Wall clock time and date at job start Sun Mar 29 2020 21:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99954 * 2 1 4 4 H 1.48505 * 109.47129 * 239.99799 * 3 2 1 5 5 H 1.48498 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46959 * 120.00006 * 3 2 1 7 7 C 1.37881 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00076 * 162.69111 * 7 2 1 9 9 C 1.50699 * 120.00065 * 342.68971 * 7 2 1 10 10 C 1.53004 * 115.54605 * 320.40984 * 9 7 2 11 11 N 1.46899 * 109.47146 * 279.94630 * 10 9 7 12 12 C 1.50185 * 111.00039 * 283.41375 * 11 10 9 13 13 C 1.50744 * 102.13791 * 213.03595 * 12 11 10 14 14 H 1.09004 * 110.05593 * 290.77561 * 13 12 11 15 15 C 1.50130 * 126.19155 * 154.77251 * 13 12 11 16 16 N 1.49708 * 104.73925 * 216.33363 * 15 13 12 17 17 C 1.50847 * 107.58782 * 7.19462 * 16 15 13 18 18 C 1.50755 * 101.83625 * 25.67363 * 17 16 15 19 19 H 1.09006 * 109.77456 * 68.78949 * 18 17 16 20 20 C 1.49705 * 111.00001 * 163.72869 * 11 10 9 21 21 C 1.52997 * 117.50169 * 174.74244 * 9 7 2 22 22 C 1.53002 * 60.03131 * 252.49712 * 21 9 7 23 23 H 0.96998 * 120.00500 * 355.09811 * 1 2 3 24 24 H 1.08994 * 109.47207 * 39.95150 * 10 9 7 25 25 H 1.09000 * 109.46748 * 159.94963 * 10 9 7 26 26 H 1.08995 * 110.87173 * 331.19416 * 12 11 10 27 27 H 1.09002 * 110.87223 * 94.87762 * 12 11 10 28 28 H 1.09001 * 110.38369 * 335.14655 * 15 13 12 29 29 H 1.09000 * 110.38675 * 97.40398 * 15 13 12 30 30 H 1.00893 * 110.99842 * 245.78864 * 16 15 13 31 31 H 1.09007 * 111.31923 * 267.48736 * 17 16 15 32 32 H 1.08995 * 110.70689 * 143.59978 * 17 16 15 33 33 H 1.09000 * 110.38318 * 233.03554 * 20 11 10 34 34 H 1.08996 * 110.38126 * 355.40621 * 20 11 10 35 35 H 1.09005 * 117.49747 * 359.97438 * 21 9 7 36 36 H 1.09002 * 117.50285 * 144.99465 * 21 9 7 37 37 H 1.09000 * 117.49873 * 107.50105 * 22 21 9 38 38 H 1.08994 * 117.49736 * 252.52257 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0478 -1.2153 -0.2777 9 6 1.3023 -2.4695 0.3894 10 6 0.3211 -2.3526 1.5576 11 7 1.0640 -2.3698 2.8247 12 6 1.5074 -3.7626 3.1698 13 6 1.4442 -3.7513 4.6759 14 1 2.2245 -3.1051 5.0780 15 6 1.2576 -4.9471 5.5643 16 7 0.4051 -4.4544 6.6921 17 6 -0.0327 -3.0512 6.3532 18 6 0.0300 -3.0630 4.8470 19 1 -0.7511 -3.7117 4.4504 20 6 0.2139 -1.8717 3.9519 21 6 2.0849 -3.7770 0.2523 22 6 0.9560 -3.4554 -0.7291 23 1 -0.4851 0.8369 0.0718 24 1 -0.2335 -1.4180 1.4741 25 1 -0.3746 -3.1914 1.5329 26 1 0.8207 -4.5020 2.7579 27 1 2.5258 -3.9425 2.8254 28 1 0.7485 -5.7455 5.0243 29 1 2.2201 -5.2963 5.9381 30 1 0.9135 -4.4709 7.5634 31 1 0.6542 -2.3115 6.7645 32 1 -1.0509 -2.8714 6.6980 33 1 0.7238 -1.0703 4.4865 34 1 -0.7494 -1.5263 3.5768 35 1 3.1076 -3.7147 -0.1197 36 1 1.9008 -4.5540 0.9942 37 1 1.2361 -3.1816 -1.7463 38 1 0.0290 -4.0205 -0.6325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085283367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:32 Heat of formation + Delta-G solvation = 63.777803 kcal Electronic energy + Delta-G solvation = -17577.316103 eV Core-core repulsion = 15035.316510 eV Total energy + Delta-G solvation = -2541.999593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18136 -36.98238 -34.79376 -32.10554 -30.17428 -29.76211 -26.17303 -25.79316 -24.85536 -21.54826 -21.16772 -20.11117 -19.79403 -18.86086 -16.55647 -15.91048 -15.50881 -14.63143 -14.54250 -14.10026 -13.71284 -13.42365 -12.89254 -12.82024 -12.48064 -12.21551 -11.69299 -11.61956 -11.23239 -11.06069 -10.91944 -10.76015 -10.61622 -10.44437 -10.19985 -10.10301 -9.80800 -9.18666 -9.04242 -8.60440 -8.58531 -7.92597 -7.43674 -6.02821 -3.97025 3.35445 3.40357 3.46115 4.08400 4.16415 4.47597 4.52011 4.84153 5.09953 5.22306 5.36324 5.52181 5.58613 5.61353 5.75563 5.80661 5.86374 5.92253 6.14847 6.18139 6.19566 6.29654 6.36345 6.46052 6.55047 6.62857 6.63286 6.74859 6.75539 6.98183 7.08296 7.23099 7.39732 7.56544 7.80858 8.01216 8.07068 8.53768 8.96586 9.60485 11.03822 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.007648 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.990911 B = 3660.172871 C = 4175.964166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.074 3.926 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.470 4.470 8 H 0.057 0.943 9 C 0.070 3.930 10 C 0.080 3.920 11 N -0.501 5.501 12 C 0.065 3.935 13 C -0.143 4.143 14 H 0.079 0.921 15 C 0.062 3.938 16 N -0.682 5.682 17 C 0.062 3.938 18 C -0.139 4.139 19 H 0.076 0.924 20 C 0.061 3.939 21 C -0.212 4.212 22 C -0.205 4.205 23 H 0.260 0.740 24 H 0.120 0.880 25 H -0.002 1.002 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.333 0.667 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 -6.081 10.755 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.128 4.128 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.506 4.506 8 H 0.075 0.925 9 C 0.069 3.931 10 C -0.047 4.047 11 N -0.224 5.224 12 C -0.062 4.062 13 C -0.163 4.163 14 H 0.097 0.903 15 C -0.067 4.067 16 N -0.310 5.310 17 C -0.067 4.067 18 C -0.159 4.159 19 H 0.095 0.905 20 C -0.068 4.068 21 C -0.249 4.249 22 C -0.244 4.244 23 H 0.070 0.930 24 H 0.138 0.862 25 H 0.017 0.983 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.064 -5.937 10.397 11.973 hybrid contribution 0.585 0.738 0.175 0.958 sum 0.521 -5.199 10.572 11.793 Atomic orbital electron populations 1.69942 1.06038 1.26873 1.48906 1.24827 0.94581 0.98818 0.94550 0.86790 0.79978 0.83371 0.78686 1.20427 1.21441 1.20095 1.20408 0.95745 0.90417 1.44079 0.92496 1.18811 0.94661 0.88180 0.91485 1.22132 0.93776 1.01972 0.86795 1.65162 1.37352 1.18080 1.01805 1.22390 1.01201 0.91254 0.91403 1.22681 0.98094 0.98051 0.97475 0.90290 1.21826 0.95776 0.96816 0.92262 1.63792 1.41437 1.21029 1.04784 1.22187 1.00657 0.89196 0.94618 1.22621 0.98001 0.99941 0.95383 0.90546 1.22047 0.97052 0.95564 0.92095 1.22959 0.95863 1.02740 1.03344 1.23010 0.97039 1.07726 0.96609 0.93014 0.86240 0.98350 0.94005 0.90083 0.90639 0.92356 0.85270 0.93168 0.90226 0.91153 0.92130 0.90959 0.91300 0.90522 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.46 11.11 55.43 0.62 -23.84 16 2 C 0.07 2.01 5.11 -17.82 -0.09 1.92 16 3 Si 0.88 21.22 29.58 -169.99 -5.03 16.19 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.47 -12.94 8.98 -34.44 -0.31 -13.25 16 8 H 0.06 1.58 7.87 -52.49 -0.41 1.17 16 9 C 0.07 1.73 1.88 -155.62 -0.29 1.44 16 10 C 0.08 1.89 4.61 -3.82 -0.02 1.87 16 11 N -0.50 -10.32 5.24 -232.39 -1.22 -11.53 16 12 C 0.07 1.15 4.58 -3.11 -0.01 1.13 16 13 C -0.14 -2.09 2.91 -90.31 -0.26 -2.35 16 14 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.06 0.77 7.44 -3.68 -0.03 0.74 16 16 N -0.68 -8.09 7.60 -111.24 -0.85 -8.94 16 17 C 0.06 0.77 7.47 -2.72 -0.02 0.75 16 18 C -0.14 -2.07 2.90 -90.30 -0.26 -2.33 16 19 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.06 1.07 6.69 -3.68 -0.02 1.05 16 21 C -0.21 -4.66 8.86 -26.73 -0.24 -4.90 16 22 C -0.21 -4.81 9.89 -26.69 -0.26 -5.07 16 23 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 24 H 0.12 3.11 5.13 -51.93 -0.27 2.85 16 25 H 0.00 -0.04 7.49 -51.93 -0.39 -0.43 16 26 H 0.04 0.75 7.11 -51.93 -0.37 0.38 16 27 H 0.08 1.46 7.21 -51.93 -0.37 1.08 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.33 3.25 8.94 -39.30 -0.35 2.90 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.10 7.47 -51.93 -0.39 0.71 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.07 1.38 5.73 -51.93 -0.30 1.08 16 37 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 38 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 LS Contribution 292.78 15.07 4.41 4.41 Total: -1.00 -27.97 292.78 -10.09 -38.07 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.21 Total: 4.65 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -1.82 Total: -19.01 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -1.45 Total: -44.32 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.97 -10.09 -38.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085283367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.846 kcal (2) G-P(sol) polarization free energy of solvation -27.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds