Wall clock time and date at job start Sun Mar 29 2020 21:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46836 * 163.93432 * 3 2 1 5 5 C 1.53000 * 109.47454 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47536 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47319 * 179.97438 * 6 5 4 8 8 C 1.36934 * 120.00185 * 270.00429 * 7 6 5 9 9 H 1.08010 * 119.99752 * 141.59457 * 8 7 6 10 10 C 1.38806 * 120.00099 * 321.59637 * 8 7 6 11 11 N 1.31619 * 120.00191 * 339.26715 * 10 8 7 12 12 Si 1.86804 * 119.99928 * 159.26509 * 10 8 7 13 13 H 1.48496 * 109.47253 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46880 * 120.00098 * 12 10 8 15 15 H 1.48504 * 109.46924 * 239.99813 * 12 10 8 16 16 C 1.46503 * 119.99486 * 89.99804 * 7 6 5 17 17 C 1.54267 * 110.03404 * 242.54933 * 16 7 6 18 18 C 1.54964 * 104.16155 * 217.14345 * 17 16 7 19 19 C 1.54891 * 102.78000 * 37.88701 * 18 17 16 20 20 C 1.53885 * 110.02857 * 125.33706 * 16 7 6 21 21 H 1.09000 * 109.47237 * 43.93461 * 3 2 1 22 22 H 1.09004 * 109.47215 * 283.93325 * 3 2 1 23 23 H 1.09002 * 109.47691 * 59.99946 * 4 3 2 24 24 H 1.09004 * 109.47131 * 299.99945 * 4 3 2 25 25 H 1.09002 * 109.46603 * 59.99418 * 5 4 3 26 26 H 1.09004 * 109.47019 * 300.00151 * 5 4 3 27 27 H 1.09000 * 109.46828 * 60.00301 * 6 5 4 28 28 H 1.08998 * 109.47552 * 299.99890 * 6 5 4 29 29 H 0.96997 * 120.00528 * 175.03239 * 11 10 8 30 30 H 1.08997 * 110.02248 * 3.94701 * 16 7 6 31 31 H 1.08998 * 110.48761 * 335.78596 * 17 16 7 32 32 H 1.09000 * 110.48226 * 98.42973 * 17 16 7 33 33 H 1.09006 * 110.71654 * 279.57657 * 18 17 16 34 34 H 1.09000 * 110.92813 * 156.30019 * 18 17 16 35 35 H 1.09000 * 110.48504 * 203.40685 * 19 18 17 36 36 H 1.08996 * 110.59748 * 80.81662 * 19 18 17 37 37 H 1.08996 * 110.02864 * 238.57449 * 20 16 7 38 38 H 1.09001 * 110.02882 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3870 -0.3992 5 6 4.6473 1.3881 -0.3986 6 6 5.1566 2.7742 -0.7984 7 7 6.6217 2.7753 -0.7973 8 6 7.3052 3.1048 0.3426 9 1 8.2102 2.5752 0.6017 10 6 6.8351 4.1192 1.1651 11 7 6.0062 5.0231 0.6872 12 14 7.3786 4.2016 2.9504 13 1 8.3059 3.0780 3.2379 14 1 8.0726 5.4911 3.1975 15 1 6.1899 4.1018 3.8349 16 6 7.3553 2.4238 -2.0157 17 6 8.1989 1.1545 -1.7770 18 6 9.5024 1.4100 -2.5749 19 6 9.7523 2.9217 -2.3481 20 6 8.3424 3.5470 -2.3791 21 1 2.9717 -0.7392 -0.7130 22 1 2.9715 -0.2466 0.9975 23 1 2.7537 2.1270 0.3138 24 1 2.7538 1.6343 -1.3966 25 1 5.0113 0.6480 -1.1114 26 1 5.0104 1.1409 0.5990 27 1 4.7926 3.5145 -0.0859 28 1 4.7936 3.0210 -1.7961 29 1 5.6213 5.6889 1.2782 30 1 6.6578 2.2596 -2.8370 31 1 8.4184 1.0363 -0.7159 32 1 7.6818 0.2751 -2.1608 33 1 9.3543 1.1976 -3.6338 34 1 10.3259 0.8181 -2.1754 35 1 10.3688 3.3308 -3.1486 36 1 10.2237 3.0914 -1.3801 37 1 8.1243 3.9272 -3.3770 38 1 8.2752 4.3537 -1.6491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:48 Heat of formation + Delta-G solvation = 16.145854 kcal Electronic energy + Delta-G solvation = -16900.665274 eV Core-core repulsion = 14356.600204 eV Total energy + Delta-G solvation = -2544.065070 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.79800 -36.89903 -35.12197 -33.46748 -31.05486 -28.91738 -27.80369 -26.42782 -24.55950 -22.06609 -20.39948 -19.86852 -19.00287 -17.27076 -16.17893 -15.54999 -15.22416 -14.73278 -14.23814 -13.88720 -13.47731 -13.11820 -13.00001 -12.77768 -12.52659 -11.99324 -11.72836 -11.49350 -11.18962 -10.99540 -10.81928 -10.71097 -10.43533 -10.38675 -10.33667 -10.21843 -10.14069 -10.05166 -9.61731 -9.51656 -9.41250 -8.42393 -6.52840 -5.71758 -3.36060 2.85692 2.87666 3.35365 3.45742 3.46989 4.13331 4.50244 5.18873 5.21238 5.32579 5.38503 5.45769 5.53579 5.57034 5.73791 5.90499 6.13259 6.18480 6.26735 6.27291 6.31132 6.44369 6.47911 6.56393 6.60983 6.65558 6.77013 6.82393 6.89970 7.05324 7.16095 7.25680 7.43391 7.65503 7.73576 7.87005 8.56754 9.24423 9.86783 10.45436 11.23248 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.007788 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.496750 B = 3594.301402 C = 4764.608118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.214 3.786 3 C -0.028 4.028 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.146 3.854 7 N -0.579 5.579 8 C -0.244 4.244 9 H 0.060 0.940 10 C 0.011 3.989 11 N -0.885 5.885 12 Si 0.887 3.113 13 H -0.277 1.277 14 H -0.291 1.291 15 H -0.289 1.289 16 C 0.170 3.830 17 C -0.134 4.134 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.132 4.132 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.021 0.979 29 H 0.251 0.749 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.039 0.961 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -7.433 -4.085 8.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.103 4.103 3 C -0.069 4.069 4 C -0.152 4.152 5 C -0.173 4.173 6 C 0.019 3.981 7 N -0.298 5.298 8 C -0.374 4.374 9 H 0.077 0.923 10 C -0.189 4.189 11 N -0.528 5.528 12 Si 0.717 3.283 13 H -0.202 1.202 14 H -0.218 1.218 15 H -0.216 1.216 16 C 0.063 3.937 17 C -0.174 4.174 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.171 4.171 21 H 0.123 0.877 22 H 0.125 0.875 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.133 -7.229 -4.025 8.275 hybrid contribution 0.649 0.087 0.984 1.182 sum 0.516 -7.142 -3.041 7.780 Atomic orbital electron populations 1.81177 1.13369 1.09347 1.09590 1.29556 0.95625 0.92566 0.92563 1.19488 0.80686 1.01514 1.05175 1.21549 0.98253 0.93532 1.01864 1.22217 0.91262 1.01884 1.01958 1.20904 0.84027 0.93976 0.99147 1.43944 1.00444 1.78507 1.06887 1.18927 1.08894 1.10993 0.98550 0.92258 1.25133 1.00278 0.94222 0.99217 1.70076 1.34043 1.15254 1.33420 0.86488 0.78152 0.77470 0.86234 1.20164 1.21845 1.21580 1.21045 0.92204 0.91525 0.88937 1.22856 0.95356 0.98584 1.00589 1.22444 0.97926 0.96595 0.99166 1.22253 0.97833 0.95110 1.00358 1.22553 0.93917 1.00584 1.00039 0.87691 0.87497 0.91319 0.91846 0.93455 0.91846 0.89035 0.96067 0.93852 0.93575 0.90865 0.93586 0.92778 0.93022 0.93545 0.92042 0.94249 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.23 18.54 42.15 0.78 -6.45 16 2 C 0.21 2.78 15.43 -20.76 -0.32 2.46 16 3 C -0.03 -0.29 5.70 -29.52 -0.17 -0.46 16 4 C -0.11 -1.49 5.17 -26.73 -0.14 -1.63 16 5 C -0.13 -2.17 5.54 -26.73 -0.15 -2.32 16 6 C 0.15 3.04 5.28 -4.04 -0.02 3.02 16 7 N -0.58 -12.97 2.38 -164.39 -0.39 -13.36 16 8 C -0.24 -6.06 7.75 -15.06 -0.12 -6.18 16 9 H 0.06 1.51 6.94 -52.48 -0.36 1.15 16 10 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 11 N -0.89 -24.09 11.48 55.49 0.64 -23.46 16 12 Si 0.89 20.59 29.61 -169.99 -5.03 15.56 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.17 3.34 3.42 -66.81 -0.23 3.11 16 17 C -0.13 -2.33 6.43 -25.03 -0.16 -2.49 16 18 C -0.12 -1.89 6.91 -24.70 -0.17 -2.06 16 19 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 20 C -0.13 -2.57 6.25 -25.61 -0.16 -2.73 16 21 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.09 2.21 5.55 -51.93 -0.29 1.93 16 28 H 0.02 0.43 7.91 -51.93 -0.41 0.02 16 29 H 0.25 6.69 8.32 -40.82 -0.34 6.35 16 30 H 0.05 0.87 7.81 -51.93 -0.41 0.46 16 31 H 0.07 1.42 6.64 -51.93 -0.34 1.07 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 2.00 7.17 -51.93 -0.37 1.62 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -27.75 311.03 -7.60 -35.35 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.39 Total: -1.13 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.89 Total: -11.20 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 1.03 Total: -43.27 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.75 -7.60 -35.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.497 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds