Wall clock time and date at job start Sun Mar 29 2020 21:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53119 * 109.57248 * 2 1 4 4 C 1.53042 * 109.27507 * 177.58649 * 3 2 1 5 5 N 1.46840 * 109.52428 * 300.81955 * 4 3 2 6 6 C 1.46907 * 110.99711 * 185.84097 * 5 4 3 7 7 C 1.53005 * 109.46839 * 160.01107 * 6 5 4 8 8 H 1.09002 * 109.46953 * 55.34666 * 7 6 5 9 9 C 1.47193 * 109.46984 * 295.34363 * 7 6 5 10 10 N 6.03055 * 123.28350 * 61.05253 * 2 1 3 11 11 C 1.53002 * 109.46879 * 175.34468 * 7 6 5 12 12 C 1.50702 * 109.47033 * 185.00092 * 11 7 6 13 13 H 1.08004 * 119.99700 * 359.97438 * 12 11 7 14 14 C 1.37879 * 119.99999 * 179.97438 * 12 11 7 15 15 N 1.31512 * 119.99990 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99909 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47184 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47103 * 120.00236 * 16 14 12 19 19 H 1.48503 * 109.47016 * 240.00168 * 16 14 12 20 20 C 1.46848 * 111.19862 * 61.74446 * 5 4 3 21 21 C 1.53032 * 109.52130 * 298.25640 * 20 5 4 22 22 H 1.08994 * 109.47171 * 300.15986 * 1 2 3 23 23 H 1.09002 * 109.46863 * 60.16642 * 1 2 3 24 24 H 1.09004 * 109.46864 * 180.15968 * 1 2 3 25 25 H 1.08999 * 109.52728 * 239.83450 * 2 1 3 26 26 H 1.08997 * 109.50494 * 297.52166 * 3 2 1 27 27 H 1.08992 * 109.50431 * 57.64875 * 3 2 1 28 28 H 1.09001 * 109.45980 * 180.79871 * 4 3 2 29 29 H 1.09001 * 109.45307 * 60.83503 * 4 3 2 30 30 H 1.09000 * 109.47285 * 280.00904 * 6 5 4 31 31 H 1.08998 * 109.47424 * 40.00983 * 6 5 4 32 32 H 1.08999 * 109.46993 * 305.00152 * 11 7 6 33 33 H 1.08997 * 109.47212 * 65.00222 * 11 7 6 34 34 H 0.96999 * 119.99949 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.45859 * 178.24169 * 20 5 4 36 36 H 1.08998 * 109.45535 * 58.26754 * 20 5 4 37 37 H 1.09004 * 109.50574 * 299.24084 * 21 20 5 38 38 H 1.08996 * 109.53597 * 179.14362 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4352 0.0608 5 7 4.0115 0.7406 1.2777 6 6 5.4685 0.8342 1.4403 7 6 5.8371 0.5633 2.9004 8 1 5.4318 -0.4019 3.2043 9 6 5.2740 1.6226 3.7532 10 7 4.8395 2.4400 4.4115 11 6 7.3600 0.5459 3.0471 12 6 7.7244 0.1583 4.4571 13 1 6.9475 -0.0540 5.1766 14 6 9.0496 0.0747 4.8284 15 7 9.9956 0.3327 3.9520 16 14 9.5013 -0.4050 6.5763 17 1 8.2626 -0.6423 7.3603 18 1 10.3176 -1.6453 6.5539 19 1 10.2828 0.6907 7.2040 20 6 3.5708 -0.6602 1.2779 21 6 2.0417 -0.7153 1.2535 22 1 -0.3633 0.5163 0.8885 23 1 -0.3633 0.5113 -0.8915 24 1 -0.3633 -1.0277 0.0029 25 1 1.8943 -0.5162 -0.8882 26 1 1.7175 1.9447 -0.9112 27 1 1.6469 1.9698 0.8679 28 1 3.9400 2.4611 0.0753 29 1 3.9677 0.9199 -0.8145 30 1 5.9536 0.0972 0.8003 31 1 5.8019 1.8336 1.1608 32 1 7.7839 -0.1773 2.3503 33 1 7.7574 1.5370 2.8285 34 1 10.9279 0.2743 4.2133 35 1 3.9378 -1.1561 2.1765 36 1 3.9666 -1.1654 0.3969 37 1 1.6455 -0.2221 2.1411 38 1 1.7146 -1.7549 1.2383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072590025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:16 Heat of formation + Delta-G solvation = -1.789900 kcal Electronic energy + Delta-G solvation = -16705.526638 eV Core-core repulsion = 14160.683815 eV Total energy + Delta-G solvation = -2544.842822 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.22916 -36.54986 -34.56787 -33.38178 -31.56121 -30.78755 -28.37853 -26.09611 -23.41538 -23.04487 -21.70027 -21.39725 -19.63046 -16.69134 -16.46776 -15.66584 -14.79213 -14.61583 -14.50824 -14.33176 -14.04419 -13.29201 -13.19891 -12.67432 -12.35762 -12.26371 -12.12634 -11.97248 -11.79937 -11.30253 -11.20279 -11.15378 -11.03816 -10.73147 -10.66183 -10.51418 -10.37209 -10.28925 -10.01607 -9.49638 -9.18289 -8.44538 -8.12009 -6.08245 -4.11032 3.29474 3.37692 3.42624 3.78556 3.89270 4.04821 4.42985 4.71051 4.75694 4.78490 4.96017 5.22858 5.30093 5.33748 5.38721 5.49430 5.56563 5.58764 5.65161 5.67641 5.79727 5.86363 5.90162 6.03390 6.06562 6.08559 6.15362 6.16343 6.40763 6.43429 6.55686 7.25698 7.28586 7.45049 7.55683 7.87573 8.25484 8.64550 8.94150 9.54423 11.02781 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.043170 B = 0.004956 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.449426 B = 5648.465321 C = 5680.930301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.111 4.111 4 C 0.057 3.943 5 N -0.542 5.542 6 C 0.062 3.938 7 C 0.013 3.987 8 H 0.099 0.901 9 C 0.259 3.741 10 N -0.483 5.483 11 C 0.030 3.970 12 C -0.524 4.524 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.052 3.948 21 C -0.112 4.112 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.081 0.919 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.062 -2.792 -10.760 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.149 4.149 4 C -0.071 4.071 5 N -0.266 5.266 6 C -0.066 4.066 7 C -0.009 4.009 8 H 0.116 0.884 9 C -0.058 4.058 10 N -0.160 5.160 11 C -0.008 4.008 12 C -0.562 4.562 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.075 4.075 21 C -0.149 4.149 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.754 -1.317 -9.390 17.539 hybrid contribution 0.993 -0.973 0.040 1.390 sum -13.762 -2.290 -9.350 16.795 Atomic orbital electron populations 1.21809 0.95396 1.01442 1.01621 1.21182 0.95349 0.96380 0.98339 1.21643 0.94999 0.96375 1.01875 1.22061 0.95498 0.98925 0.90631 1.61924 1.13154 1.14183 1.37376 1.22223 0.86243 1.02231 0.95929 1.19209 0.99711 0.92677 0.89338 0.88360 1.28851 0.90835 0.93534 0.92579 1.80967 1.12135 1.11866 1.11027 1.19182 0.84872 0.98638 0.98137 1.21189 0.92044 1.46976 0.96026 0.92451 1.24952 0.96542 0.95137 0.97353 1.69948 0.99996 1.49027 1.34138 0.86544 0.78592 0.78154 0.84849 1.19655 1.20878 1.20969 1.22145 0.95341 0.88880 1.01169 1.21647 0.95101 0.99966 0.98222 0.92641 0.92984 0.92887 0.91700 0.91944 0.91160 0.90895 0.95059 0.92724 0.90480 0.94507 0.95617 0.92883 0.90114 0.94877 0.91148 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.20 37.16 0.34 -0.88 16 2 C -0.09 -0.91 2.79 -90.50 -0.25 -1.16 16 3 C -0.11 -1.16 5.38 -26.65 -0.14 -1.31 16 4 C 0.06 0.67 5.43 -3.83 -0.02 0.65 16 5 N -0.54 -7.52 4.28 -234.67 -1.00 -8.52 16 6 C 0.06 0.95 4.37 -3.82 -0.02 0.94 16 7 C 0.01 0.24 2.27 -93.41 -0.21 0.03 16 8 H 0.10 1.76 6.71 -51.93 -0.35 1.41 16 9 C 0.26 5.54 13.66 -20.76 -0.28 5.26 16 10 N -0.48 -11.20 18.54 42.15 0.78 -10.42 16 11 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 12 C -0.52 -14.08 8.60 -34.44 -0.30 -14.38 16 13 H 0.06 1.54 7.59 -52.48 -0.40 1.15 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 16 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 C 0.05 0.64 5.29 -3.84 -0.02 0.62 16 21 C -0.11 -1.20 5.38 -26.65 -0.14 -1.34 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 31 H 0.08 1.19 7.79 -51.93 -0.40 0.78 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.08 1.03 6.65 -51.93 -0.35 0.69 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -29.76 309.88 -7.64 -37.39 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -6.53 Total: -5.23 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.27 Total: -9.36 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.51 Total: -43.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.76 -7.64 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072590025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.601 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds