Wall clock time and date at job start Sun Mar 29 2020 21:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37667 * 126.49561 * 2 1 4 4 C 1.34378 * 106.94238 * 179.97438 * 3 2 1 5 5 N 1.34390 * 108.32363 * 0.02562 * 4 3 2 6 6 C 1.31201 * 109.29972 * 359.75723 * 5 4 3 7 7 N 1.38500 * 125.78623 * 180.26563 * 6 5 4 8 8 C 1.46898 * 110.99885 * 62.75539 * 7 6 5 9 9 C 1.53237 * 109.34052 * 172.74280 * 8 7 6 10 10 N 1.47076 * 108.52386 * 53.82771 * 9 8 7 11 11 C 1.36937 * 120.88396 * 128.83647 * 10 9 8 12 12 H 1.08007 * 119.99844 * 207.24872 * 11 10 9 13 13 C 1.38806 * 120.00055 * 27.24887 * 11 10 9 14 14 N 1.31623 * 120.00033 * 16.08755 * 13 11 10 15 15 Si 1.86800 * 120.00401 * 196.08593 * 13 11 10 16 16 H 1.48503 * 109.46719 * 89.99721 * 15 13 11 17 17 H 1.48498 * 109.47403 * 210.00187 * 15 13 11 18 18 H 1.48505 * 109.46898 * 330.00492 * 15 13 11 19 19 C 1.47088 * 118.23478 * 308.81763 * 10 9 8 20 20 C 1.46891 * 111.00235 * 298.44739 * 7 6 5 21 21 H 1.08998 * 109.47105 * 88.44391 * 1 2 3 22 22 H 1.08998 * 109.46801 * 328.45018 * 1 2 3 23 23 H 1.08997 * 109.47411 * 208.44901 * 1 2 3 24 24 H 1.07994 * 126.53039 * 359.94254 * 3 2 1 25 25 H 1.08002 * 125.84022 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.49401 * 292.69952 * 8 7 6 27 27 H 1.09004 * 109.49740 * 52.77939 * 8 7 6 28 28 H 1.09000 * 109.62670 * 294.11624 * 9 8 7 29 29 H 1.08998 * 109.63064 * 173.53937 * 9 8 7 30 30 H 0.97001 * 120.00271 * 180.02562 * 14 13 11 31 31 H 1.08998 * 109.62424 * 291.47314 * 19 10 9 32 32 H 1.08997 * 109.62599 * 170.89372 * 19 10 9 33 33 H 1.09001 * 109.49716 * 307.21171 * 20 7 6 34 34 H 1.09004 * 109.49227 * 67.30097 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2838 1.1067 0.0000 4 6 3.5501 0.6570 0.0006 5 7 3.5212 -0.6866 0.0004 6 6 2.2739 -1.0936 0.0049 7 7 1.8525 -2.4129 0.0114 8 6 2.2932 -3.1003 1.2325 9 6 1.6583 -4.4939 1.2876 10 7 1.9652 -5.1971 0.0329 11 6 2.5039 -6.4560 0.0463 12 1 3.1166 -6.7900 -0.7781 13 6 2.2626 -7.3028 1.1194 14 7 1.2837 -7.0389 1.9588 15 14 3.3271 -8.8168 1.3723 16 1 4.4887 -8.4676 2.2291 17 1 2.5271 -9.8799 2.0319 18 1 3.8119 -9.3064 0.0567 19 6 1.6776 -4.5125 -1.2368 20 6 2.3118 -3.1182 -1.1925 21 1 -0.3633 0.0279 -1.0273 22 1 -0.3633 0.8758 0.5377 23 1 -0.3634 -0.9035 0.4895 24 1 1.9685 2.1396 -0.0009 25 1 4.4390 1.2704 0.0011 26 1 3.3790 -3.1954 1.2247 27 1 1.9843 -2.5251 2.1054 28 1 0.5782 -4.3999 1.4000 29 1 2.0697 -5.0507 2.1295 30 1 1.1153 -7.6305 2.7089 31 1 0.5994 -4.4204 -1.3670 32 1 2.1019 -5.0817 -2.0639 33 1 2.0164 -2.5560 -2.0784 34 1 3.3974 -3.2131 -1.1666 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:48 Heat of formation + Delta-G solvation = 87.671842 kcal Electronic energy + Delta-G solvation = -17089.823706 eV Core-core repulsion = 14445.319892 eV Total energy + Delta-G solvation = -2644.503814 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.90107 -39.54288 -36.10836 -34.79164 -33.26597 -31.78620 -29.95258 -28.18045 -27.36658 -24.94500 -24.37698 -22.40006 -21.45288 -20.57380 -18.84192 -18.15576 -16.99937 -16.72190 -16.27571 -15.66068 -15.54393 -15.27795 -15.08555 -15.06601 -14.29742 -14.06342 -13.66278 -13.35639 -13.27068 -13.07043 -12.66272 -12.44199 -12.17096 -12.04598 -11.75733 -11.61818 -11.05180 -10.62175 -10.52559 -9.84410 -9.26860 -8.73585 -7.89415 -5.34756 1.02805 1.47572 1.49701 1.58069 1.68952 2.12084 2.50652 2.93312 3.27274 3.58960 3.89581 4.05312 4.16799 4.23084 4.41119 4.47304 4.49915 4.55190 4.56720 4.70514 4.77884 4.80690 4.88844 5.09620 5.19033 5.30755 5.57612 5.59301 5.63796 5.84751 5.99747 6.35438 6.60036 7.11113 7.14555 7.79646 8.34431 9.18334 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.048218 B = 0.006180 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.559882 B = 4529.774159 C = 4622.990408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.450 5.450 3 C -0.034 4.034 4 C -0.053 4.053 5 N -0.549 5.549 6 C 0.347 3.653 7 N -0.461 5.461 8 C 0.070 3.930 9 C 0.191 3.809 10 N -0.613 5.613 11 C -0.265 4.265 12 H 0.068 0.932 13 C -0.048 4.048 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.268 1.268 19 C 0.150 3.850 20 C 0.073 3.927 21 H 0.087 0.913 22 H 0.113 0.887 23 H 0.078 0.922 24 H 0.222 0.778 25 H 0.188 0.812 26 H 0.021 0.979 27 H 0.070 0.930 28 H 0.011 0.989 29 H 0.063 0.937 30 H 0.252 0.748 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 16.541 -3.984 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.134 5.134 3 C -0.168 4.168 4 C -0.201 4.201 5 N -0.272 5.272 6 C -0.005 4.005 7 N -0.185 5.185 8 C -0.059 4.059 9 C 0.065 3.935 10 N -0.337 5.337 11 C -0.395 4.395 12 H 0.086 0.914 13 C -0.243 4.243 14 N -0.581 5.581 15 Si 0.797 3.203 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.193 1.193 19 C 0.024 3.976 20 C -0.056 4.056 21 H 0.106 0.894 22 H 0.132 0.868 23 H 0.097 0.903 24 H 0.239 0.761 25 H 0.205 0.795 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.956 15.904 -3.887 16.489 hybrid contribution 0.582 -0.501 0.410 0.870 sum -1.374 15.404 -3.477 15.851 Atomic orbital electron populations 1.22204 0.74365 1.05457 1.04638 1.45832 1.08947 1.05423 1.53234 1.23345 0.90152 0.93255 1.10012 1.22660 0.98451 0.90129 1.08901 1.70721 1.19988 1.14522 1.22013 1.21055 0.84551 0.87957 1.06919 1.58701 1.58752 0.96643 1.04436 1.22559 0.97288 0.96062 0.89948 1.20616 0.95645 0.87629 0.89596 1.44360 1.73606 1.14724 1.01029 1.19530 1.23327 0.90378 1.06292 0.91407 1.25788 0.98268 1.00664 0.99602 1.70154 1.30323 1.40023 1.17558 0.85244 0.78038 0.78940 0.78087 1.21420 1.21838 1.19271 1.21124 0.97154 0.90441 0.88885 1.22435 0.97384 0.95325 0.90407 0.89435 0.86812 0.90294 0.76145 0.79498 0.96009 0.91189 0.97114 0.91896 0.93917 0.95344 0.91309 0.89838 0.95568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 11.14 127.77 1.42 2.78 16 2 N -0.45 -11.75 3.20 -549.11 -1.76 -13.51 16 3 C -0.03 -0.73 11.60 82.89 0.96 0.23 16 4 C -0.05 -1.44 11.84 83.42 0.99 -0.45 16 5 N -0.55 -20.18 11.22 -197.94 -2.22 -22.40 16 6 C 0.35 12.15 6.26 260.37 1.63 13.78 16 7 N -0.46 -17.73 4.53 -705.62 -3.20 -20.93 16 8 C 0.07 3.04 5.53 86.38 0.48 3.52 16 9 C 0.19 9.65 5.41 86.35 0.47 10.12 16 10 N -0.61 -32.02 3.04 -698.12 -2.12 -34.14 16 11 C -0.27 -14.93 9.63 84.03 0.81 -14.13 16 12 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 13 C -0.05 -2.70 4.95 84.86 0.42 -2.28 16 14 N -0.93 -55.55 11.14 21.65 0.24 -55.31 16 15 Si 0.97 45.47 29.58 68.60 2.03 47.50 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 C 0.15 6.46 6.69 86.35 0.58 7.03 16 20 C 0.07 2.84 5.52 86.39 0.48 3.32 16 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 24 H 0.22 2.37 8.06 -2.91 -0.02 2.34 16 25 H 0.19 3.91 8.06 -2.91 -0.02 3.89 16 26 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 2.81 8.09 -2.38 -0.02 2.79 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 3.54 6.14 -2.39 -0.01 3.53 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 2.82 7.95 -2.39 -0.02 2.80 16 33 H 0.08 2.82 8.09 -2.39 -0.02 2.80 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -70.44 282.12 2.28 -68.16 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.07 Total: 6.71 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 8.23 Total: 23.93 kcal Atomic # 7 Polarization: -137.24 SS G_CDS: -9.05 Total: -146.29 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.44 2.28 -68.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.829 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds