Wall clock time and date at job start Sun Mar 29 2020 22:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86802 * 119.99679 * 2 1 4 4 H 1.48503 * 109.46660 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47291 * 299.99517 * 3 2 1 6 6 H 1.48499 * 109.47199 * 59.99927 * 3 2 1 7 7 C 1.38782 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00285 * 165.08456 * 7 2 1 9 9 N 1.36848 * 119.99746 * 345.08592 * 7 2 1 10 10 C 1.46918 * 120.52417 * 333.22462 * 9 7 2 11 11 C 1.53423 * 107.81347 * 224.74357 * 10 9 7 12 12 C 1.52864 * 108.84083 * 296.80932 * 11 10 9 13 13 C 1.50601 * 110.45868 * 51.23262 * 12 11 10 14 14 C 1.38436 * 118.93443 * 159.58388 * 13 12 11 15 15 C 1.38274 * 120.30730 * 179.79977 * 14 13 12 16 16 Cl 1.73599 * 119.91871 * 179.97438 * 15 14 13 17 17 C 1.38460 * 120.16318 * 0.21624 * 15 14 13 18 18 C 1.37961 * 119.91188 * 359.53152 * 17 15 14 19 19 C 1.38765 * 121.49560 * 339.44899 * 13 12 11 20 20 H 0.96998 * 119.99961 * 5.21794 * 1 2 3 21 21 H 1.09001 * 109.79051 * 105.16647 * 10 9 7 22 22 H 1.09006 * 109.83638 * 344.35092 * 10 9 7 23 23 H 1.09004 * 109.57128 * 177.00307 * 11 10 9 24 24 H 1.08999 * 109.68171 * 56.68399 * 11 10 9 25 25 H 1.08999 * 109.30120 * 290.93631 * 12 11 10 26 26 H 1.08993 * 109.30358 * 171.54000 * 12 11 10 27 27 H 1.08001 * 119.84666 * 359.82473 * 14 13 12 28 28 H 1.07994 * 120.04393 * 179.77651 * 17 15 14 29 29 H 1.08005 * 119.98537 * 180.27739 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7100 1.3464 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0100 -1.2019 -0.0005 8 1 3.0627 -1.2175 -0.2413 9 7 1.3603 -2.3672 0.3040 10 6 0.1711 -2.3551 1.1666 11 6 0.3136 -3.4995 2.1784 12 6 0.3323 -4.8278 1.4220 13 6 1.3509 -4.7879 0.3134 14 6 1.8266 -5.9814 -0.2022 15 6 2.7592 -5.9779 -1.2232 16 17 3.3494 -7.4804 -1.8619 17 6 3.2271 -4.7791 -1.7340 18 6 2.7545 -3.5851 -1.2295 19 6 1.8171 -3.5860 -0.2000 20 1 -0.4850 0.8365 -0.0764 21 1 -0.7241 -2.5052 0.5632 22 1 0.1058 -1.4029 1.6931 23 1 -0.5301 -3.4840 2.8684 24 1 1.2432 -3.3834 2.7355 25 1 -0.6543 -5.0149 0.9981 26 1 0.5829 -5.6325 2.1130 27 1 1.4674 -6.9194 0.1944 28 1 3.9581 -4.7786 -2.5289 29 1 3.1154 -2.6493 -1.6302 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073616143.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:54 Heat of formation + Delta-G solvation = 15.437239 kcal Electronic energy + Delta-G solvation = -14576.150916 eV Core-core repulsion = 12103.379432 eV Total energy + Delta-G solvation = -2472.771484 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.21274 -36.34678 -35.12845 -33.69644 -31.74196 -29.44367 -28.42988 -25.86750 -23.41586 -22.28507 -21.25807 -18.84178 -17.39026 -16.26210 -15.28217 -15.01863 -14.56141 -13.72918 -13.44462 -13.14467 -12.77327 -12.55117 -12.43367 -11.95771 -11.68297 -11.33669 -11.26262 -10.89118 -10.73513 -10.45483 -10.35754 -10.17016 -9.97111 -9.61620 -9.25175 -8.54876 -7.93814 -6.65919 -6.47166 -3.86978 2.28372 2.37414 3.07312 3.11272 3.12909 3.16893 3.95420 4.53167 4.83195 4.93791 5.49256 5.64822 5.75765 5.78856 5.95383 6.18099 6.26976 6.45127 6.50971 6.53044 6.72460 6.87047 6.96641 7.11770 7.17032 7.24171 7.32362 7.42499 7.68616 7.98538 8.52276 9.15181 9.52138 10.50916 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.033344 B = 0.007622 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.541093 B = 3672.762710 C = 4366.778868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.030 3.970 3 Si 0.926 3.074 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.305 4.305 8 H 0.096 0.904 9 N -0.438 5.438 10 C 0.143 3.857 11 C -0.144 4.144 12 C -0.058 4.058 13 C -0.191 4.191 14 C -0.054 4.054 15 C -0.148 4.148 16 Cl -0.121 7.121 17 C -0.061 4.061 18 C -0.198 4.198 19 C 0.216 3.784 20 H 0.271 0.729 21 H 0.053 0.947 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 -5.571 1.488 5.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.433 4.433 8 H 0.113 0.887 9 N -0.122 5.122 10 C 0.020 3.980 11 C -0.182 4.182 12 C -0.095 4.095 13 C -0.198 4.198 14 C -0.074 4.074 15 C -0.178 4.178 16 Cl -0.093 7.093 17 C -0.081 4.081 18 C -0.222 4.222 19 C 0.097 3.903 20 H 0.082 0.918 21 H 0.072 0.928 22 H 0.109 0.891 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.136 -5.184 1.645 5.556 hybrid contribution 0.376 0.698 -0.210 0.820 sum 1.513 -4.486 1.435 4.947 Atomic orbital electron populations 1.70004 1.05989 1.28129 1.46515 1.25415 0.95582 0.99968 0.96550 0.85861 0.79756 0.81119 0.78059 1.19105 1.20542 1.20462 1.19629 0.94154 0.82972 1.46591 0.88688 1.42829 1.25550 1.02622 1.41225 1.21470 0.87825 0.97699 0.91025 1.22019 1.01501 0.96239 0.98464 1.20117 0.97118 0.97268 0.94974 1.18864 1.06220 0.91251 1.03423 1.20328 0.95363 0.96762 0.94903 1.20005 1.07673 0.84792 1.05321 1.98247 1.88646 1.35356 1.87082 1.20495 0.98372 0.90676 0.98555 1.20518 1.04173 0.97194 1.00266 1.17840 0.94899 0.86043 0.91527 0.91833 0.92835 0.89122 0.91768 0.92041 0.92257 0.92234 0.87207 0.87091 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.25 11.15 55.49 0.62 -21.63 15 2 C 0.03 0.73 4.97 -17.45 -0.09 0.65 15 3 Si 0.93 19.20 29.58 -169.99 -5.03 14.18 15 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 7 C -0.31 -7.66 8.65 -15.11 -0.13 -7.79 15 8 H 0.10 2.34 6.87 -52.49 -0.36 1.98 15 9 N -0.44 -10.57 2.98 -112.54 -0.34 -10.90 15 10 C 0.14 3.18 4.96 -3.60 -0.02 3.16 15 11 C -0.14 -2.62 6.11 -26.58 -0.16 -2.78 15 12 C -0.06 -1.02 5.78 -28.00 -0.16 -1.18 15 13 C -0.19 -3.90 5.76 -104.40 -0.60 -4.50 15 14 C -0.05 -1.02 9.44 -39.50 -0.37 -1.39 15 15 C -0.15 -2.82 6.32 -39.49 -0.25 -3.07 15 16 Cl -0.12 -2.03 28.95 -51.86 -1.50 -3.53 15 17 C -0.06 -1.19 9.83 -39.60 -0.39 -1.58 15 18 C -0.20 -4.30 9.19 -39.31 -0.36 -4.66 15 19 C 0.22 4.92 6.32 -83.77 -0.53 4.39 15 20 H 0.27 6.56 8.32 -40.82 -0.34 6.22 15 21 H 0.05 1.25 8.14 -51.93 -0.42 0.82 15 22 H 0.09 2.14 6.45 -51.93 -0.33 1.80 15 23 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.06 0.92 8.12 -51.93 -0.42 0.50 15 27 H 0.11 1.85 8.06 -52.49 -0.42 1.42 15 28 H 0.11 1.93 8.06 -52.49 -0.42 1.50 15 29 H 0.12 2.72 6.58 -52.48 -0.35 2.37 15 LS Contribution 256.35 15.07 3.86 3.86 Total: -1.00 -25.55 256.35 -8.58 -34.13 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.13 Total: 2.67 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -3.06 Total: -18.77 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.28 Total: -32.54 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -1.50 Total: -3.53 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -25.55 -8.58 -34.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073616143.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.565 kcal (2) G-P(sol) polarization free energy of solvation -25.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds