Wall clock time and date at job start Sun Mar 29 2020 21:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53119 * 109.57248 * 2 1 4 4 C 1.53042 * 109.27507 * 177.58649 * 3 2 1 5 5 N 1.46840 * 109.52428 * 300.81955 * 4 3 2 6 6 C 1.46907 * 110.99711 * 185.84097 * 5 4 3 7 7 C 1.53005 * 109.46839 * 160.01107 * 6 5 4 8 8 H 1.09002 * 109.46953 * 55.34666 * 7 6 5 9 9 C 1.47193 * 109.46984 * 295.34363 * 7 6 5 10 10 N 6.03055 * 123.28350 * 61.05253 * 2 1 3 11 11 C 1.53002 * 109.46879 * 175.34468 * 7 6 5 12 12 C 1.50702 * 109.47033 * 185.00092 * 11 7 6 13 13 H 1.08004 * 119.99700 * 359.97438 * 12 11 7 14 14 C 1.37879 * 119.99999 * 179.97438 * 12 11 7 15 15 N 1.31512 * 119.99990 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99909 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47184 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47103 * 120.00236 * 16 14 12 19 19 H 1.48503 * 109.47016 * 240.00168 * 16 14 12 20 20 C 1.46848 * 111.19862 * 61.74446 * 5 4 3 21 21 C 1.53032 * 109.52130 * 298.25640 * 20 5 4 22 22 H 1.08994 * 109.47171 * 300.15986 * 1 2 3 23 23 H 1.09002 * 109.46863 * 60.16642 * 1 2 3 24 24 H 1.09004 * 109.46864 * 180.15968 * 1 2 3 25 25 H 1.08999 * 109.52728 * 239.83450 * 2 1 3 26 26 H 1.08997 * 109.50494 * 297.52166 * 3 2 1 27 27 H 1.08992 * 109.50431 * 57.64875 * 3 2 1 28 28 H 1.09001 * 109.45980 * 180.79871 * 4 3 2 29 29 H 1.09001 * 109.45307 * 60.83503 * 4 3 2 30 30 H 1.09000 * 109.47285 * 280.00904 * 6 5 4 31 31 H 1.08998 * 109.47424 * 40.00983 * 6 5 4 32 32 H 1.08999 * 109.46993 * 305.00152 * 11 7 6 33 33 H 1.08997 * 109.47212 * 65.00222 * 11 7 6 34 34 H 0.96999 * 119.99949 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.45859 * 178.24169 * 20 5 4 36 36 H 1.08998 * 109.45535 * 58.26754 * 20 5 4 37 37 H 1.09004 * 109.50574 * 299.24084 * 21 20 5 38 38 H 1.08996 * 109.53597 * 179.14362 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4352 0.0608 5 7 4.0115 0.7406 1.2777 6 6 5.4685 0.8342 1.4403 7 6 5.8371 0.5633 2.9004 8 1 5.4318 -0.4019 3.2043 9 6 5.2740 1.6226 3.7532 10 7 4.8395 2.4400 4.4115 11 6 7.3600 0.5459 3.0471 12 6 7.7244 0.1583 4.4571 13 1 6.9475 -0.0540 5.1766 14 6 9.0496 0.0747 4.8284 15 7 9.9956 0.3327 3.9520 16 14 9.5013 -0.4050 6.5763 17 1 8.2626 -0.6423 7.3603 18 1 10.3176 -1.6453 6.5539 19 1 10.2828 0.6907 7.2040 20 6 3.5708 -0.6602 1.2779 21 6 2.0417 -0.7153 1.2535 22 1 -0.3633 0.5163 0.8885 23 1 -0.3633 0.5113 -0.8915 24 1 -0.3633 -1.0277 0.0029 25 1 1.8943 -0.5162 -0.8882 26 1 1.7175 1.9447 -0.9112 27 1 1.6469 1.9698 0.8679 28 1 3.9400 2.4611 0.0753 29 1 3.9677 0.9199 -0.8145 30 1 5.9536 0.0972 0.8003 31 1 5.8019 1.8336 1.1608 32 1 7.7839 -0.1773 2.3503 33 1 7.7574 1.5370 2.8285 34 1 10.9279 0.2743 4.2133 35 1 3.9378 -1.1561 2.1765 36 1 3.9666 -1.1654 0.3969 37 1 1.6455 -0.2221 2.1411 38 1 1.7146 -1.7549 1.2383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072590025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:15 Heat of formation + Delta-G solvation = -18.541226 kcal Electronic energy + Delta-G solvation = -16706.253030 eV Core-core repulsion = 14160.683815 eV Total energy + Delta-G solvation = -2545.569214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24265 -38.07003 -35.95102 -35.14821 -33.21020 -31.69654 -29.60019 -27.63087 -24.70318 -24.12204 -23.38156 -22.42264 -20.48662 -18.54425 -18.15827 -16.91744 -16.40271 -15.80211 -15.69915 -15.29082 -14.92069 -14.77193 -14.48361 -14.33250 -13.80466 -13.60338 -13.31130 -13.21469 -13.04364 -12.90677 -12.69689 -12.49483 -12.39621 -12.31666 -12.05132 -11.83665 -11.57140 -11.37489 -11.27449 -11.05746 -10.91216 -10.55438 -9.16898 -8.19501 -6.27665 1.39101 1.42162 1.52778 2.07358 2.15189 2.41690 2.97580 3.16041 3.36948 3.88933 3.94596 3.96179 4.16346 4.37136 4.41921 4.53376 4.55884 4.66137 4.73991 4.79199 4.85527 4.87265 4.91319 4.99440 5.03120 5.09736 5.20925 5.31683 5.33224 5.39104 5.46784 5.60846 5.61970 5.79444 6.12669 6.25112 6.29415 6.83404 6.94165 7.40999 8.91697 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.043170 B = 0.004956 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.449426 B = 5648.465321 C = 5680.930301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.108 4.108 4 C 0.055 3.945 5 N -0.557 5.557 6 C 0.073 3.927 7 C 0.024 3.976 8 H 0.113 0.887 9 C 0.268 3.732 10 N -0.516 5.516 11 C 0.038 3.962 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.924 5.924 16 Si 0.949 3.051 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.285 1.285 20 C 0.049 3.951 21 C -0.109 4.109 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.001 0.999 34 H 0.264 0.736 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.023 -3.769 -11.516 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.146 4.146 4 C -0.072 4.072 5 N -0.282 5.282 6 C -0.056 4.056 7 C 0.002 3.998 8 H 0.130 0.870 9 C -0.048 4.048 10 N -0.194 5.194 11 C -0.001 4.001 12 C -0.576 4.576 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.774 3.226 17 H -0.194 1.194 18 H -0.197 1.197 19 H -0.211 1.211 20 C -0.078 4.078 21 C -0.146 4.146 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.733 -2.300 -10.151 18.864 hybrid contribution 1.278 -0.661 0.259 1.462 sum -14.454 -2.961 -9.892 17.764 Atomic orbital electron populations 1.21776 0.94377 1.02058 1.01743 1.21174 0.96178 0.95601 0.98017 1.21628 0.93872 0.97083 1.01975 1.22118 0.96474 0.98503 0.90110 1.61863 1.11867 1.15497 1.38937 1.22035 0.87769 1.02549 0.93294 1.19161 0.96582 0.92610 0.91473 0.86951 1.29344 0.90130 0.93303 0.92000 1.80961 1.13228 1.13014 1.12198 1.19000 0.87824 0.96887 0.96407 1.21572 0.92067 1.46444 0.97534 0.92925 1.25702 0.96731 0.95343 1.00895 1.70036 1.00334 1.50142 1.35845 0.85641 0.78299 0.78071 0.80553 1.19433 1.19710 1.21081 1.22215 0.96398 0.87915 1.01277 1.21633 0.93944 1.00932 0.98133 0.93401 0.92012 0.92040 0.90784 0.90172 0.92857 0.91454 0.93823 0.91174 0.90789 0.94671 0.98051 0.92696 0.90954 0.93712 0.92824 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.20 71.98 0.66 -1.40 16 2 C -0.09 -1.55 2.79 -10.71 -0.03 -1.58 16 3 C -0.11 -2.06 5.38 30.65 0.16 -1.89 16 4 C 0.06 1.22 5.43 86.33 0.47 1.69 16 5 N -0.56 -14.67 4.28 -896.35 -3.83 -18.50 16 6 C 0.07 2.14 4.37 86.30 0.38 2.51 16 7 C 0.02 0.88 2.27 -12.60 -0.03 0.85 16 8 H 0.11 3.90 6.71 -2.39 -0.02 3.88 16 9 C 0.27 11.46 13.66 89.44 1.22 12.68 16 10 N -0.52 -24.02 18.54 20.00 0.37 -23.65 16 11 C 0.04 1.76 4.42 29.85 0.13 1.89 16 12 C -0.54 -28.88 8.60 25.60 0.22 -28.66 16 13 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 14 C 0.01 0.67 5.46 84.66 0.46 1.13 16 15 N -0.92 -53.28 13.29 21.45 0.28 -53.00 16 16 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 C 0.05 1.12 5.29 86.32 0.46 1.58 16 21 C -0.11 -2.13 5.38 30.65 0.16 -1.96 16 22 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.54 7.93 -2.39 -0.02 1.52 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.86 8.00 -2.39 -0.02 1.84 16 31 H 0.07 2.22 7.79 -2.39 -0.02 2.20 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 35 H 0.07 1.74 6.65 -2.39 -0.02 1.72 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -62.52 309.88 4.13 -58.39 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.01 Total: 4.14 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.27 Total: -13.16 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -3.18 Total: -95.15 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -62.52 4.13 -58.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072590025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.854 kcal (2) G-P(sol) polarization free energy of solvation -62.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds