 0.80894 1.09832 1.25140 1.39258 1.43986 1.52127 2.26403 2.46039 2.97000 3.09005 3.25400 4.01687 4.07622 4.18521 4.33243 4.43103 4.62647 4.70897 4.84916 5.02125 5.14742 5.30526 5.35944 5.41440 5.46207 5.50628 6.11967 6.52147 7.14695 7.41725 8.02090 8.70304 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.042003 B = 0.008268 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.458747 B = 3385.719168 C = 3796.497732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.018 3.982 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.350 4.350 8 H 0.062 0.938 9 N -0.417 5.417 10 C 0.489 3.511 11 O -0.641 6.641 12 C -0.151 4.151 13 C -0.122 4.122 14 C -0.223 4.223 15 S 0.222 5.778 16 C -0.226 4.226 17 C 0.105 3.895 18 C -0.151 4.151 19 C -0.169 4.169 20 H 0.275 0.725 21 H 0.155 0.845 22 H 0.204 0.796 23 H 0.155 0.845 24 H 0.103 0.897 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 -9.877 6.376 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.202 1.202 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.478 4.478 8 H 0.080 0.920 9 N -0.133 5.133 10 C 0.279 3.721 11 O -0.531 6.531 12 C -0.169 4.169 13 C -0.151 4.151 14 C -0.358 4.358 15 S 0.487 5.513 16 C -0.364 4.364 17 C 0.001 3.999 18 C -0.189 4.189 19 C -0.207 4.207 20 H 0.085 0.915 21 H 0.173 0.827 22 H 0.220 0.780 23 H 0.172 0.828 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.147 0.853 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.643 -11.240 6.219 14.031 hybrid contribution 0.776 2.855 -0.609 3.021 sum -4.867 -8.385 5.610 11.201 Atomic orbital electron populations 1.69914 1.06547 1.28752 1.45936 1.25963 0.96316 1.01662 0.94724 0.85086 0.78254 0.77745 0.78550 1.20206 1.19983 1.18652 1.19442 0.92784 0.84216 1.51317 0.91987 1.43134 1.25018 1.05900 1.39262 1.18313 0.86106 0.84926 0.82790 1.90550 1.33892 1.87734 1.40962 1.20411 0.95838 0.93017 1.07641 1.21694 0.93361 0.99130 1.00893 1.25833 1.04744 0.95327 1.09868 1.82297 0.98447 1.07133 1.63433 1.25536 1.05726 0.97639 1.07530 1.21267 0.88686 1.05061 0.84928 1.22832 1.02042 0.93907 1.00113 1.23506 1.03335 0.94023 0.99824 0.91509 0.82739 0.77950 0.82777 0.87924 0.91505 0.87904 0.85270 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.74 11.12 21.67 0.24 -45.50 15 2 C 0.02 0.96 4.74 84.93 0.40 1.37 15 3 Si 0.98 42.81 29.57 68.60 2.03 44.84 15 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 15 7 C -0.35 -20.49 8.63 84.07 0.73 -19.76 15 8 H 0.06 3.94 7.59 -2.91 -0.02 3.91 15 9 N -0.42 -22.54 2.90 -617.13 -1.79 -24.33 15 10 C 0.49 26.67 7.46 86.57 0.65 27.31 15 11 O -0.64 -40.36 16.69 -4.25 -0.07 -40.43 15 12 C -0.15 -6.34 5.30 -19.87 -0.11 -6.45 15 13 C -0.12 -4.02 7.34 22.68 0.17 -3.85 15 14 C -0.22 -5.35 11.12 66.64 0.74 -4.61 15 15 S 0.22 5.27 23.02 -56.49 -1.30 3.97 15 16 C -0.23 -8.04 10.62 67.32 0.72 -7.33 15 17 C 0.10 4.60 2.17 44.99 0.10 4.70 15 18 C -0.15 -6.03 8.78 30.59 0.27 -5.76 15 19 C -0.17 -5.85 7.65 30.60 0.23 -5.62 15 20 H 0.28 13.39 8.32 -92.71 -0.77 12.62 15 21 H 0.16 5.14 4.73 -2.91 -0.01 5.12 15 22 H 0.20 3.13 8.06 -2.91 -0.02 3.11 15 23 H 0.15 5.64 8.06 -2.91 -0.02 5.62 15 24 H 0.10 4.55 6.68 -2.38 -0.02 4.53 15 25 H 0.07 2.97 7.92 -2.38 -0.02 2.95 15 26 H 0.10 3.67 8.14 -2.38 -0.02 3.65 15 27 H 0.13 3.41 8.04 -2.38 -0.02 3.39 15 28 H 0.07 2.75 8.14 -2.39 -0.02 2.73 15 Total: -1.00 -70.63 254.12 4.18 -66.45 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 1.17 Total: 15.00 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 3.89 Total: -20.01 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -1.55 Total: -69.83 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.07 Total: -40.43 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.30 Total: 3.97 kcal Total: -70.63 4.18 -66.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686675.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.600 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds