Wall clock time and date at job start Sun Mar 29 2020 22:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86802 * 119.99679 * 2 1 4 4 H 1.48503 * 109.46660 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47291 * 299.99517 * 3 2 1 6 6 H 1.48499 * 109.47199 * 59.99927 * 3 2 1 7 7 C 1.38782 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00285 * 165.08456 * 7 2 1 9 9 N 1.36848 * 119.99746 * 345.08592 * 7 2 1 10 10 C 1.46918 * 120.52417 * 333.22462 * 9 7 2 11 11 C 1.53423 * 107.81347 * 224.74357 * 10 9 7 12 12 C 1.52864 * 108.84083 * 296.80932 * 11 10 9 13 13 C 1.50601 * 110.45868 * 51.23262 * 12 11 10 14 14 C 1.38436 * 118.93443 * 159.58388 * 13 12 11 15 15 C 1.38274 * 120.30730 * 179.79977 * 14 13 12 16 16 Cl 1.73599 * 119.91871 * 179.97438 * 15 14 13 17 17 C 1.38460 * 120.16318 * 0.21624 * 15 14 13 18 18 C 1.37961 * 119.91188 * 359.53152 * 17 15 14 19 19 C 1.38765 * 121.49560 * 339.44899 * 13 12 11 20 20 H 0.96998 * 119.99961 * 5.21794 * 1 2 3 21 21 H 1.09001 * 109.79051 * 105.16647 * 10 9 7 22 22 H 1.09006 * 109.83638 * 344.35092 * 10 9 7 23 23 H 1.09004 * 109.57128 * 177.00307 * 11 10 9 24 24 H 1.08999 * 109.68171 * 56.68399 * 11 10 9 25 25 H 1.08999 * 109.30120 * 290.93631 * 12 11 10 26 26 H 1.08993 * 109.30358 * 171.54000 * 12 11 10 27 27 H 1.08001 * 119.84666 * 359.82473 * 14 13 12 28 28 H 1.07994 * 120.04393 * 179.77651 * 17 15 14 29 29 H 1.08005 * 119.98537 * 180.27739 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7100 1.3464 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0100 -1.2019 -0.0005 8 1 3.0627 -1.2175 -0.2413 9 7 1.3603 -2.3672 0.3040 10 6 0.1711 -2.3551 1.1666 11 6 0.3136 -3.4995 2.1784 12 6 0.3323 -4.8278 1.4220 13 6 1.3509 -4.7879 0.3134 14 6 1.8266 -5.9814 -0.2022 15 6 2.7592 -5.9779 -1.2232 16 17 3.3494 -7.4804 -1.8619 17 6 3.2271 -4.7791 -1.7340 18 6 2.7545 -3.5851 -1.2295 19 6 1.8171 -3.5860 -0.2000 20 1 -0.4850 0.8365 -0.0764 21 1 -0.7241 -2.5052 0.5632 22 1 0.1058 -1.4029 1.6931 23 1 -0.5301 -3.4840 2.8684 24 1 1.2432 -3.3834 2.7355 25 1 -0.6543 -5.0149 0.9981 26 1 0.5829 -5.6325 2.1130 27 1 1.4674 -6.9194 0.1944 28 1 3.9581 -4.7786 -2.5289 29 1 3.1154 -2.6493 -1.6302 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073616143.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:54 Heat of formation + Delta-G solvation = 3.904581 kcal Electronic energy + Delta-G solvation = -14576.651010 eV Core-core repulsion = 12103.379432 eV Total energy + Delta-G solvation = -2473.271578 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.83646 -37.92509 -36.67362 -35.29327 -33.48803 -31.03695 -30.06585 -27.60505 -25.07396 -23.86605 -22.91222 -20.41655 -19.13143 -17.96110 -16.85554 -16.71861 -16.19419 -15.30295 -15.03752 -14.83804 -14.35393 -14.08692 -13.99455 -13.53885 -13.29539 -12.94549 -12.91639 -12.44553 -12.40867 -12.09808 -11.84332 -11.67858 -11.54659 -11.18077 -10.99620 -10.25414 -9.50707 -8.44051 -8.22595 -5.74567 0.67879 0.75647 1.41282 1.42805 1.53840 1.58835 2.24721 2.82425 3.15407 3.19576 4.00146 4.14144 4.25229 4.29519 4.44408 4.66308 4.73321 4.89977 5.02702 5.05751 5.18498 5.21732 5.32662 5.41369 5.49204 5.53712 5.67018 5.80380 6.00553 6.26204 6.72659 7.39726 7.74114 8.69852 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.033344 B = 0.007622 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.541093 B = 3672.762710 C = 4366.778868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.013 4.013 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.323 4.323 8 H 0.087 0.913 9 N -0.466 5.466 10 C 0.150 3.850 11 C -0.133 4.133 12 C -0.057 4.057 13 C -0.194 4.194 14 C -0.054 4.054 15 C -0.142 4.142 16 Cl -0.094 7.094 17 C -0.061 4.061 18 C -0.217 4.217 19 C 0.191 3.809 20 H 0.271 0.729 21 H 0.030 0.970 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.140 0.860 28 H 0.132 0.868 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 -7.555 1.820 7.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.214 4.214 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.451 4.451 8 H 0.105 0.895 9 N -0.155 5.155 10 C 0.027 3.973 11 C -0.172 4.172 12 C -0.094 4.094 13 C -0.201 4.201 14 C -0.074 4.074 15 C -0.172 4.172 16 Cl -0.065 7.065 17 C -0.081 4.081 18 C -0.242 4.242 19 C 0.076 3.924 20 H 0.080 0.920 21 H 0.049 0.951 22 H 0.085 0.915 23 H 0.113 0.887 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.158 0.842 28 H 0.150 0.850 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.645 -7.220 1.966 7.661 hybrid contribution 0.302 1.036 -0.414 1.156 sum 1.948 -6.184 1.552 6.666 Atomic orbital electron populations 1.70111 1.07123 1.28566 1.48343 1.26139 0.96284 1.02573 0.96394 0.84925 0.78643 0.77371 0.77831 1.18696 1.20536 1.20163 1.19754 0.94098 0.84121 1.47146 0.89510 1.42919 1.26585 1.02714 1.43264 1.21296 0.86609 0.98272 0.91135 1.21950 1.02421 0.95008 0.97777 1.20199 0.96838 0.97674 0.94652 1.19302 1.06239 0.90770 1.03740 1.20664 0.94809 0.97431 0.94490 1.20252 1.06605 0.85812 1.04499 1.98263 1.88272 1.33311 1.86682 1.20704 0.98450 0.90177 0.98769 1.20593 1.04950 0.97729 1.00881 1.18309 0.95258 0.86721 0.92131 0.91978 0.95134 0.91461 0.88746 0.92676 0.91184 0.89036 0.84217 0.85000 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.05 11.15 21.64 0.24 -47.81 15 2 C -0.01 -0.65 4.97 84.86 0.42 -0.23 15 3 Si 0.99 40.53 29.58 68.60 2.03 42.56 15 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 15 6 H -0.28 -11.07 7.11 99.48 0.71 -10.37 15 7 C -0.32 -16.85 8.65 84.04 0.73 -16.12 15 8 H 0.09 4.49 6.87 -2.91 -0.02 4.47 15 9 N -0.47 -23.18 2.98 -509.97 -1.52 -24.71 15 10 C 0.15 6.85 4.96 86.44 0.43 7.27 15 11 C -0.13 -4.69 6.11 30.69 0.19 -4.50 15 12 C -0.06 -1.84 5.78 29.77 0.17 -1.67 15 13 C -0.19 -7.57 5.76 -19.72 -0.11 -7.68 15 14 C -0.05 -1.89 9.44 22.33 0.21 -1.68 15 15 C -0.14 -5.00 6.32 22.33 0.14 -4.86 15 16 Cl -0.09 -2.80 28.95 -2.72 -0.08 -2.88 15 17 C -0.06 -2.31 9.83 22.26 0.22 -2.09 15 18 C -0.22 -9.53 9.19 22.45 0.21 -9.32 15 19 C 0.19 8.75 6.32 38.28 0.24 8.99 15 20 H 0.27 13.59 8.32 -92.71 -0.77 12.82 15 21 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.07 3.31 6.45 -2.38 -0.02 3.30 15 23 H 0.09 2.72 8.14 -2.38 -0.02 2.70 15 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.09 2.43 8.12 -2.39 -0.02 2.41 15 27 H 0.14 4.03 8.06 -2.91 -0.02 4.00 15 28 H 0.13 4.31 8.06 -2.91 -0.02 4.29 15 29 H 0.11 5.05 6.58 -2.91 -0.02 5.03 15 Total: -1.00 -55.54 256.35 4.66 -50.88 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.15 Total: 13.86 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 2.84 Total: -31.90 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -1.28 Total: -72.52 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.08 Total: -2.88 kcal Total: -55.54 4.66 -50.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073616143.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.782 kcal (2) G-P(sol) polarization free energy of solvation -55.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds