Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.76622 * 2 1 4 4 C 1.54316 * 110.71163 * 236.79176 * 2 1 3 5 5 N 1.47436 * 107.23899 * 219.33610 * 4 2 1 6 6 C 1.46893 * 111.00232 * 236.74392 * 5 4 2 7 7 C 1.53002 * 109.46863 * 294.09688 * 6 5 4 8 8 H 1.09003 * 109.47167 * 54.74672 * 7 6 5 9 9 C 1.47193 * 109.47312 * 294.74117 * 7 6 5 10 10 N 5.84637 * 116.07013 * 214.91382 * 2 1 3 11 11 C 1.53001 * 109.46961 * 174.73889 * 7 6 5 12 12 C 1.50703 * 109.47107 * 184.99940 * 11 7 6 13 13 H 1.07998 * 119.99830 * 0.02562 * 12 11 7 14 14 C 1.37876 * 119.99854 * 180.02562 * 12 11 7 15 15 N 1.31513 * 120.00033 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99733 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47066 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47483 * 299.99905 * 16 14 12 19 19 H 1.48503 * 109.47439 * 60.00227 * 16 14 12 20 20 C 1.47850 * 108.56604 * 359.01130 * 5 4 2 21 21 C 1.54907 * 104.79665 * 24.09145 * 20 5 4 22 22 H 1.09004 * 110.98799 * 81.02287 * 21 20 5 23 23 C 1.53000 * 110.99596 * 204.84003 * 21 20 5 24 24 H 1.09003 * 109.47416 * 181.74986 * 1 2 3 25 25 H 1.09002 * 109.47582 * 301.75593 * 1 2 3 26 26 H 1.09005 * 109.47004 * 61.75410 * 1 2 3 27 27 H 1.09000 * 109.88713 * 99.92346 * 4 2 1 28 28 H 1.09001 * 110.01790 * 338.82246 * 4 2 1 29 29 H 1.09003 * 109.47338 * 174.10179 * 6 5 4 30 30 H 1.09000 * 109.47358 * 54.09979 * 6 5 4 31 31 H 1.09006 * 109.46800 * 65.00814 * 11 7 6 32 32 H 1.08992 * 109.48047 * 305.00628 * 11 7 6 33 33 H 0.97003 * 119.99453 * 180.02562 * 15 14 12 34 34 H 1.08994 * 110.37647 * 142.92381 * 20 5 4 35 35 H 1.08999 * 110.37154 * 265.26864 * 20 5 4 36 36 H 1.08997 * 109.47569 * 172.27134 * 23 21 20 37 37 H 1.09001 * 109.47081 * 292.27645 * 23 21 20 38 38 H 1.08998 * 109.46898 * 52.26635 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0757 -0.7905 -1.2077 5 7 3.2490 -1.5502 -0.7385 6 6 4.4406 -1.2217 -1.5322 7 6 4.2434 -1.7026 -2.9712 8 1 3.3208 -1.2823 -3.3715 9 6 4.1621 -3.1722 -2.9907 10 7 4.0993 -4.3063 -3.0057 11 6 5.4257 -1.2458 -3.8281 12 6 5.1737 -1.6122 -5.2680 13 1 4.2613 -2.1196 -5.5444 14 6 6.1080 -1.2994 -6.2326 15 7 7.2193 -0.6819 -5.8959 16 14 5.7953 -1.7529 -8.0175 17 1 6.9435 -1.3107 -8.8490 18 1 5.6383 -3.2250 -8.1341 19 1 4.5559 -1.0840 -8.4884 20 6 3.4650 -1.2466 0.6922 21 6 2.0785 -0.7945 1.2145 22 1 1.4458 -1.6538 1.4368 23 6 2.2225 0.1091 2.4407 24 1 -0.3634 -1.0272 0.0314 25 1 -0.3634 0.5409 0.8738 26 1 -0.3633 0.4864 -0.9053 27 1 2.3721 -0.1015 -1.9986 28 1 1.3144 -1.4762 -1.5797 29 1 5.3118 -1.7146 -1.1006 30 1 4.5942 -0.1426 -1.5275 31 1 6.3358 -1.7362 -3.4824 32 1 5.5404 -0.1653 -3.7428 33 1 7.8764 -0.4616 -6.5747 34 1 3.7983 -2.1381 1.2233 35 1 4.1929 -0.4430 0.8038 36 1 1.2488 0.5222 2.7041 37 1 2.6088 -0.4728 3.2775 38 1 2.9127 0.9217 2.2141 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076111676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = -13.728465 kcal Electronic energy + Delta-G solvation = -16688.144852 eV Core-core repulsion = 14142.784334 eV Total energy + Delta-G solvation = -2545.360517 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50094 -38.08418 -35.81871 -34.86485 -32.86270 -32.05362 -28.86631 -27.18207 -26.28077 -23.92053 -23.44229 -21.64391 -20.79361 -18.50719 -18.19779 -16.93532 -16.50124 -16.19203 -15.60885 -14.93681 -14.77648 -14.50853 -14.21046 -14.08507 -14.04710 -13.72305 -13.30003 -13.20431 -13.03638 -12.94502 -12.76723 -12.54825 -12.42181 -12.37000 -12.03113 -11.84157 -11.58437 -11.53355 -11.36063 -11.14896 -11.06018 -10.55520 -9.19009 -8.19962 -6.28603 1.40766 1.42767 1.49829 2.03834 2.11404 2.41295 3.03949 3.15451 3.33194 3.65215 3.74690 3.96196 4.17657 4.32621 4.40524 4.55407 4.59709 4.66619 4.68682 4.72367 4.80690 4.85415 4.90375 4.95546 5.06017 5.13654 5.21221 5.23675 5.32342 5.44435 5.45851 5.58138 5.60450 5.77726 6.09819 6.12214 6.22934 6.81279 6.90831 7.40004 8.90841 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.005121 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.966943 B = 5466.364626 C = 5515.683557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 H 0.081 0.919 4 C 0.037 3.963 5 N -0.550 5.550 6 C 0.069 3.931 7 C 0.022 3.978 8 H 0.113 0.887 9 C 0.267 3.733 10 N -0.514 5.514 11 C 0.039 3.961 12 C -0.541 4.541 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.949 3.051 17 H -0.281 1.281 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.044 3.956 21 C -0.092 4.092 22 H 0.077 0.923 23 C -0.136 4.136 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.001 0.999 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.195 6.220 14.734 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 H 0.100 0.900 4 C -0.091 4.091 5 N -0.274 5.274 6 C -0.060 4.060 7 C 0.000 4.000 8 H 0.131 0.869 9 C -0.049 4.049 10 N -0.192 5.192 11 C 0.000 4.000 12 C -0.579 4.579 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.774 3.226 17 H -0.206 1.206 18 H -0.207 1.207 19 H -0.187 1.187 20 C -0.083 4.083 21 C -0.111 4.111 22 H 0.096 0.904 23 C -0.193 4.193 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.212 4.045 14.571 18.825 hybrid contribution 0.533 0.771 -1.201 1.523 sum -10.680 4.816 13.370 17.777 Atomic orbital electron populations 1.21694 0.93403 1.01919 1.02332 1.22410 0.97082 0.99019 0.93836 0.90044 1.23027 0.92732 0.95640 0.97677 1.63541 1.04008 1.56439 1.03418 1.22211 0.93372 0.99847 0.90614 1.19201 1.02860 0.80786 0.97152 0.86926 1.29334 0.90468 0.95383 0.89760 1.80964 1.11653 1.14456 1.12080 1.18989 0.91389 0.96982 0.92649 1.21506 1.04461 1.38103 0.93853 0.92898 1.25706 0.94891 0.94986 1.03025 1.70026 1.09377 1.41691 1.35185 0.85746 0.78243 0.78355 0.80222 1.20585 1.20715 1.18692 1.23143 0.97767 1.00034 0.87370 1.22329 0.95231 0.98428 0.95143 0.90411 1.21679 1.02348 0.98964 0.96335 0.92913 0.91421 0.92279 0.92080 0.91377 0.90802 0.91338 0.98052 0.94690 0.92656 0.90952 0.92645 0.91509 0.92055 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.13 71.98 0.66 -1.43 16 2 C -0.10 -1.89 3.01 -9.61 -0.03 -1.91 16 3 H 0.08 1.40 8.04 -2.39 -0.02 1.38 16 4 C 0.04 0.87 5.69 86.65 0.49 1.37 16 5 N -0.55 -14.96 4.89 -885.57 -4.33 -19.30 16 6 C 0.07 2.08 3.89 86.31 0.34 2.41 16 7 C 0.02 0.82 2.13 -12.60 -0.03 0.79 16 8 H 0.11 3.95 6.76 -2.39 -0.02 3.94 16 9 C 0.27 11.52 13.67 89.44 1.22 12.74 16 10 N -0.51 -24.12 18.54 20.00 0.37 -23.75 16 11 C 0.04 1.83 4.42 29.85 0.13 1.96 16 12 C -0.54 -29.13 8.60 25.60 0.22 -28.91 16 13 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 14 C 0.01 0.72 5.46 84.65 0.46 1.18 16 15 N -0.92 -53.34 13.29 21.45 0.28 -53.05 16 16 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 C 0.04 0.97 6.18 86.77 0.54 1.50 16 21 C -0.09 -1.64 3.08 -9.41 -0.03 -1.66 16 22 H 0.08 1.46 8.04 -2.38 -0.02 1.44 16 23 C -0.14 -1.83 9.31 71.98 0.67 -1.16 16 24 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.06 1.47 6.75 -2.39 -0.02 1.45 16 28 H 0.07 1.71 7.83 -2.39 -0.02 1.69 16 29 H 0.07 2.29 8.11 -2.39 -0.02 2.27 16 30 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 31 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 32 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.14 7.65 -2.39 -0.02 1.12 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.76 8.07 -2.39 -0.02 0.75 16 Total: -1.00 -62.74 312.49 4.00 -58.74 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.01 Total: 4.75 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.64 Total: -13.12 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -3.68 Total: -96.10 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -62.74 4.00 -58.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076111676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.013 kcal (2) G-P(sol) polarization free energy of solvation -62.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds