Wall clock time and date at job start Sun Mar 29 2020 21:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.50408 * 2 1 4 4 C 1.53118 * 109.53531 * 239.89687 * 2 1 3 5 5 C 1.53117 * 109.16350 * 182.38967 * 4 2 1 6 6 C 1.53044 * 109.27909 * 57.65145 * 5 4 2 7 7 N 1.46843 * 109.52241 * 300.82434 * 6 5 4 8 8 C 1.46905 * 111.00185 * 185.83939 * 7 6 5 9 9 C 1.52994 * 109.47387 * 169.63112 * 8 7 6 10 10 H 1.08994 * 109.47688 * 56.34159 * 9 8 7 11 11 C 1.47204 * 109.47128 * 296.34015 * 9 8 7 12 12 N 5.09419 * 131.27814 * 59.89707 * 2 1 3 13 13 C 1.52998 * 109.47050 * 176.34658 * 9 8 7 14 14 C 1.50705 * 109.47119 * 185.00012 * 13 9 8 15 15 H 1.08000 * 119.99991 * 359.97438 * 14 13 9 16 16 C 1.37871 * 119.99914 * 179.97438 * 14 13 9 17 17 N 1.31516 * 119.99879 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00223 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47237 * 89.99859 * 18 16 14 20 20 H 1.48496 * 109.47006 * 329.99800 * 18 16 14 21 21 H 1.48498 * 109.47059 * 209.99976 * 18 16 14 22 22 C 1.46851 * 111.19865 * 61.74056 * 7 6 5 23 23 H 1.09000 * 109.47013 * 299.92623 * 1 2 3 24 24 H 1.09000 * 109.46801 * 59.92571 * 1 2 3 25 25 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.52579 * 302.29106 * 4 2 1 27 27 H 1.08994 * 109.52562 * 62.48298 * 4 2 1 28 28 H 1.09000 * 109.50966 * 177.59505 * 5 4 2 29 29 H 1.09003 * 109.50259 * 297.67874 * 5 4 2 30 30 H 1.08999 * 109.46321 * 180.80873 * 6 5 4 31 31 H 1.09000 * 109.46012 * 60.83776 * 6 5 4 32 32 H 1.09004 * 109.46860 * 49.62379 * 8 7 6 33 33 H 1.09006 * 109.46741 * 289.63154 * 8 7 6 34 34 H 1.09000 * 109.47521 * 64.99272 * 13 9 8 35 35 H 1.09000 * 109.46863 * 304.99452 * 13 9 8 36 36 H 0.97006 * 120.00120 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46100 * 58.27723 * 22 7 6 38 38 H 1.09004 * 109.46149 * 178.23641 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7238 -1.2484 5 6 3.5720 -0.7712 -1.2099 6 6 4.0237 -1.4718 0.0736 7 7 3.5093 -0.7409 1.2387 8 6 4.0371 -1.3041 2.4886 9 6 3.6945 -0.3722 3.6526 10 1 2.6163 -0.2174 3.6890 11 6 4.3697 0.9217 3.4604 12 7 4.8907 1.9201 3.3120 13 6 4.1640 -1.0022 4.9655 14 6 3.7186 -0.1445 6.1218 15 1 3.1573 0.7598 5.9386 16 6 4.0278 -0.5142 7.4135 17 7 3.6396 0.2346 8.4226 18 14 4.9981 -2.0787 7.7305 19 1 6.4503 -1.7680 7.7360 20 1 4.7074 -3.0667 6.6608 21 1 4.6081 -2.6449 9.0467 22 6 2.0409 -0.7230 1.2483 23 1 -0.3633 0.5127 0.8906 24 1 -0.3633 0.5150 -0.8893 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6466 -1.7394 -1.2686 27 1 1.7166 -0.1874 -2.1397 28 1 3.9410 -1.3226 -2.0747 29 1 3.9681 0.2441 -1.2296 30 1 5.1128 -1.4944 0.1110 31 1 3.6387 -2.4914 0.0855 32 1 5.1195 -1.4072 2.4120 33 1 3.5904 -2.2830 2.6632 34 1 5.2515 -1.0754 4.9650 35 1 3.7329 -1.9984 5.0649 36 1 3.8568 -0.0257 9.3315 37 1 1.6653 -1.7462 1.2548 38 1 1.6899 -0.2018 2.1391 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072589961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:19 Heat of formation + Delta-G solvation = 3.509236 kcal Electronic energy + Delta-G solvation = -16862.941931 eV Core-core repulsion = 14318.328897 eV Total energy + Delta-G solvation = -2544.613035 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.33785 -36.58544 -34.43245 -33.33351 -32.22300 -31.15098 -27.40030 -26.68977 -24.58314 -22.24885 -21.58035 -21.28005 -19.67289 -16.87332 -16.73968 -15.86994 -14.96541 -14.58501 -14.55094 -14.16291 -14.08533 -13.40635 -13.07524 -12.78301 -12.58171 -12.46424 -12.29811 -11.98481 -11.89048 -11.48686 -11.35305 -11.24445 -11.05238 -10.79794 -10.66053 -10.42973 -10.41839 -10.10184 -9.94504 -9.69427 -9.30495 -8.60975 -8.19492 -6.09906 -4.10442 3.27272 3.34721 3.35126 3.72597 3.81492 3.96388 4.38802 4.68170 4.77856 4.82016 4.86169 5.06988 5.25062 5.31007 5.41111 5.46990 5.51302 5.54299 5.56297 5.71903 5.72776 5.76980 5.85093 5.92103 5.98507 6.08345 6.11042 6.18284 6.26009 6.35742 6.40721 6.95560 7.10613 7.17259 7.22423 7.64725 8.41751 8.58812 8.93850 9.49996 11.03232 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.005734 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.626032 B = 4882.055247 C = 4989.744396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.117 4.117 6 C 0.057 3.943 7 N -0.541 5.541 8 C 0.060 3.940 9 C 0.020 3.980 10 H 0.105 0.895 11 C 0.254 3.746 12 N -0.472 5.472 13 C -0.005 4.005 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.263 1.263 21 H -0.287 1.287 22 C 0.055 3.945 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.034 0.966 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 -7.028 -17.993 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.071 4.071 7 N -0.266 5.266 8 C -0.068 4.068 9 C -0.002 4.002 10 H 0.122 0.878 11 C -0.063 4.063 12 N -0.149 5.149 13 C -0.044 4.044 14 C -0.565 4.565 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.188 1.188 21 H -0.213 1.213 22 C -0.072 4.072 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.945 -5.024 -18.055 18.971 hybrid contribution 0.036 -1.960 0.564 2.040 sum -2.908 -6.984 -17.491 19.057 Atomic orbital electron populations 1.21794 0.95081 1.01674 1.01859 1.21166 0.95006 1.00477 0.94291 0.90410 1.21632 0.95606 1.00258 0.97688 1.21579 0.95824 1.01602 0.96475 1.22048 0.99843 0.94809 0.90390 1.61903 1.08121 1.54398 1.02141 1.22240 1.00752 0.95913 0.87919 1.18994 0.99765 0.85243 0.96184 0.87751 1.28675 0.92871 0.94111 0.90621 1.80986 1.10463 1.12194 1.11248 1.19646 0.96942 0.97010 0.90841 1.21028 1.36440 1.09588 0.89422 0.90786 1.24987 0.95284 0.96712 0.96111 1.69909 1.46290 1.38267 0.99071 0.86819 0.80750 0.84102 0.77879 1.20226 1.18774 1.21268 1.22236 0.87228 0.99028 0.98757 0.92304 0.92733 0.92853 0.92396 0.92143 0.91863 0.91171 0.90917 0.95029 0.90238 0.92986 0.96096 0.94575 0.92577 0.94751 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.20 37.16 0.34 -1.02 16 2 C -0.09 -0.98 2.88 -90.54 -0.26 -1.24 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.11 -1.08 5.29 -26.61 -0.14 -1.22 16 5 C -0.12 -1.16 6.09 -26.65 -0.16 -1.32 16 6 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 7 N -0.54 -7.25 4.32 -234.66 -1.01 -8.26 16 8 C 0.06 0.87 4.34 -3.82 -0.02 0.85 16 9 C 0.02 0.36 2.12 -93.41 -0.20 0.16 16 10 H 0.10 1.82 6.29 -51.93 -0.33 1.49 16 11 C 0.25 5.37 13.64 -20.76 -0.28 5.09 16 12 N -0.47 -10.92 18.54 42.15 0.78 -10.14 16 13 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 14 C -0.53 -14.29 9.15 -34.44 -0.32 -14.60 16 15 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 18 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.06 0.68 4.58 -3.83 -0.02 0.66 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 1.12 7.98 -51.93 -0.41 0.71 16 33 H 0.05 0.68 8.12 -51.93 -0.42 0.25 16 34 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 35 H 0.04 0.74 7.20 -51.93 -0.37 0.36 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 1.09 6.16 -51.93 -0.32 0.77 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -30.83 305.64 -7.26 -38.09 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.47 Total: -3.61 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.27 Total: -10.33 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.54 Total: -44.82 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.83 -7.26 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072589961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.603 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds