Wall clock time and date at job start Sun Mar 29 2020 22:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76198 * 103.00128 * 2 1 4 4 C 1.39322 * 119.93283 * 180.02562 * 3 2 1 5 5 C 1.36595 * 120.07089 * 180.27930 * 4 3 2 6 6 C 1.39908 * 119.92581 * 359.44646 * 5 4 3 7 7 C 1.47371 * 120.06442 * 180.25826 * 6 5 4 8 8 O 1.21640 * 119.99861 * 180.31226 * 7 6 5 9 9 N 1.34781 * 120.00273 * 0.31119 * 7 6 5 10 10 C 1.36902 * 119.99962 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00189 * 0.02562 * 10 9 7 12 12 C 1.39014 * 119.99930 * 179.97438 * 10 9 7 13 13 N 1.31386 * 119.99845 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00083 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47316 * 89.99512 * 14 12 10 16 16 H 1.48500 * 109.47382 * 209.99804 * 14 12 10 17 17 H 1.48502 * 109.47110 * 329.99637 * 14 12 10 18 18 C 1.39890 * 119.86259 * 0.56829 * 6 5 4 19 19 C 1.36597 * 119.92963 * 359.71171 * 18 6 5 20 20 H 1.08997 * 109.47327 * 59.99991 * 1 2 3 21 21 H 1.09002 * 109.47310 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47129 * 300.00067 * 1 2 3 23 23 H 1.08002 * 119.96078 * 359.97438 * 4 3 2 24 24 H 1.07998 * 120.03766 * 179.70179 * 5 4 3 25 25 H 0.96998 * 119.99884 * 0.02562 * 9 7 6 26 26 H 0.97001 * 120.00288 * 180.02562 * 13 12 10 27 27 H 1.08007 * 120.03509 * 179.68716 * 18 6 5 28 28 H 1.08004 * 119.96459 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5432 2.1226 -0.0005 5 6 3.8537 3.4527 0.0052 6 6 2.8316 4.4081 0.0000 7 6 3.1632 5.8440 0.0004 8 8 2.2736 6.6736 0.0016 9 7 4.4521 6.2381 -0.0005 10 6 4.7600 7.5720 -0.0006 11 1 3.9702 8.3086 0.0004 12 6 6.0894 7.9785 -0.0009 13 7 6.3849 9.2587 -0.0005 14 14 7.4556 6.7045 -0.0020 15 1 7.8170 6.3674 -1.4023 16 1 8.6448 7.2534 0.6978 17 1 6.9910 5.4799 0.6979 18 6 1.4943 3.9975 0.0008 19 6 1.1903 2.6658 0.0009 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.3317 1.3845 -0.0005 24 1 4.8870 3.7666 0.0097 25 1 5.1615 5.5766 -0.0017 26 1 7.3125 9.5423 -0.0011 27 1 0.7031 4.7326 0.0019 28 1 0.1580 2.3481 0.0020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082303848.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:41 Heat of formation + Delta-G solvation = -30.620668 kcal Electronic energy + Delta-G solvation = -13833.927830 eV Core-core repulsion = 11361.202832 eV Total energy + Delta-G solvation = -2472.724999 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.01753 -39.15942 -36.20674 -34.01736 -32.45243 -32.10661 -29.70924 -27.35771 -24.63343 -23.44985 -21.48100 -20.69769 -18.87444 -18.03752 -17.16617 -16.37007 -15.80976 -15.72287 -15.62877 -15.32252 -14.75334 -14.66678 -14.58195 -14.29486 -13.70632 -13.48462 -13.04830 -12.90406 -12.53313 -12.23303 -11.99408 -11.64114 -11.24232 -10.75396 -10.66516 -10.36684 -10.16537 -8.52071 -8.39085 -6.09613 -0.30379 0.36081 0.54233 1.25431 1.32099 1.39891 1.45123 1.88182 2.15657 2.72916 2.77692 3.18898 3.72377 3.87630 3.98968 4.26470 4.30570 4.31879 4.45807 4.54536 4.89771 4.95346 5.12297 5.17992 5.33691 5.49390 5.74803 5.85265 6.46381 6.73722 7.24033 7.79771 8.64493 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.045539 B = 0.005742 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.704166 B = 4875.111912 C = 5474.671041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.119 6.119 3 C -0.078 4.078 4 C -0.102 4.102 5 C -0.083 4.083 6 C -0.134 4.134 7 C 0.478 3.522 8 O -0.629 6.629 9 N -0.569 5.569 10 C -0.334 4.334 11 H 0.061 0.939 12 C -0.008 4.008 13 N -0.919 5.919 14 Si 0.957 3.043 15 H -0.251 1.251 16 H -0.266 1.266 17 H -0.233 1.233 18 C -0.061 4.061 19 C -0.132 4.132 20 H 0.093 0.907 21 H 0.130 0.870 22 H 0.093 0.907 23 H 0.157 0.843 24 H 0.137 0.863 25 H 0.389 0.611 26 H 0.284 0.716 27 H 0.125 0.875 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 -23.109 0.013 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.123 5.877 3 C -0.191 4.191 4 C -0.125 4.125 5 C -0.104 4.104 6 C -0.140 4.140 7 C 0.268 3.732 8 O -0.517 6.517 9 N -0.208 5.208 10 C -0.463 4.463 11 H 0.079 0.921 12 C -0.209 4.209 13 N -0.557 5.557 14 Si 0.776 3.224 15 H -0.175 1.175 16 H -0.190 1.190 17 H -0.156 1.156 18 C -0.082 4.082 19 C -0.155 4.155 20 H 0.112 0.888 21 H 0.148 0.852 22 H 0.112 0.888 23 H 0.175 0.825 24 H 0.155 0.845 25 H 0.226 0.774 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.167 -23.440 0.016 24.002 hybrid contribution 0.022 1.588 0.005 1.588 sum -5.145 -21.851 0.021 22.449 Atomic orbital electron populations 1.23857 0.91852 1.08786 1.06723 1.85430 1.09716 1.00665 1.91856 1.22255 0.96615 0.98029 1.02229 1.20673 0.95332 0.95415 1.01082 1.21143 0.98824 0.92832 0.97607 1.20052 0.95847 0.91549 1.06546 1.18431 0.82574 0.89120 0.83048 1.90601 1.47892 1.55694 1.57536 1.41960 1.06648 1.06933 1.65269 1.19097 0.94081 0.82473 1.50618 0.92070 1.26156 1.00054 0.99198 0.95463 1.69764 1.21117 1.16697 1.48170 0.85486 0.77658 0.78799 0.80494 1.17501 1.18996 1.15631 1.20914 0.95011 0.96530 0.95788 1.21075 0.99857 0.91508 1.03068 0.88801 0.85171 0.88810 0.82524 0.84520 0.77359 0.90598 0.85705 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.14 113.37 1.04 -0.46 15 2 S -0.12 -2.10 22.56 -56.49 -1.27 -3.37 15 3 C -0.08 -1.84 6.13 22.79 0.14 -1.70 15 4 C -0.10 -2.52 9.73 22.15 0.22 -2.30 15 5 C -0.08 -2.53 9.49 22.29 0.21 -2.32 15 6 C -0.13 -5.12 5.88 -20.07 -0.12 -5.24 15 7 C 0.48 24.02 7.71 86.65 0.67 24.69 15 8 O -0.63 -37.41 15.91 -4.16 -0.07 -37.47 15 9 N -0.57 -28.64 5.03 -310.02 -1.56 -30.20 15 10 C -0.33 -20.00 10.16 84.09 0.85 -19.15 15 11 H 0.06 4.32 7.38 -2.91 -0.02 4.30 15 12 C -0.01 -0.45 5.50 84.95 0.47 0.02 15 13 N -0.92 -54.81 13.96 21.68 0.30 -54.50 15 14 Si 0.96 38.47 27.74 68.60 1.90 40.38 15 15 H -0.25 -9.49 7.11 99.48 0.71 -8.78 15 16 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 17 H -0.23 -7.99 6.52 99.48 0.65 -7.34 15 18 C -0.06 -2.04 9.54 22.29 0.21 -1.83 15 19 C -0.13 -3.28 9.30 22.15 0.21 -3.07 15 20 H 0.09 0.90 7.74 -2.39 -0.02 0.88 15 21 H 0.13 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.09 0.90 7.74 -2.39 -0.02 0.88 15 23 H 0.16 2.98 8.06 -2.91 -0.02 2.96 15 24 H 0.14 3.76 6.39 -2.91 -0.02 3.74 15 25 H 0.39 16.36 3.77 -92.71 -0.35 16.01 15 26 H 0.28 15.34 8.31 -92.71 -0.77 14.57 15 27 H 0.12 4.38 7.64 -2.91 -0.02 4.36 15 28 H 0.16 2.81 5.86 -2.91 -0.02 2.80 15 Total: -1.00 -75.04 259.55 3.98 -71.06 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.78 Total: 25.49 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 3.89 Total: -11.37 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -1.26 Total: -84.70 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.07 Total: -37.47 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.90 Total: 40.38 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -1.27 Total: -3.37 kcal Total: -75.04 3.98 -71.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082303848.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.439 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds