Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.50370 * 2 1 4 4 C 1.53114 * 109.50534 * 120.07990 * 2 1 3 5 5 C 1.53122 * 109.16003 * 177.55179 * 4 2 1 6 6 C 1.53031 * 109.30918 * 302.40578 * 5 4 2 7 7 N 1.46849 * 109.52437 * 59.15779 * 6 5 4 8 8 C 1.46907 * 110.99693 * 174.16050 * 7 6 5 9 9 C 1.53003 * 109.47122 * 294.08943 * 8 7 6 10 10 H 1.09007 * 109.46793 * 56.95648 * 9 8 7 11 11 C 1.47195 * 109.47172 * 296.95674 * 9 8 7 12 12 N 5.41638 * 146.46177 * 299.65138 * 2 1 3 13 13 C 1.52994 * 109.46970 * 176.95282 * 9 8 7 14 14 C 1.50696 * 109.47223 * 185.00112 * 13 9 8 15 15 H 1.08005 * 119.99963 * 0.02562 * 14 13 9 16 16 C 1.37875 * 120.00284 * 180.02562 * 14 13 9 17 17 N 1.31513 * 120.00201 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00041 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46913 * 90.00156 * 18 16 14 20 20 H 1.48492 * 109.47307 * 210.00262 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00243 * 18 16 14 22 22 C 1.46847 * 111.19593 * 298.25339 * 7 6 5 23 23 H 1.08992 * 109.47109 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46385 * 300.08046 * 1 2 3 25 25 H 1.09000 * 109.46905 * 60.07401 * 1 2 3 26 26 H 1.09001 * 109.49541 * 57.66430 * 4 2 1 27 27 H 1.09001 * 109.55971 * 297.47982 * 4 2 1 28 28 H 1.09004 * 109.50012 * 182.44338 * 5 4 2 29 29 H 1.09000 * 109.49753 * 62.36498 * 5 4 2 30 30 H 1.08999 * 109.46453 * 179.17540 * 6 5 4 31 31 H 1.09008 * 109.46327 * 299.15174 * 6 5 4 32 32 H 1.08994 * 109.47394 * 54.09296 * 8 7 6 33 33 H 1.09002 * 109.46725 * 174.09420 * 8 7 6 34 34 H 1.08996 * 109.47473 * 305.00684 * 13 9 8 35 35 H 1.09006 * 109.47017 * 65.00136 * 13 9 8 36 36 H 0.96995 * 120.00170 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.45772 * 181.75646 * 22 7 6 38 38 H 1.08999 * 109.46388 * 301.73943 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7234 1.2489 5 6 3.5712 -0.7724 1.2103 6 6 4.0229 -1.4730 -0.0730 7 7 3.5092 -0.7417 -1.2383 8 6 4.0371 -1.3051 -2.4881 9 6 5.5491 -1.0795 -2.5506 10 1 6.0193 -1.5235 -1.6731 11 6 5.8288 0.3654 -2.5789 12 7 6.0447 1.4805 -2.6007 13 6 6.1103 -1.7325 -3.8152 14 6 7.6129 -1.6173 -3.8157 15 1 8.1172 -1.1276 -2.9957 16 6 8.3438 -2.1369 -4.8628 17 7 9.6552 -2.0368 -4.8630 18 14 7.4718 -2.9845 -6.2808 19 1 7.1461 -1.9852 -7.3299 20 1 8.3570 -4.0311 -6.8518 21 1 6.2188 -3.6109 -5.7878 22 6 2.0408 -0.7231 -1.2483 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5151 0.8893 25 1 -0.3633 0.5127 -0.8907 26 1 1.6447 -1.7385 1.2693 27 1 1.7164 -0.1866 2.1402 28 1 3.9395 -1.3243 2.0752 29 1 3.9684 0.2424 1.2300 30 1 5.1120 -1.4964 -0.1102 31 1 3.6372 -2.4925 -0.0853 32 1 3.8276 -2.3742 -2.5217 33 1 3.5611 -0.8147 -3.3372 34 1 5.8266 -2.7847 -3.8374 35 1 5.7070 -1.2289 -4.6938 36 1 10.1694 -2.4020 -5.5998 37 1 1.6904 -0.2016 -2.1390 38 1 1.6647 -1.7461 -1.2548 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072589964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = 3.510529 kcal Electronic energy + Delta-G solvation = -16801.173245 eV Core-core repulsion = 14256.560267 eV Total energy + Delta-G solvation = -2544.612979 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.33700 -36.62676 -34.46265 -33.27402 -32.03941 -31.38289 -27.54800 -26.56185 -24.42658 -22.61782 -21.47632 -21.20789 -19.67385 -16.87634 -16.68317 -15.84706 -15.15248 -14.61245 -14.40376 -14.15296 -14.14389 -13.33722 -13.20495 -12.89931 -12.58081 -12.47571 -12.14028 -11.97688 -11.94989 -11.54062 -11.34846 -11.24107 -11.04195 -10.84410 -10.68085 -10.50071 -10.35672 -10.11478 -9.93861 -9.69307 -9.30496 -8.60931 -8.19479 -6.09862 -4.10414 3.27354 3.34804 3.35215 3.72639 3.81725 3.96065 4.38877 4.64307 4.77594 4.78150 4.88936 5.07547 5.25122 5.30595 5.37270 5.42826 5.48310 5.53313 5.55702 5.66220 5.71508 5.74142 5.86067 5.93631 5.97590 6.02681 6.10799 6.16816 6.25561 6.35770 6.38272 6.95640 7.10672 7.17239 7.22330 7.64814 8.41799 8.59003 8.93876 9.50048 11.03299 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.037933 B = 0.005463 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.965347 B = 5124.024575 C = 5299.851319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.118 4.118 6 C 0.050 3.950 7 N -0.541 5.541 8 C 0.060 3.940 9 C 0.020 3.980 10 H 0.105 0.895 11 C 0.255 3.745 12 N -0.472 5.472 13 C -0.005 4.005 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.263 1.263 22 C 0.063 3.937 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.072 0.928 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.768 -1.786 9.758 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.078 4.078 7 N -0.266 5.266 8 C -0.068 4.068 9 C -0.002 4.002 10 H 0.123 0.877 11 C -0.063 4.063 12 N -0.149 5.149 13 C -0.044 4.044 14 C -0.565 4.565 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.188 1.188 22 C -0.065 4.065 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -17.111 0.332 9.660 19.652 hybrid contribution -0.555 -1.726 -0.923 2.034 sum -17.666 -1.393 8.737 19.757 Atomic orbital electron populations 1.21792 0.95242 1.01601 1.01681 1.21172 0.94785 1.00522 0.94497 0.90407 1.21632 0.95897 1.00182 0.97463 1.21582 0.95469 1.01740 0.96746 1.22181 1.00860 0.94723 0.90044 1.61908 1.07566 1.54628 1.02452 1.22239 0.94412 0.98362 0.91804 1.18997 0.94133 0.83662 1.03402 0.87738 1.28667 0.91461 0.94478 0.91660 1.80986 1.10167 1.13497 1.10240 1.19643 0.97674 0.96023 0.91092 1.21028 0.88943 1.38378 1.08150 0.90786 1.24985 0.94689 0.95459 0.97938 1.69904 1.05406 1.45863 1.32367 0.86819 0.80007 0.79772 0.82953 1.20229 1.21270 1.18774 1.22098 0.87465 0.98688 0.98270 0.92883 0.92651 0.92648 0.92400 0.92135 0.91637 0.91154 0.89936 0.94783 0.92988 0.90255 0.94576 0.96100 0.92574 0.90941 0.94988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.20 37.16 0.34 -0.84 16 2 C -0.09 -0.91 2.88 -90.54 -0.26 -1.17 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.08 5.29 -26.61 -0.14 -1.22 16 5 C -0.12 -1.25 6.09 -26.65 -0.16 -1.42 16 6 C 0.05 0.60 5.30 -3.84 -0.02 0.58 16 7 N -0.54 -7.25 4.30 -234.66 -1.01 -8.26 16 8 C 0.06 0.87 4.34 -3.82 -0.02 0.85 16 9 C 0.02 0.36 2.11 -93.41 -0.20 0.16 16 10 H 0.10 1.81 6.30 -51.93 -0.33 1.48 16 11 C 0.25 5.37 13.62 -20.76 -0.28 5.08 16 12 N -0.47 -10.92 18.54 42.15 0.78 -10.14 16 13 C -0.01 -0.12 3.49 -27.89 -0.10 -0.21 16 14 C -0.53 -14.29 9.15 -34.44 -0.32 -14.60 16 15 H 0.07 2.21 7.84 -52.48 -0.41 1.79 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 18 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 22 C 0.06 0.71 4.74 -3.83 -0.02 0.69 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.07 6.16 -51.93 -0.32 0.75 16 31 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 32 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.08 1.12 7.99 -51.93 -0.41 0.71 16 34 H 0.04 0.74 7.20 -51.93 -0.37 0.36 16 35 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 0.81 8.01 -51.93 -0.42 0.40 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -30.83 305.63 -7.26 -38.09 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -6.47 Total: -3.76 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.27 Total: -10.18 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.54 Total: -44.80 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.83 -7.26 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072589964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.601 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds