Wall clock time and date at job start Sun Mar 29 2020 21:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.50408 * 2 1 4 4 C 1.53118 * 109.53531 * 239.89687 * 2 1 3 5 5 C 1.53117 * 109.16350 * 182.38967 * 4 2 1 6 6 C 1.53044 * 109.27909 * 57.65145 * 5 4 2 7 7 N 1.46843 * 109.52241 * 300.82434 * 6 5 4 8 8 C 1.46905 * 111.00185 * 185.83939 * 7 6 5 9 9 C 1.52994 * 109.47387 * 169.63112 * 8 7 6 10 10 H 1.08994 * 109.47688 * 56.34159 * 9 8 7 11 11 C 1.47204 * 109.47128 * 296.34015 * 9 8 7 12 12 N 5.09419 * 131.27814 * 59.89707 * 2 1 3 13 13 C 1.52998 * 109.47050 * 176.34658 * 9 8 7 14 14 C 1.50705 * 109.47119 * 185.00012 * 13 9 8 15 15 H 1.08000 * 119.99991 * 359.97438 * 14 13 9 16 16 C 1.37871 * 119.99914 * 179.97438 * 14 13 9 17 17 N 1.31516 * 119.99879 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00223 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47237 * 89.99859 * 18 16 14 20 20 H 1.48496 * 109.47006 * 329.99800 * 18 16 14 21 21 H 1.48498 * 109.47059 * 209.99976 * 18 16 14 22 22 C 1.46851 * 111.19865 * 61.74056 * 7 6 5 23 23 H 1.09000 * 109.47013 * 299.92623 * 1 2 3 24 24 H 1.09000 * 109.46801 * 59.92571 * 1 2 3 25 25 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.52579 * 302.29106 * 4 2 1 27 27 H 1.08994 * 109.52562 * 62.48298 * 4 2 1 28 28 H 1.09000 * 109.50966 * 177.59505 * 5 4 2 29 29 H 1.09003 * 109.50259 * 297.67874 * 5 4 2 30 30 H 1.08999 * 109.46321 * 180.80873 * 6 5 4 31 31 H 1.09000 * 109.46012 * 60.83776 * 6 5 4 32 32 H 1.09004 * 109.46860 * 49.62379 * 8 7 6 33 33 H 1.09006 * 109.46741 * 289.63154 * 8 7 6 34 34 H 1.09000 * 109.47521 * 64.99272 * 13 9 8 35 35 H 1.09000 * 109.46863 * 304.99452 * 13 9 8 36 36 H 0.97006 * 120.00120 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46100 * 58.27723 * 22 7 6 38 38 H 1.09004 * 109.46149 * 178.23641 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7238 -1.2484 5 6 3.5720 -0.7712 -1.2099 6 6 4.0237 -1.4718 0.0736 7 7 3.5093 -0.7409 1.2387 8 6 4.0371 -1.3041 2.4886 9 6 3.6945 -0.3722 3.6526 10 1 2.6163 -0.2174 3.6890 11 6 4.3697 0.9217 3.4604 12 7 4.8907 1.9201 3.3120 13 6 4.1640 -1.0022 4.9655 14 6 3.7186 -0.1445 6.1218 15 1 3.1573 0.7598 5.9386 16 6 4.0278 -0.5142 7.4135 17 7 3.6396 0.2346 8.4226 18 14 4.9981 -2.0787 7.7305 19 1 6.4503 -1.7680 7.7360 20 1 4.7074 -3.0667 6.6608 21 1 4.6081 -2.6449 9.0467 22 6 2.0409 -0.7230 1.2483 23 1 -0.3633 0.5127 0.8906 24 1 -0.3633 0.5150 -0.8893 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6466 -1.7394 -1.2686 27 1 1.7166 -0.1874 -2.1397 28 1 3.9410 -1.3226 -2.0747 29 1 3.9681 0.2441 -1.2296 30 1 5.1128 -1.4944 0.1110 31 1 3.6387 -2.4914 0.0855 32 1 5.1195 -1.4072 2.4120 33 1 3.5904 -2.2830 2.6632 34 1 5.2515 -1.0754 4.9650 35 1 3.7329 -1.9984 5.0649 36 1 3.8568 -0.0257 9.3315 37 1 1.6653 -1.7462 1.2548 38 1 1.6899 -0.2018 2.1391 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072589961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:19 Heat of formation + Delta-G solvation = -15.619923 kcal Electronic energy + Delta-G solvation = -16863.771434 eV Core-core repulsion = 14318.328897 eV Total energy + Delta-G solvation = -2545.442537 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31463 -38.07386 -35.87097 -34.97694 -33.55777 -32.42119 -29.00893 -27.51639 -25.80933 -23.54428 -22.99135 -22.39390 -20.51421 -18.90851 -18.23809 -16.99535 -16.17751 -15.94242 -15.67836 -15.32129 -15.06675 -14.91297 -14.51888 -14.14734 -13.96942 -13.65326 -13.44446 -13.33486 -13.16128 -12.86542 -12.75290 -12.61857 -12.31966 -11.86628 -11.82888 -11.70806 -11.67075 -11.47860 -11.37699 -11.14292 -10.91627 -10.73553 -9.15645 -8.24689 -6.30556 1.43379 1.44486 1.55606 2.04890 2.12861 2.41081 2.94898 3.11863 3.32956 3.87122 3.91275 3.99118 4.18469 4.31859 4.34606 4.51039 4.56760 4.64395 4.68146 4.74489 4.80593 4.87951 4.94007 4.96889 4.99807 5.07182 5.17845 5.24008 5.29248 5.35356 5.43170 5.44948 5.58562 5.63612 6.16682 6.28019 6.28358 6.76705 6.90663 7.33874 8.92341 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.005734 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.626032 B = 4882.055247 C = 4989.744396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.054 0.946 4 C -0.110 4.110 5 C -0.115 4.115 6 C 0.056 3.944 7 N -0.560 5.560 8 C 0.070 3.930 9 C 0.025 3.975 10 H 0.110 0.890 11 C 0.264 3.736 12 N -0.516 5.516 13 C -0.002 4.002 14 C -0.531 4.531 15 H 0.027 0.973 16 C 0.003 3.997 17 N -0.954 5.954 18 Si 0.948 3.052 19 H -0.276 1.276 20 H -0.223 1.223 21 H -0.289 1.289 22 C 0.054 3.946 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.064 0.936 36 H 0.265 0.735 37 H 0.048 0.952 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 -10.084 -19.903 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 H 0.073 0.927 4 C -0.147 4.147 5 C -0.153 4.153 6 C -0.071 4.071 7 N -0.285 5.285 8 C -0.059 4.059 9 C 0.003 3.997 10 H 0.127 0.873 11 C -0.052 4.052 12 N -0.194 5.194 13 C -0.041 4.041 14 C -0.569 4.569 15 H 0.045 0.955 16 C -0.193 4.193 17 N -0.595 5.595 18 Si 0.771 3.229 19 H -0.202 1.202 20 H -0.145 1.145 21 H -0.215 1.215 22 C -0.073 4.073 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.707 -8.087 -20.008 21.749 hybrid contribution -0.103 -0.890 1.141 1.451 sum -2.810 -8.977 -18.867 21.082 Atomic orbital electron populations 1.21764 0.93963 1.02372 1.01938 1.21147 0.95941 0.99218 0.94610 0.92712 1.21608 0.95216 1.00759 0.97128 1.21579 0.96155 1.00784 0.96777 1.22116 0.99944 0.95346 0.89693 1.61846 1.08806 1.55410 1.02464 1.22114 1.01402 0.95527 0.86846 1.19100 0.99600 0.84372 0.96634 0.87273 1.29385 0.92011 0.94423 0.89355 1.80978 1.12036 1.13554 1.12791 1.19591 0.97266 0.97246 0.90029 1.21388 1.35219 1.08708 0.91617 0.95474 1.26046 0.96662 1.00860 0.95780 1.70093 1.48695 1.41020 0.99698 0.85692 0.78507 0.79960 0.78724 1.20171 1.14529 1.21479 1.22254 0.86753 0.99673 0.98669 0.93193 0.91766 0.91780 0.91221 0.91212 0.89790 0.92959 0.90819 0.93552 0.89663 0.90495 0.95513 0.91802 0.92640 0.93380 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.20 71.98 0.66 -1.75 16 2 C -0.09 -1.82 2.88 -10.74 -0.03 -1.85 16 3 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.11 -1.78 5.29 30.67 0.16 -1.62 16 5 C -0.12 -2.00 6.09 30.65 0.19 -1.81 16 6 C 0.06 1.09 5.46 86.33 0.47 1.56 16 7 N -0.56 -13.82 4.32 -896.33 -3.87 -17.69 16 8 C 0.07 1.81 4.34 86.30 0.37 2.18 16 9 C 0.02 0.87 2.12 -12.60 -0.03 0.84 16 10 H 0.11 3.74 6.29 -2.39 -0.02 3.73 16 11 C 0.26 11.21 13.64 89.44 1.22 12.43 16 12 N -0.52 -24.35 18.54 20.01 0.37 -23.97 16 13 C 0.00 -0.10 3.49 29.85 0.10 0.01 16 14 C -0.53 -29.10 9.15 25.60 0.23 -28.86 16 15 H 0.03 1.69 7.84 -2.91 -0.02 1.66 16 16 C 0.00 0.18 5.47 84.65 0.46 0.64 16 17 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 18 Si 0.95 41.65 27.47 68.60 1.88 43.53 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.22 -8.30 6.54 99.48 0.65 -7.65 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 22 C 0.05 1.23 4.58 86.32 0.40 1.62 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.41 8.01 -2.39 -0.02 1.39 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 2.13 7.98 -2.39 -0.02 2.11 16 33 H 0.08 1.64 8.12 -2.38 -0.02 1.62 16 34 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 35 H 0.06 2.33 7.20 -2.39 -0.02 2.31 16 36 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.67 6.16 -2.38 -0.01 1.65 16 Total: -1.00 -68.68 305.64 3.85 -64.83 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.95 Total: 9.19 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 4.22 Total: -16.62 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -3.20 Total: -100.93 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.53 kcal Total: -68.68 3.85 -64.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072589961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.211 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds