Wall clock time and date at job start Sun Mar 29 2020 21:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48499 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47205 * 299.99822 * 3 2 1 6 6 H 1.48497 * 109.47148 * 59.99960 * 3 2 1 7 7 C 1.37879 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99999 * 170.04640 * 7 2 1 9 9 C 1.50699 * 119.99836 * 350.04155 * 7 2 1 10 10 C 1.53003 * 115.55313 * 324.47788 * 9 7 2 11 11 N 1.46903 * 109.46923 * 294.48074 * 10 9 7 12 12 C 1.48521 * 110.99850 * 61.33230 * 11 10 9 13 13 C 1.54289 * 104.71045 * 159.27260 * 12 11 10 14 14 H 1.09002 * 112.37697 * 98.55624 * 13 12 11 15 15 C 1.54284 * 108.81736 * 224.26933 * 13 12 11 16 16 N 1.48522 * 104.71012 * 135.73087 * 15 13 12 17 17 C 1.48510 * 104.20576 * 320.27346 * 16 15 13 18 18 C 1.54279 * 104.71801 * 39.72958 * 17 16 15 19 19 H 1.09001 * 112.38000 * 99.15065 * 18 17 16 20 20 C 1.48514 * 110.99646 * 176.73249 * 11 10 9 21 21 C 1.53005 * 117.49902 * 110.14967 * 9 7 2 22 22 C 1.53004 * 117.49764 * 178.81027 * 9 7 2 23 23 H 0.96998 * 119.99488 * 5.08041 * 1 2 3 24 24 H 1.08998 * 109.47311 * 174.47841 * 10 9 7 25 25 H 1.09003 * 109.46668 * 54.48176 * 10 9 7 26 26 H 1.08994 * 110.38801 * 278.08367 * 12 11 10 27 27 H 1.09000 * 110.38589 * 40.46850 * 12 11 10 28 28 H 1.08999 * 110.38982 * 16.93049 * 15 13 12 29 29 H 1.08995 * 110.39041 * 254.53624 * 15 13 12 30 30 H 1.00906 * 110.99584 * 200.72635 * 16 15 13 31 31 H 1.09005 * 110.38679 * 158.54017 * 17 16 15 32 32 H 1.09010 * 110.39000 * 280.91807 * 17 16 15 33 33 H 1.08993 * 110.39165 * 81.91735 * 20 11 10 34 34 H 1.08998 * 110.48788 * 319.57439 * 20 11 10 35 35 H 1.09001 * 117.50111 * 215.00115 * 21 9 7 36 36 H 1.09003 * 117.49491 * 0.02562 * 21 9 7 37 37 H 1.09004 * 117.49961 * 359.97367 * 22 9 7 38 38 H 1.09000 * 117.50073 * 144.97808 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0722 -1.2011 -0.1622 9 6 1.2679 -2.4894 0.2246 10 6 0.0999 -2.4217 1.2105 11 7 0.6107 -2.1218 2.5549 12 6 1.2986 -0.8058 2.5815 13 6 1.2950 -0.3918 4.0678 14 1 2.2407 -0.6135 4.5626 15 6 0.9007 1.0963 4.1690 16 7 -0.0743 1.1529 5.2880 17 6 -0.9007 -0.0686 5.1133 18 6 0.1018 -1.1634 4.6933 19 1 0.3965 -1.7989 5.5285 20 6 -0.5030 -1.9707 3.5258 21 6 1.1336 -3.4418 -0.9654 22 6 2.0846 -3.7826 0.1847 23 1 -0.4849 0.8368 -0.0744 24 1 -0.4197 -3.3797 1.2246 25 1 -0.5916 -1.6379 0.9013 26 1 2.3211 -0.9044 2.2171 27 1 0.7498 -0.0783 1.9834 28 1 0.4344 1.4295 3.2419 29 1 1.7751 1.7063 4.3960 30 1 -0.6422 1.9850 5.2309 31 1 -1.3848 -0.3370 6.0524 32 1 -1.6449 0.0849 4.3318 33 1 -0.8388 -2.9476 3.8735 34 1 -1.3308 -1.4237 3.0747 35 1 0.2132 -4.0200 -1.0459 36 1 1.5784 -3.1315 -1.9109 37 1 3.1546 -3.6966 -0.0048 38 1 1.7900 -4.5850 0.8611 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085283363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:29 Heat of formation + Delta-G solvation = 52.047089 kcal Electronic energy + Delta-G solvation = -18199.745236 eV Core-core repulsion = 15657.236960 eV Total energy + Delta-G solvation = -2542.508275 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.48337 -36.89944 -34.46712 -32.48258 -29.87658 -29.78697 -25.98998 -24.88709 -24.79443 -21.23208 -21.06236 -20.37197 -19.07389 -18.59712 -16.20525 -16.11375 -15.33464 -14.83134 -14.21880 -14.07261 -13.66185 -13.12350 -13.07950 -12.22407 -12.11284 -11.71132 -11.66188 -11.38203 -11.00115 -10.88589 -10.63810 -10.50141 -10.43215 -10.28164 -10.14712 -10.05014 -9.85415 -9.19659 -8.92492 -8.61634 -8.43144 -8.18498 -7.12138 -6.04037 -4.12545 3.15289 3.25995 3.30788 4.25158 4.55775 4.80611 4.95633 5.05178 5.32799 5.43474 5.60400 5.71339 5.82675 5.87176 5.94409 6.08079 6.18416 6.24616 6.27366 6.43275 6.48763 6.49920 6.65554 6.70002 6.80716 6.87998 6.95937 7.01176 7.18570 7.24892 7.38348 7.42580 7.50148 7.52188 7.93322 8.08842 8.31007 8.41694 8.80916 9.40133 10.84424 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.012348 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.511202 B = 2267.043589 C = 3121.270158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.472 4.472 8 H 0.061 0.939 9 C 0.057 3.943 10 C 0.069 3.931 11 N -0.499 5.499 12 C 0.038 3.962 13 C -0.102 4.102 14 H 0.080 0.920 15 C 0.039 3.961 16 N -0.669 5.669 17 C 0.040 3.960 18 C -0.089 4.089 19 H 0.083 0.917 20 C 0.036 3.964 21 C -0.205 4.205 22 C -0.200 4.200 23 H 0.260 0.740 24 H 0.027 0.973 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.329 0.671 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 0.672 6.810 7.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.509 4.509 8 H 0.079 0.921 9 C 0.056 3.944 10 C -0.059 4.059 11 N -0.222 5.222 12 C -0.090 4.090 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.090 4.090 16 N -0.297 5.297 17 C -0.090 4.090 18 C -0.109 4.109 19 H 0.102 0.898 20 C -0.093 4.093 21 C -0.244 4.244 22 C -0.237 4.237 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.109 0.132 7.541 7.623 hybrid contribution -0.708 1.629 -1.203 2.145 sum -1.816 1.761 6.338 6.824 Atomic orbital electron populations 1.69809 1.05712 1.26288 1.50519 1.24904 0.94781 0.98813 0.94236 0.86777 0.80845 0.83985 0.77996 1.19292 1.20955 1.20225 1.20630 0.93941 0.89281 1.47081 0.92092 1.18901 0.94266 0.88553 0.92649 1.22064 0.97596 0.99508 0.86702 1.65351 1.20054 1.29527 1.07313 1.23814 1.02161 0.91686 0.91344 1.22838 0.97846 0.92752 0.98773 0.90137 1.23089 0.96053 0.97554 0.92344 1.63748 1.16799 1.04388 1.44722 1.23061 0.95080 0.90993 0.99862 1.22569 0.94978 0.95749 0.97566 0.89835 1.23160 0.94331 0.98444 0.93361 1.22941 0.99530 1.07463 0.94422 1.22780 0.96293 1.02382 1.02287 0.92955 0.95411 0.88296 0.89330 0.89646 0.93680 0.90930 0.85704 0.90889 0.94067 0.91820 0.94527 0.91918 0.90652 0.91097 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.85 9.46 55.43 0.52 -22.33 16 2 C 0.07 1.83 2.82 -17.82 -0.05 1.78 16 3 Si 0.88 19.81 29.06 -169.99 -4.94 14.87 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.47 -12.22 6.58 -34.44 -0.23 -12.44 16 8 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 9 C 0.06 1.39 1.93 -155.65 -0.30 1.09 16 10 C 0.07 1.62 4.63 -3.82 -0.02 1.60 16 11 N -0.50 -10.85 5.43 -230.16 -1.25 -12.10 16 12 C 0.04 0.83 3.82 -2.25 -0.01 0.82 16 13 C -0.10 -1.90 4.12 -88.08 -0.36 -2.26 16 14 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 15 C 0.04 0.68 7.01 -2.25 -0.02 0.66 16 16 N -0.67 -10.29 7.62 -109.84 -0.84 -11.13 16 17 C 0.04 0.60 7.00 -2.26 -0.02 0.59 16 18 C -0.09 -1.51 4.12 -88.08 -0.36 -1.87 16 19 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.04 0.67 6.03 -2.25 -0.01 0.66 16 21 C -0.20 -4.69 9.93 -26.69 -0.26 -4.96 16 22 C -0.20 -4.47 9.96 -26.69 -0.27 -4.74 16 23 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 24 H 0.03 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.10 2.55 5.24 -51.93 -0.27 2.28 16 26 H 0.09 2.11 6.44 -51.93 -0.33 1.77 16 27 H 0.09 2.02 3.25 -51.93 -0.17 1.86 16 28 H 0.04 0.87 7.15 -51.93 -0.37 0.50 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.33 4.43 8.92 -39.29 -0.35 4.08 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.65 7.15 -51.92 -0.37 0.28 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.72 6.94 -51.93 -0.36 0.36 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 283.45 15.07 4.27 4.27 Total: -1.00 -25.74 283.45 -10.14 -35.88 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.00 Total: 9.60 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.91 Total: -19.07 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -1.56 Total: -45.55 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.94 Total: 14.87 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -25.74 -10.14 -35.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085283363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.924 kcal (2) G-P(sol) polarization free energy of solvation -25.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds