Wall clock time and date at job start Sun Mar 29 2020 21:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46836 * 163.93432 * 3 2 1 5 5 C 1.53000 * 109.47454 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47536 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47319 * 179.97438 * 6 5 4 8 8 C 1.36934 * 120.00185 * 270.00429 * 7 6 5 9 9 H 1.08010 * 119.99752 * 141.59457 * 8 7 6 10 10 C 1.38806 * 120.00099 * 321.59637 * 8 7 6 11 11 N 1.31619 * 120.00191 * 339.26715 * 10 8 7 12 12 Si 1.86804 * 119.99928 * 159.26509 * 10 8 7 13 13 H 1.48496 * 109.47253 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46880 * 120.00098 * 12 10 8 15 15 H 1.48504 * 109.46924 * 239.99813 * 12 10 8 16 16 C 1.46503 * 119.99486 * 89.99804 * 7 6 5 17 17 C 1.54267 * 110.03404 * 242.54933 * 16 7 6 18 18 C 1.54964 * 104.16155 * 217.14345 * 17 16 7 19 19 C 1.54891 * 102.78000 * 37.88701 * 18 17 16 20 20 C 1.53885 * 110.02857 * 125.33706 * 16 7 6 21 21 H 1.09000 * 109.47237 * 43.93461 * 3 2 1 22 22 H 1.09004 * 109.47215 * 283.93325 * 3 2 1 23 23 H 1.09002 * 109.47691 * 59.99946 * 4 3 2 24 24 H 1.09004 * 109.47131 * 299.99945 * 4 3 2 25 25 H 1.09002 * 109.46603 * 59.99418 * 5 4 3 26 26 H 1.09004 * 109.47019 * 300.00151 * 5 4 3 27 27 H 1.09000 * 109.46828 * 60.00301 * 6 5 4 28 28 H 1.08998 * 109.47552 * 299.99890 * 6 5 4 29 29 H 0.96997 * 120.00528 * 175.03239 * 11 10 8 30 30 H 1.08997 * 110.02248 * 3.94701 * 16 7 6 31 31 H 1.08998 * 110.48761 * 335.78596 * 17 16 7 32 32 H 1.09000 * 110.48226 * 98.42973 * 17 16 7 33 33 H 1.09006 * 110.71654 * 279.57657 * 18 17 16 34 34 H 1.09000 * 110.92813 * 156.30019 * 18 17 16 35 35 H 1.09000 * 110.48504 * 203.40685 * 19 18 17 36 36 H 1.08996 * 110.59748 * 80.81662 * 19 18 17 37 37 H 1.08996 * 110.02864 * 238.57449 * 20 16 7 38 38 H 1.09001 * 110.02882 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3870 -0.3992 5 6 4.6473 1.3881 -0.3986 6 6 5.1566 2.7742 -0.7984 7 7 6.6217 2.7753 -0.7973 8 6 7.3052 3.1048 0.3426 9 1 8.2102 2.5752 0.6017 10 6 6.8351 4.1192 1.1651 11 7 6.0062 5.0231 0.6872 12 14 7.3786 4.2016 2.9504 13 1 8.3059 3.0780 3.2379 14 1 8.0726 5.4911 3.1975 15 1 6.1899 4.1018 3.8349 16 6 7.3553 2.4238 -2.0157 17 6 8.1989 1.1545 -1.7770 18 6 9.5024 1.4100 -2.5749 19 6 9.7523 2.9217 -2.3481 20 6 8.3424 3.5470 -2.3791 21 1 2.9717 -0.7392 -0.7130 22 1 2.9715 -0.2466 0.9975 23 1 2.7537 2.1270 0.3138 24 1 2.7538 1.6343 -1.3966 25 1 5.0113 0.6480 -1.1114 26 1 5.0104 1.1409 0.5990 27 1 4.7926 3.5145 -0.0859 28 1 4.7936 3.0210 -1.7961 29 1 5.6213 5.6889 1.2782 30 1 6.6578 2.2596 -2.8370 31 1 8.4184 1.0363 -0.7159 32 1 7.6818 0.2751 -2.1608 33 1 9.3543 1.1976 -3.6338 34 1 10.3259 0.8181 -2.1754 35 1 10.3688 3.3308 -3.1486 36 1 10.2237 3.0914 -1.3801 37 1 8.1243 3.9272 -3.3770 38 1 8.2752 4.3537 -1.6491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:48 Heat of formation + Delta-G solvation = 2.839655 kcal Electronic energy + Delta-G solvation = -16901.242274 eV Core-core repulsion = 14356.600204 eV Total energy + Delta-G solvation = -2544.642070 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.32574 -38.00525 -36.53722 -34.92046 -32.82647 -30.23851 -29.23404 -28.05386 -26.14258 -23.55883 -21.79856 -21.19278 -20.65058 -18.40713 -17.84729 -17.01115 -16.49499 -16.34723 -15.86895 -15.18060 -14.80815 -14.50317 -14.43924 -14.09313 -13.95152 -13.37692 -13.14085 -12.95959 -12.75953 -12.63347 -12.33056 -12.15783 -11.98571 -11.72346 -11.68414 -11.67793 -11.60727 -11.48180 -11.17693 -11.05476 -11.01021 -10.35868 -8.40122 -7.63322 -5.31685 1.47376 1.53279 1.60379 1.81736 1.86539 2.59710 3.15229 3.37023 3.76150 4.07639 4.11839 4.24954 4.27890 4.38827 4.65287 4.74290 4.79117 4.86193 4.97467 4.99429 5.03303 5.06731 5.08856 5.12931 5.29855 5.32105 5.36581 5.41602 5.49790 5.64645 5.71170 5.73174 5.81749 5.87634 6.06391 6.62443 6.65456 7.34094 8.06201 8.56771 9.25748 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.007788 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.496750 B = 3594.301402 C = 4764.608118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.239 3.761 3 C -0.017 4.017 4 C -0.105 4.105 5 C -0.115 4.115 6 C 0.142 3.858 7 N -0.592 5.592 8 C -0.229 4.229 9 H 0.053 0.947 10 C -0.037 4.037 11 N -0.917 5.917 12 Si 0.938 3.062 13 H -0.268 1.268 14 H -0.302 1.302 15 H -0.292 1.292 16 C 0.161 3.839 17 C -0.126 4.126 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.131 4.131 21 H 0.139 0.861 22 H 0.127 0.873 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.020 0.980 29 H 0.244 0.756 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -9.782 -5.079 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.077 4.077 3 C -0.057 4.057 4 C -0.145 4.145 5 C -0.155 4.155 6 C 0.016 3.984 7 N -0.312 5.312 8 C -0.360 4.360 9 H 0.070 0.930 10 C -0.234 4.234 11 N -0.563 5.563 12 Si 0.768 3.232 13 H -0.192 1.192 14 H -0.229 1.229 15 H -0.219 1.219 16 C 0.054 3.946 17 C -0.166 4.166 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.171 4.171 21 H 0.157 0.843 22 H 0.145 0.855 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.828 -9.607 -5.027 10.875 hybrid contribution 0.404 0.851 1.204 1.528 sum 1.232 -8.757 -3.823 9.634 Atomic orbital electron populations 1.81208 1.15106 1.11012 1.11572 1.29956 0.95908 0.90989 0.90880 1.19566 0.78663 1.00148 1.07284 1.21391 0.96063 0.95184 1.01857 1.21913 0.93092 0.99016 1.01483 1.20888 0.83439 0.95922 0.98132 1.44163 1.01147 1.78629 1.07292 1.19007 1.08170 1.09650 0.99148 0.92962 1.25667 1.01220 0.94482 1.02018 1.70200 1.35864 1.16222 1.33984 0.85672 0.77578 0.76972 0.83016 1.19223 1.22934 1.21852 1.21285 0.92548 0.92615 0.88124 1.22725 0.96229 0.97931 0.99684 1.22414 0.97216 0.95112 1.00302 1.22220 0.96115 0.96535 1.00380 1.22490 0.96153 0.99326 0.99101 0.84315 0.85502 0.93098 0.91372 0.91500 0.93064 0.92645 0.96170 0.94621 0.92561 0.93186 0.91367 0.90449 0.91301 0.91267 0.93740 0.93114 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -15.67 18.54 20.01 0.37 -15.30 16 2 C 0.24 5.73 15.43 89.44 1.38 7.11 16 3 C -0.02 -0.29 5.70 28.79 0.16 -0.13 16 4 C -0.11 -2.59 5.17 30.59 0.16 -2.43 16 5 C -0.12 -3.56 5.54 30.59 0.17 -3.39 16 6 C 0.14 5.95 5.28 86.38 0.46 6.41 16 7 N -0.59 -26.55 2.38 -674.00 -1.60 -28.15 16 8 C -0.23 -11.53 7.75 84.03 0.65 -10.87 16 9 H 0.05 2.69 6.94 -2.91 -0.02 2.67 16 10 C -0.04 -1.97 4.96 84.86 0.42 -1.55 16 11 N -0.92 -51.83 11.48 21.65 0.25 -51.58 16 12 Si 0.94 43.22 29.61 68.60 2.03 45.25 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 15 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 16 C 0.16 6.10 3.42 45.72 0.16 6.26 16 17 C -0.13 -4.04 6.43 31.70 0.20 -3.84 16 18 C -0.11 -3.04 6.91 31.91 0.22 -2.82 16 19 C -0.11 -3.63 6.83 31.67 0.22 -3.41 16 20 C -0.13 -5.05 6.25 31.32 0.20 -4.85 16 21 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 27 H 0.06 2.77 5.55 -2.39 -0.01 2.76 16 28 H 0.02 0.82 7.91 -2.39 -0.02 0.80 16 29 H 0.24 13.57 8.32 -92.71 -0.77 12.80 16 30 H 0.06 2.00 7.81 -2.39 -0.02 1.98 16 31 H 0.05 1.84 6.64 -2.39 -0.02 1.82 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.77 7.17 -2.39 -0.02 1.76 16 Total: -1.00 -62.31 311.03 6.45 -55.85 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.01 Total: 7.47 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.39 Total: -13.53 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -0.98 Total: -95.04 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -62.31 6.45 -55.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.693 kcal (2) G-P(sol) polarization free energy of solvation -62.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds