Wall clock time and date at job start Sun Mar 29 2020 21:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48499 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47205 * 299.99822 * 3 2 1 6 6 H 1.48497 * 109.47148 * 59.99960 * 3 2 1 7 7 C 1.37879 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99999 * 170.04640 * 7 2 1 9 9 C 1.50699 * 119.99836 * 350.04155 * 7 2 1 10 10 C 1.53003 * 115.55313 * 324.47788 * 9 7 2 11 11 N 1.46903 * 109.46923 * 294.48074 * 10 9 7 12 12 C 1.48521 * 110.99850 * 61.33230 * 11 10 9 13 13 C 1.54289 * 104.71045 * 159.27260 * 12 11 10 14 14 H 1.09002 * 112.37697 * 98.55624 * 13 12 11 15 15 C 1.54284 * 108.81736 * 224.26933 * 13 12 11 16 16 N 1.48522 * 104.71012 * 135.73087 * 15 13 12 17 17 C 1.48510 * 104.20576 * 320.27346 * 16 15 13 18 18 C 1.54279 * 104.71801 * 39.72958 * 17 16 15 19 19 H 1.09001 * 112.38000 * 99.15065 * 18 17 16 20 20 C 1.48514 * 110.99646 * 176.73249 * 11 10 9 21 21 C 1.53005 * 117.49902 * 110.14967 * 9 7 2 22 22 C 1.53004 * 117.49764 * 178.81027 * 9 7 2 23 23 H 0.96998 * 119.99488 * 5.08041 * 1 2 3 24 24 H 1.08998 * 109.47311 * 174.47841 * 10 9 7 25 25 H 1.09003 * 109.46668 * 54.48176 * 10 9 7 26 26 H 1.08994 * 110.38801 * 278.08367 * 12 11 10 27 27 H 1.09000 * 110.38589 * 40.46850 * 12 11 10 28 28 H 1.08999 * 110.38982 * 16.93049 * 15 13 12 29 29 H 1.08995 * 110.39041 * 254.53624 * 15 13 12 30 30 H 1.00906 * 110.99584 * 200.72635 * 16 15 13 31 31 H 1.09005 * 110.38679 * 158.54017 * 17 16 15 32 32 H 1.09010 * 110.39000 * 280.91807 * 17 16 15 33 33 H 1.08993 * 110.39165 * 81.91735 * 20 11 10 34 34 H 1.08998 * 110.48788 * 319.57439 * 20 11 10 35 35 H 1.09001 * 117.50111 * 215.00115 * 21 9 7 36 36 H 1.09003 * 117.49491 * 0.02562 * 21 9 7 37 37 H 1.09004 * 117.49961 * 359.97367 * 22 9 7 38 38 H 1.09000 * 117.50073 * 144.97808 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0722 -1.2011 -0.1622 9 6 1.2679 -2.4894 0.2246 10 6 0.0999 -2.4217 1.2105 11 7 0.6107 -2.1218 2.5549 12 6 1.2986 -0.8058 2.5815 13 6 1.2950 -0.3918 4.0678 14 1 2.2407 -0.6135 4.5626 15 6 0.9007 1.0963 4.1690 16 7 -0.0743 1.1529 5.2880 17 6 -0.9007 -0.0686 5.1133 18 6 0.1018 -1.1634 4.6933 19 1 0.3965 -1.7989 5.5285 20 6 -0.5030 -1.9707 3.5258 21 6 1.1336 -3.4418 -0.9654 22 6 2.0846 -3.7826 0.1847 23 1 -0.4849 0.8368 -0.0744 24 1 -0.4197 -3.3797 1.2246 25 1 -0.5916 -1.6379 0.9013 26 1 2.3211 -0.9044 2.2171 27 1 0.7498 -0.0783 1.9834 28 1 0.4344 1.4295 3.2419 29 1 1.7751 1.7063 4.3960 30 1 -0.6422 1.9850 5.2309 31 1 -1.3848 -0.3370 6.0524 32 1 -1.6449 0.0849 4.3318 33 1 -0.8388 -2.9476 3.8735 34 1 -1.3308 -1.4237 3.0747 35 1 0.2132 -4.0200 -1.0459 36 1 1.5784 -3.1315 -1.9109 37 1 3.1546 -3.6966 -0.0048 38 1 1.7900 -4.5850 0.8611 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085283363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:28 Heat of formation + Delta-G solvation = 34.687067 kcal Electronic energy + Delta-G solvation = -18200.498023 eV Core-core repulsion = 15657.236960 eV Total energy + Delta-G solvation = -2543.261062 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98435 -38.62502 -36.03833 -34.40742 -31.36189 -31.27289 -27.86133 -26.55532 -26.36442 -22.92573 -22.53996 -22.03090 -20.85062 -20.14085 -18.03282 -17.57795 -16.74759 -16.72039 -15.84822 -15.70200 -15.24296 -14.82628 -14.75379 -13.82832 -13.68216 -13.43864 -13.09643 -13.04212 -12.72545 -12.59907 -12.32389 -12.22137 -11.98912 -11.98048 -11.76746 -11.62216 -11.46921 -11.01452 -10.80202 -10.48038 -10.10366 -9.64041 -8.89957 -7.97164 -6.12191 1.32989 1.39895 1.47747 2.36576 2.96582 3.27406 3.35189 3.64302 3.74594 3.94788 4.06197 4.19901 4.34346 4.46111 4.49309 4.60091 4.66985 4.75736 4.78594 4.85432 4.87260 4.97375 4.99666 5.01756 5.06219 5.17584 5.29509 5.38539 5.52095 5.56782 5.58556 5.63028 5.69135 6.02829 6.34125 6.36049 6.45875 6.55614 6.82765 7.42297 8.88387 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.012348 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.511202 B = 2267.043589 C = 3121.270158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.050 3.950 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.489 4.489 8 H 0.045 0.955 9 C 0.030 3.970 10 C 0.079 3.921 11 N -0.507 5.507 12 C 0.044 3.956 13 C -0.104 4.104 14 H 0.087 0.913 15 C 0.044 3.956 16 N -0.662 5.662 17 C 0.044 3.956 18 C -0.083 4.083 19 H 0.102 0.898 20 C 0.037 3.963 21 C -0.204 4.204 22 C -0.185 4.185 23 H 0.259 0.741 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.081 0.919 30 H 0.342 0.658 31 H 0.100 0.900 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 0.727 8.462 8.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.148 4.148 3 Si 0.745 3.255 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.029 3.971 10 C -0.050 4.050 11 N -0.230 5.230 12 C -0.084 4.084 13 C -0.123 4.123 14 H 0.105 0.895 15 C -0.086 4.086 16 N -0.290 5.290 17 C -0.085 4.085 18 C -0.102 4.102 19 H 0.120 0.880 20 C -0.092 4.092 21 C -0.242 4.242 22 C -0.222 4.222 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.158 0.842 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.382 0.189 9.200 9.305 hybrid contribution -0.626 1.579 -1.734 2.428 sum -2.008 1.769 7.465 7.930 Atomic orbital electron populations 1.69921 1.06483 1.26634 1.50703 1.25272 0.95223 1.00637 0.93696 0.86124 0.79799 0.81427 0.78147 1.19474 1.21083 1.19165 1.20678 0.93316 0.90603 1.48028 0.93643 1.19047 0.95336 0.88798 0.93872 1.21845 0.96759 0.98748 0.87601 1.65314 1.21299 1.29558 1.06807 1.23560 1.00154 0.91346 0.93371 1.22812 0.99078 0.93863 0.96586 0.89471 1.22962 0.96798 0.96786 0.92072 1.63755 1.16863 1.05200 1.43219 1.23064 0.94380 0.90188 1.00913 1.22595 0.94429 0.96046 0.97177 0.88016 1.23222 0.93135 0.99642 0.93165 1.22946 1.00218 1.07095 0.93983 1.22753 0.96116 1.01480 1.01862 0.93072 0.95008 0.90693 0.92057 0.91575 0.96028 0.90018 0.84249 0.88168 0.94903 0.90092 0.95739 0.90679 0.91275 0.91082 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.04 9.46 21.45 0.20 -46.84 16 2 C 0.05 2.57 2.82 84.66 0.24 2.81 16 3 Si 0.92 40.88 29.06 68.60 1.99 42.87 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.49 -25.72 6.58 25.60 0.17 -25.55 16 8 H 0.05 2.46 7.83 -2.91 -0.02 2.44 16 9 C 0.03 1.47 1.93 -52.92 -0.10 1.37 16 10 C 0.08 3.70 4.63 86.30 0.40 4.10 16 11 N -0.51 -21.72 5.43 -882.10 -4.79 -26.52 16 12 C 0.04 1.92 3.82 86.43 0.33 2.25 16 13 C -0.10 -3.69 4.12 -9.15 -0.04 -3.72 16 14 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 15 C 0.04 1.45 7.01 86.42 0.61 2.05 16 16 N -0.66 -18.54 7.62 -501.42 -3.82 -22.36 16 17 C 0.04 1.21 7.00 86.43 0.61 1.81 16 18 C -0.08 -2.60 4.12 -9.15 -0.04 -2.63 16 19 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 20 C 0.04 1.32 6.03 86.43 0.52 1.84 16 21 C -0.20 -9.26 9.93 30.62 0.30 -8.95 16 22 C -0.18 -8.13 9.96 30.62 0.30 -7.83 16 23 H 0.26 13.11 8.32 -92.71 -0.77 12.34 16 24 H 0.03 1.43 8.09 -2.39 -0.02 1.41 16 25 H 0.08 3.93 5.24 -2.39 -0.01 3.91 16 26 H 0.06 2.96 6.44 -2.39 -0.02 2.95 16 27 H 0.07 3.17 3.25 -2.39 -0.01 3.16 16 28 H 0.02 0.82 7.15 -2.39 -0.02 0.80 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 30 H 0.34 8.29 8.92 -89.69 -0.80 7.49 16 31 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.03 0.97 7.15 -2.38 -0.02 0.95 16 33 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.02 0.94 6.94 -2.39 -0.02 0.92 16 35 H 0.07 3.17 8.14 -2.39 -0.02 3.16 16 36 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -54.07 283.45 -2.87 -56.95 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.25 Total: 28.34 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 3.30 Total: -32.45 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -8.41 Total: -95.71 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.99 Total: 42.87 kcal Total: -54.07 -2.87 -56.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085283363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.634 kcal (2) G-P(sol) polarization free energy of solvation -54.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds