Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.50370 * 2 1 4 4 C 1.53114 * 109.50534 * 120.07990 * 2 1 3 5 5 C 1.53122 * 109.16003 * 177.55179 * 4 2 1 6 6 C 1.53031 * 109.30918 * 302.40578 * 5 4 2 7 7 N 1.46849 * 109.52437 * 59.15779 * 6 5 4 8 8 C 1.46907 * 110.99693 * 174.16050 * 7 6 5 9 9 C 1.53003 * 109.47122 * 294.08943 * 8 7 6 10 10 H 1.09007 * 109.46793 * 56.95648 * 9 8 7 11 11 C 1.47195 * 109.47172 * 296.95674 * 9 8 7 12 12 N 5.41638 * 146.46177 * 299.65138 * 2 1 3 13 13 C 1.52994 * 109.46970 * 176.95282 * 9 8 7 14 14 C 1.50696 * 109.47223 * 185.00112 * 13 9 8 15 15 H 1.08005 * 119.99963 * 0.02562 * 14 13 9 16 16 C 1.37875 * 120.00284 * 180.02562 * 14 13 9 17 17 N 1.31513 * 120.00201 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00041 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46913 * 90.00156 * 18 16 14 20 20 H 1.48492 * 109.47307 * 210.00262 * 18 16 14 21 21 H 1.48500 * 109.47075 * 330.00243 * 18 16 14 22 22 C 1.46847 * 111.19593 * 298.25339 * 7 6 5 23 23 H 1.08992 * 109.47109 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46385 * 300.08046 * 1 2 3 25 25 H 1.09000 * 109.46905 * 60.07401 * 1 2 3 26 26 H 1.09001 * 109.49541 * 57.66430 * 4 2 1 27 27 H 1.09001 * 109.55971 * 297.47982 * 4 2 1 28 28 H 1.09004 * 109.50012 * 182.44338 * 5 4 2 29 29 H 1.09000 * 109.49753 * 62.36498 * 5 4 2 30 30 H 1.08999 * 109.46453 * 179.17540 * 6 5 4 31 31 H 1.09008 * 109.46327 * 299.15174 * 6 5 4 32 32 H 1.08994 * 109.47394 * 54.09296 * 8 7 6 33 33 H 1.09002 * 109.46725 * 174.09420 * 8 7 6 34 34 H 1.08996 * 109.47473 * 305.00684 * 13 9 8 35 35 H 1.09006 * 109.47017 * 65.00136 * 13 9 8 36 36 H 0.96995 * 120.00170 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.45772 * 181.75646 * 22 7 6 38 38 H 1.08999 * 109.46388 * 301.73943 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7234 1.2489 5 6 3.5712 -0.7724 1.2103 6 6 4.0229 -1.4730 -0.0730 7 7 3.5092 -0.7417 -1.2383 8 6 4.0371 -1.3051 -2.4881 9 6 5.5491 -1.0795 -2.5506 10 1 6.0193 -1.5235 -1.6731 11 6 5.8288 0.3654 -2.5789 12 7 6.0447 1.4805 -2.6007 13 6 6.1103 -1.7325 -3.8152 14 6 7.6129 -1.6173 -3.8157 15 1 8.1172 -1.1276 -2.9957 16 6 8.3438 -2.1369 -4.8628 17 7 9.6552 -2.0368 -4.8630 18 14 7.4718 -2.9845 -6.2808 19 1 7.1461 -1.9852 -7.3299 20 1 8.3570 -4.0311 -6.8518 21 1 6.2188 -3.6109 -5.7878 22 6 2.0408 -0.7231 -1.2483 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5151 0.8893 25 1 -0.3633 0.5127 -0.8907 26 1 1.6447 -1.7385 1.2693 27 1 1.7164 -0.1866 2.1402 28 1 3.9395 -1.3243 2.0752 29 1 3.9684 0.2424 1.2300 30 1 5.1120 -1.4964 -0.1102 31 1 3.6372 -2.4925 -0.0853 32 1 3.8276 -2.3742 -2.5217 33 1 3.5611 -0.8147 -3.3372 34 1 5.8266 -2.7847 -3.8374 35 1 5.7070 -1.2289 -4.6938 36 1 10.1694 -2.4020 -5.5998 37 1 1.6904 -0.2016 -2.1390 38 1 1.6647 -1.7461 -1.2548 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072589964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = -15.590616 kcal Electronic energy + Delta-G solvation = -16802.001533 eV Core-core repulsion = 14256.560267 eV Total energy + Delta-G solvation = -2545.441266 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30747 -38.09611 -35.89366 -34.97245 -33.31548 -32.63835 -29.13508 -27.35391 -25.72217 -23.55563 -23.28147 -22.23403 -20.49653 -18.90530 -18.18671 -16.98775 -16.24836 -16.01984 -15.60430 -15.23350 -15.04626 -14.91128 -14.57799 -14.27333 -14.00109 -13.65007 -13.38091 -13.27640 -13.14350 -12.84706 -12.67133 -12.63233 -12.36399 -11.88792 -11.86555 -11.72338 -11.68361 -11.46821 -11.39150 -11.05553 -10.96292 -10.73349 -9.15769 -8.24449 -6.30291 1.43619 1.44651 1.55770 2.05329 2.13335 2.41301 2.94584 3.12147 3.33323 3.85547 3.94041 4.01803 4.12365 4.30817 4.36081 4.51103 4.55659 4.66434 4.69679 4.75368 4.79243 4.86790 4.93037 4.94464 5.00035 5.09356 5.18216 5.24449 5.28523 5.35405 5.43227 5.44347 5.58377 5.63970 6.16578 6.27794 6.28502 6.77024 6.91155 7.34182 8.92592 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.037933 B = 0.005463 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.965347 B = 5124.024575 C = 5299.851319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.057 0.943 4 C -0.110 4.110 5 C -0.116 4.116 6 C 0.047 3.953 7 N -0.560 5.560 8 C 0.070 3.930 9 C 0.025 3.975 10 H 0.111 0.889 11 C 0.265 3.735 12 N -0.516 5.516 13 C -0.002 4.002 14 C -0.531 4.531 15 H 0.027 0.973 16 C 0.004 3.996 17 N -0.954 5.954 18 Si 0.948 3.052 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.223 1.223 22 C 0.063 3.937 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.071 0.929 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.858 -3.557 9.639 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.080 4.080 7 N -0.285 5.285 8 C -0.059 4.059 9 C 0.003 3.997 10 H 0.129 0.871 11 C -0.052 4.052 12 N -0.194 5.194 13 C -0.041 4.041 14 C -0.569 4.569 15 H 0.046 0.954 16 C -0.193 4.193 17 N -0.595 5.595 18 Si 0.771 3.229 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.145 1.145 22 C -0.064 4.064 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.236 -1.436 9.569 22.431 hybrid contribution 0.480 -1.108 -0.790 1.443 sum -19.757 -2.544 8.780 21.769 Atomic orbital electron populations 1.21743 0.93582 1.02332 1.02107 1.21158 0.96111 0.99261 0.94398 0.92469 1.21610 0.94699 1.00872 0.97528 1.21574 0.96587 1.00588 0.96683 1.22214 1.00023 0.95574 0.90202 1.61850 1.09110 1.55244 1.02308 1.22111 0.91068 1.00015 0.92679 1.19105 0.97248 0.81250 1.02104 0.87125 1.29381 0.90137 0.95188 0.90448 1.80978 1.11769 1.15070 1.11575 1.19588 0.93722 0.97984 0.92842 1.21390 0.92115 1.36939 1.06501 0.95438 1.26038 0.95302 0.96552 1.01403 1.70087 1.07666 1.48002 1.33752 0.85695 0.80114 0.78468 0.78620 1.20203 1.21486 1.14539 1.22150 0.85924 0.99578 0.98774 0.91931 0.91965 0.92583 0.91238 0.91236 0.90255 0.93191 0.91461 0.93289 0.90462 0.89783 0.91789 0.95563 0.92639 0.91066 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.20 71.98 0.66 -1.25 16 2 C -0.09 -1.63 2.88 -10.74 -0.03 -1.66 16 3 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.80 5.29 30.67 0.16 -1.64 16 5 C -0.12 -2.31 6.09 30.65 0.19 -2.12 16 6 C 0.05 1.06 5.30 86.32 0.46 1.51 16 7 N -0.56 -13.84 4.30 -896.34 -3.86 -17.69 16 8 C 0.07 1.81 4.34 86.30 0.37 2.18 16 9 C 0.02 0.86 2.11 -12.60 -0.03 0.83 16 10 H 0.11 3.75 6.30 -2.38 -0.02 3.73 16 11 C 0.26 11.20 13.62 89.44 1.22 12.41 16 12 N -0.52 -24.34 18.54 20.00 0.37 -23.97 16 13 C 0.00 -0.10 3.49 29.84 0.10 0.01 16 14 C -0.53 -29.05 9.15 25.60 0.23 -28.81 16 15 H 0.03 1.70 7.84 -2.91 -0.02 1.68 16 16 C 0.00 0.21 5.47 84.65 0.46 0.67 16 17 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 18 Si 0.95 41.62 27.47 68.60 1.88 43.50 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.22 -8.30 6.54 99.48 0.65 -7.65 16 22 C 0.06 1.25 4.74 86.33 0.41 1.66 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.68 6.16 -2.39 -0.01 1.67 16 31 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 33 H 0.08 2.11 7.99 -2.39 -0.02 2.09 16 34 H 0.06 2.32 7.20 -2.39 -0.02 2.31 16 35 H 0.03 1.06 7.57 -2.38 -0.02 1.04 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.07 1.42 8.01 -2.39 -0.02 1.40 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -68.55 305.63 3.87 -64.68 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.95 Total: 8.86 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 4.21 Total: -16.19 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -3.19 Total: -100.86 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.88 Total: 43.50 kcal Total: -68.55 3.87 -64.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072589964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.094 kcal (2) G-P(sol) polarization free energy of solvation -68.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds