Wall clock time and date at job start Sun Mar 29 2020 21:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.76622 * 2 1 4 4 C 1.54316 * 110.71163 * 236.79176 * 2 1 3 5 5 N 1.47436 * 107.23899 * 219.33610 * 4 2 1 6 6 C 1.46893 * 111.00232 * 236.74392 * 5 4 2 7 7 C 1.53002 * 109.46863 * 294.09688 * 6 5 4 8 8 H 1.09003 * 109.47167 * 54.74672 * 7 6 5 9 9 C 1.47193 * 109.47312 * 294.74117 * 7 6 5 10 10 N 5.84637 * 116.07013 * 214.91382 * 2 1 3 11 11 C 1.53001 * 109.46961 * 174.73889 * 7 6 5 12 12 C 1.50703 * 109.47107 * 184.99940 * 11 7 6 13 13 H 1.07998 * 119.99830 * 0.02562 * 12 11 7 14 14 C 1.37876 * 119.99854 * 180.02562 * 12 11 7 15 15 N 1.31513 * 120.00033 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99733 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47066 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47483 * 299.99905 * 16 14 12 19 19 H 1.48503 * 109.47439 * 60.00227 * 16 14 12 20 20 C 1.47850 * 108.56604 * 359.01130 * 5 4 2 21 21 C 1.54907 * 104.79665 * 24.09145 * 20 5 4 22 22 H 1.09004 * 110.98799 * 81.02287 * 21 20 5 23 23 C 1.53000 * 110.99596 * 204.84003 * 21 20 5 24 24 H 1.09003 * 109.47416 * 181.74986 * 1 2 3 25 25 H 1.09002 * 109.47582 * 301.75593 * 1 2 3 26 26 H 1.09005 * 109.47004 * 61.75410 * 1 2 3 27 27 H 1.09000 * 109.88713 * 99.92346 * 4 2 1 28 28 H 1.09001 * 110.01790 * 338.82246 * 4 2 1 29 29 H 1.09003 * 109.47338 * 174.10179 * 6 5 4 30 30 H 1.09000 * 109.47358 * 54.09979 * 6 5 4 31 31 H 1.09006 * 109.46800 * 65.00814 * 11 7 6 32 32 H 1.08992 * 109.48047 * 305.00628 * 11 7 6 33 33 H 0.97003 * 119.99453 * 180.02562 * 15 14 12 34 34 H 1.08994 * 110.37647 * 142.92381 * 20 5 4 35 35 H 1.08999 * 110.37154 * 265.26864 * 20 5 4 36 36 H 1.08997 * 109.47569 * 172.27134 * 23 21 20 37 37 H 1.09001 * 109.47081 * 292.27645 * 23 21 20 38 38 H 1.08998 * 109.46898 * 52.26635 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0757 -0.7905 -1.2077 5 7 3.2490 -1.5502 -0.7385 6 6 4.4406 -1.2217 -1.5322 7 6 4.2434 -1.7026 -2.9712 8 1 3.3208 -1.2823 -3.3715 9 6 4.1621 -3.1722 -2.9907 10 7 4.0993 -4.3063 -3.0057 11 6 5.4257 -1.2458 -3.8281 12 6 5.1737 -1.6122 -5.2680 13 1 4.2613 -2.1196 -5.5444 14 6 6.1080 -1.2994 -6.2326 15 7 7.2193 -0.6819 -5.8959 16 14 5.7953 -1.7529 -8.0175 17 1 6.9435 -1.3107 -8.8490 18 1 5.6383 -3.2250 -8.1341 19 1 4.5559 -1.0840 -8.4884 20 6 3.4650 -1.2466 0.6922 21 6 2.0785 -0.7945 1.2145 22 1 1.4458 -1.6538 1.4368 23 6 2.2225 0.1091 2.4407 24 1 -0.3634 -1.0272 0.0314 25 1 -0.3634 0.5409 0.8738 26 1 -0.3633 0.4864 -0.9053 27 1 2.3721 -0.1015 -1.9986 28 1 1.3144 -1.4762 -1.5797 29 1 5.3118 -1.7146 -1.1006 30 1 4.5942 -0.1426 -1.5275 31 1 6.3358 -1.7362 -3.4824 32 1 5.5404 -0.1653 -3.7428 33 1 7.8764 -0.4616 -6.5747 34 1 3.7983 -2.1381 1.2233 35 1 4.1929 -0.4430 0.8038 36 1 1.2488 0.5222 2.7041 37 1 2.6088 -0.4728 3.2775 38 1 2.9127 0.9217 2.2141 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076111676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:36 Heat of formation + Delta-G solvation = 3.573548 kcal Electronic energy + Delta-G solvation = -16687.394580 eV Core-core repulsion = 14142.784334 eV Total energy + Delta-G solvation = -2544.610246 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.49080 -36.49793 -34.23961 -33.16918 -31.39190 -31.14725 -27.28894 -26.31883 -24.92159 -22.61883 -21.72965 -20.67600 -19.91180 -16.71355 -16.50562 -15.66967 -15.28086 -14.50999 -14.29233 -14.06030 -13.65583 -13.22824 -12.95754 -12.83068 -12.49283 -12.34609 -12.24236 -11.89685 -11.79317 -11.56915 -11.26927 -11.07908 -10.93248 -10.78162 -10.73904 -10.60148 -10.49418 -10.37904 -10.12801 -9.50379 -9.21421 -8.44027 -8.11973 -6.08276 -4.11387 3.32120 3.36282 3.40221 3.77803 3.87758 4.11485 4.42271 4.48075 4.59948 4.74845 4.96774 5.22928 5.28584 5.29817 5.35071 5.39418 5.54016 5.56255 5.60002 5.70091 5.71197 5.81586 5.88906 5.92043 6.03260 6.05657 6.12911 6.17914 6.35479 6.44176 6.51797 7.13760 7.25503 7.43753 7.54655 7.86915 8.24862 8.62920 8.93134 9.53954 11.02642 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.005121 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.966943 B = 5466.364626 C = 5515.683557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.041 3.959 5 N -0.533 5.533 6 C 0.058 3.942 7 C 0.010 3.990 8 H 0.099 0.901 9 C 0.257 3.743 10 N -0.481 5.481 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.286 1.286 18 H -0.277 1.277 19 H -0.275 1.275 20 C 0.047 3.953 21 C -0.098 4.098 22 H 0.082 0.918 23 C -0.140 4.140 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 5.317 14.118 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 H 0.093 0.907 4 C -0.086 4.086 5 N -0.257 5.257 6 C -0.071 4.071 7 C -0.011 4.011 8 H 0.117 0.883 9 C -0.060 4.060 10 N -0.158 5.158 11 C -0.007 4.007 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.212 1.212 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.081 4.081 21 C -0.117 4.117 22 H 0.100 0.900 23 C -0.198 4.198 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.046 3.137 13.944 17.470 hybrid contribution 0.175 1.070 -1.028 1.495 sum -9.871 4.207 12.916 16.792 Atomic orbital electron populations 1.21719 0.94511 1.01924 1.01513 1.22439 0.96221 0.99221 0.95083 0.90652 1.22980 0.93424 0.95689 0.96553 1.63613 1.04310 1.55501 1.02254 1.22401 0.92690 0.99251 0.92776 1.19251 1.04211 0.82361 0.95323 0.88339 1.28842 0.91430 0.94870 0.90809 1.80970 1.10591 1.13388 1.10836 1.19170 0.90719 0.97432 0.93392 1.21107 1.04690 1.38591 0.92048 0.92567 1.24946 0.94972 0.94887 0.99108 1.69931 1.08598 1.40589 1.33974 0.86655 0.77762 0.79066 0.84602 1.21187 1.20203 1.20060 1.23074 0.96292 0.99821 0.88901 1.22362 0.96671 0.98240 0.94474 0.89990 1.21713 1.01607 0.99296 0.97200 0.92447 0.92856 0.92501 0.91843 0.90586 0.90352 0.92854 0.95578 0.94533 0.92759 0.90590 0.93401 0.92597 0.92609 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.13 37.16 0.34 -0.88 16 2 C -0.11 -1.12 3.01 -88.80 -0.27 -1.39 16 3 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 4 C 0.04 0.52 5.69 -2.84 -0.02 0.50 16 5 N -0.53 -7.57 4.89 -231.26 -1.13 -8.70 16 6 C 0.06 0.90 3.89 -3.83 -0.01 0.89 16 7 C 0.01 0.20 2.13 -93.41 -0.20 0.00 16 8 H 0.10 1.78 6.76 -51.93 -0.35 1.43 16 9 C 0.26 5.57 13.67 -20.76 -0.28 5.29 16 10 N -0.48 -11.27 18.54 42.15 0.78 -10.49 16 11 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 12 C -0.53 -14.18 8.60 -34.44 -0.30 -14.48 16 13 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.05 0.55 6.18 -2.30 -0.01 0.54 16 21 C -0.10 -0.98 3.08 -88.48 -0.27 -1.25 16 22 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 23 C -0.14 -1.14 9.31 37.16 0.35 -0.79 16 24 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.81 6.75 -51.93 -0.35 0.46 16 28 H 0.08 0.99 7.83 -51.93 -0.41 0.59 16 29 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 30 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.45 8.07 -51.93 -0.42 0.03 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -29.89 312.49 -7.34 -37.23 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -6.51 Total: -4.91 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.90 Total: -9.30 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.39 Total: -44.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.89 -7.34 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076111676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.808 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds