Wall clock time and date at job start Sun Mar 29 2020 21:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37667 * 126.49561 * 2 1 4 4 C 1.34378 * 106.94238 * 179.97438 * 3 2 1 5 5 N 1.34390 * 108.32363 * 0.02562 * 4 3 2 6 6 C 1.31201 * 109.29972 * 359.75723 * 5 4 3 7 7 N 1.38500 * 125.78623 * 180.26563 * 6 5 4 8 8 C 1.46898 * 110.99885 * 62.75539 * 7 6 5 9 9 C 1.53237 * 109.34052 * 172.74280 * 8 7 6 10 10 N 1.47076 * 108.52386 * 53.82771 * 9 8 7 11 11 C 1.36937 * 120.88396 * 128.83647 * 10 9 8 12 12 H 1.08007 * 119.99844 * 207.24872 * 11 10 9 13 13 C 1.38806 * 120.00055 * 27.24887 * 11 10 9 14 14 N 1.31623 * 120.00033 * 16.08755 * 13 11 10 15 15 Si 1.86800 * 120.00401 * 196.08593 * 13 11 10 16 16 H 1.48503 * 109.46719 * 89.99721 * 15 13 11 17 17 H 1.48498 * 109.47403 * 210.00187 * 15 13 11 18 18 H 1.48505 * 109.46898 * 330.00492 * 15 13 11 19 19 C 1.47088 * 118.23478 * 308.81763 * 10 9 8 20 20 C 1.46891 * 111.00235 * 298.44739 * 7 6 5 21 21 H 1.08998 * 109.47105 * 88.44391 * 1 2 3 22 22 H 1.08998 * 109.46801 * 328.45018 * 1 2 3 23 23 H 1.08997 * 109.47411 * 208.44901 * 1 2 3 24 24 H 1.07994 * 126.53039 * 359.94254 * 3 2 1 25 25 H 1.08002 * 125.84022 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.49401 * 292.69952 * 8 7 6 27 27 H 1.09004 * 109.49740 * 52.77939 * 8 7 6 28 28 H 1.09000 * 109.62670 * 294.11624 * 9 8 7 29 29 H 1.08998 * 109.63064 * 173.53937 * 9 8 7 30 30 H 0.97001 * 120.00271 * 180.02562 * 14 13 11 31 31 H 1.08998 * 109.62424 * 291.47314 * 19 10 9 32 32 H 1.08997 * 109.62599 * 170.89372 * 19 10 9 33 33 H 1.09001 * 109.49716 * 307.21171 * 20 7 6 34 34 H 1.09004 * 109.49227 * 67.30097 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2838 1.1067 0.0000 4 6 3.5501 0.6570 0.0006 5 7 3.5212 -0.6866 0.0004 6 6 2.2739 -1.0936 0.0049 7 7 1.8525 -2.4129 0.0114 8 6 2.2932 -3.1003 1.2325 9 6 1.6583 -4.4939 1.2876 10 7 1.9652 -5.1971 0.0329 11 6 2.5039 -6.4560 0.0463 12 1 3.1166 -6.7900 -0.7781 13 6 2.2626 -7.3028 1.1194 14 7 1.2837 -7.0389 1.9588 15 14 3.3271 -8.8168 1.3723 16 1 4.4887 -8.4676 2.2291 17 1 2.5271 -9.8799 2.0319 18 1 3.8119 -9.3064 0.0567 19 6 1.6776 -4.5125 -1.2368 20 6 2.3118 -3.1182 -1.1925 21 1 -0.3633 0.0279 -1.0273 22 1 -0.3633 0.8758 0.5377 23 1 -0.3634 -0.9035 0.4895 24 1 1.9685 2.1396 -0.0009 25 1 4.4390 1.2704 0.0011 26 1 3.3790 -3.1954 1.2247 27 1 1.9843 -2.5251 2.1054 28 1 0.5782 -4.3999 1.4000 29 1 2.0697 -5.0507 2.1295 30 1 1.1153 -7.6305 2.7089 31 1 0.5994 -4.4204 -1.3670 32 1 2.1019 -5.0817 -2.0639 33 1 2.0164 -2.5560 -2.0784 34 1 3.3974 -3.2131 -1.1666 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070994955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:48 Heat of formation + Delta-G solvation = 107.621685 kcal Electronic energy + Delta-G solvation = -17088.958616 eV Core-core repulsion = 14445.319892 eV Total energy + Delta-G solvation = -2643.638724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.72256 -37.87268 -34.27431 -33.70749 -31.32234 -29.98938 -28.54922 -26.94090 -25.87626 -23.08509 -22.61270 -21.20336 -20.06667 -18.88778 -17.30326 -16.54465 -15.61756 -15.15403 -14.59270 -14.39012 -14.04212 -13.49726 -13.44588 -13.33914 -13.08228 -12.63104 -12.55685 -12.25888 -11.52432 -11.11501 -10.75379 -10.57227 -10.36034 -10.16706 -9.85418 -9.79573 -9.69249 -9.39209 -8.55934 -8.24898 -8.11422 -6.68412 -5.78129 -3.20271 2.16882 2.80801 3.30792 3.40388 3.47094 3.48159 4.28183 4.51337 4.87372 4.97309 5.23345 5.32075 5.38891 5.43946 5.55516 5.82188 5.85053 5.90602 6.12337 6.18967 6.33833 6.41374 6.48951 6.59917 6.79956 6.86902 7.06046 7.17136 7.52223 7.63652 7.80483 7.92371 8.33015 8.43384 9.20866 9.83481 10.41673 11.31115 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.048218 B = 0.006180 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.559882 B = 4529.774159 C = 4622.990408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.454 5.454 3 C -0.066 4.066 4 C -0.024 4.024 5 N -0.512 5.512 6 C 0.387 3.613 7 N -0.467 5.467 8 C 0.050 3.950 9 C 0.179 3.821 10 N -0.594 5.594 11 C -0.251 4.251 12 H 0.067 0.933 13 C 0.002 3.998 14 N -0.905 5.905 15 Si 0.904 3.096 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.150 3.850 20 C 0.059 3.941 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.172 0.828 25 H 0.165 0.835 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.094 0.906 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 14.450 -3.265 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.139 5.139 3 C -0.199 4.199 4 C -0.173 4.173 5 N -0.234 5.234 6 C 0.035 3.965 7 N -0.192 5.192 8 C -0.078 4.078 9 C 0.053 3.947 10 N -0.317 5.317 11 C -0.381 4.381 12 H 0.085 0.915 13 C -0.196 4.196 14 N -0.550 5.550 15 Si 0.734 3.266 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.204 1.204 19 C 0.023 3.977 20 C -0.070 4.070 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.189 0.811 25 H 0.182 0.818 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.693 13.794 -3.140 14.248 hybrid contribution 0.526 -0.004 0.225 0.572 sum -1.167 13.790 -2.915 14.143 Atomic orbital electron populations 1.21939 0.76612 1.04521 1.03204 1.45605 1.07539 1.06053 1.54699 1.22552 0.91258 0.91938 1.14158 1.22128 0.96251 0.91316 1.07649 1.70851 1.18973 1.11994 1.21578 1.21321 0.83783 0.88170 1.03182 1.58865 1.59013 0.95629 1.05705 1.22973 0.99261 0.97499 0.88115 1.20916 0.96820 0.86264 0.90689 1.44105 1.73360 1.14807 0.99477 1.19217 1.23268 0.89455 1.06112 0.91492 1.25039 0.97127 0.97740 0.99739 1.70011 1.28905 1.38947 1.17149 0.86257 0.79925 0.82396 0.77999 1.21419 1.21760 1.20416 1.21018 0.96869 0.89479 0.90349 1.22654 0.99021 0.96165 0.89117 0.90987 0.90434 0.88627 0.81078 0.81780 0.93745 0.92350 0.95476 0.88819 0.93591 0.95599 0.91996 0.92245 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 11.14 59.85 0.67 1.53 16 2 N -0.45 -6.61 3.20 -124.91 -0.40 -7.01 16 3 C -0.07 -0.85 11.60 -16.29 -0.19 -1.04 16 4 C -0.02 -0.36 11.84 -17.79 -0.21 -0.57 16 5 N -0.51 -9.64 11.22 -13.91 -0.16 -9.80 16 6 C 0.39 7.02 6.26 -319.60 -2.00 5.02 16 7 N -0.47 -9.03 4.53 -174.38 -0.79 -9.82 16 8 C 0.05 1.05 5.53 -3.70 -0.02 1.03 16 9 C 0.18 4.36 5.41 -3.61 -0.02 4.34 16 10 N -0.59 -15.16 3.04 -172.01 -0.52 -15.68 16 11 C -0.25 -6.94 9.63 -15.06 -0.15 -7.09 16 12 H 0.07 1.82 7.88 -52.48 -0.41 1.40 16 13 C 0.00 0.05 4.95 -17.43 -0.09 -0.03 16 14 N -0.91 -26.23 11.14 55.49 0.62 -25.61 16 15 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.15 3.21 6.69 -3.60 -0.02 3.19 16 20 C 0.06 1.15 5.52 -3.70 -0.02 1.13 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 24 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 25 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 2.52 6.14 -51.93 -0.32 2.20 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.27 7.95 -51.93 -0.41 0.86 16 33 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -31.87 282.12 -9.00 -40.87 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.92 Total: -1.52 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -2.05 Total: 7.52 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.25 Total: -67.91 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.87 -9.00 -40.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.491 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds