Wall clock time and date at job start Sun Mar 29 2020 21:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99954 * 2 1 4 4 H 1.48505 * 109.47129 * 239.99799 * 3 2 1 5 5 H 1.48498 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46959 * 120.00006 * 3 2 1 7 7 C 1.37881 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00076 * 162.69111 * 7 2 1 9 9 C 1.50699 * 120.00065 * 342.68971 * 7 2 1 10 10 C 1.53004 * 115.54605 * 320.40984 * 9 7 2 11 11 N 1.46899 * 109.47146 * 279.94630 * 10 9 7 12 12 C 1.50185 * 111.00039 * 283.41375 * 11 10 9 13 13 C 1.50744 * 102.13791 * 213.03595 * 12 11 10 14 14 H 1.09004 * 110.05593 * 290.77561 * 13 12 11 15 15 C 1.50130 * 126.19155 * 154.77251 * 13 12 11 16 16 N 1.49708 * 104.73925 * 216.33363 * 15 13 12 17 17 C 1.50847 * 107.58782 * 7.19462 * 16 15 13 18 18 C 1.50755 * 101.83625 * 25.67363 * 17 16 15 19 19 H 1.09006 * 109.77456 * 68.78949 * 18 17 16 20 20 C 1.49705 * 111.00001 * 163.72869 * 11 10 9 21 21 C 1.52997 * 117.50169 * 174.74244 * 9 7 2 22 22 C 1.53002 * 60.03131 * 252.49712 * 21 9 7 23 23 H 0.96998 * 120.00500 * 355.09811 * 1 2 3 24 24 H 1.08994 * 109.47207 * 39.95150 * 10 9 7 25 25 H 1.09000 * 109.46748 * 159.94963 * 10 9 7 26 26 H 1.08995 * 110.87173 * 331.19416 * 12 11 10 27 27 H 1.09002 * 110.87223 * 94.87762 * 12 11 10 28 28 H 1.09001 * 110.38369 * 335.14655 * 15 13 12 29 29 H 1.09000 * 110.38675 * 97.40398 * 15 13 12 30 30 H 1.00893 * 110.99842 * 245.78864 * 16 15 13 31 31 H 1.09007 * 111.31923 * 267.48736 * 17 16 15 32 32 H 1.08995 * 110.70689 * 143.59978 * 17 16 15 33 33 H 1.09000 * 110.38318 * 233.03554 * 20 11 10 34 34 H 1.08996 * 110.38126 * 355.40621 * 20 11 10 35 35 H 1.09005 * 117.49747 * 359.97438 * 21 9 7 36 36 H 1.09002 * 117.50285 * 144.99465 * 21 9 7 37 37 H 1.09000 * 117.49873 * 107.50105 * 22 21 9 38 38 H 1.08994 * 117.49736 * 252.52257 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0478 -1.2153 -0.2777 9 6 1.3023 -2.4695 0.3894 10 6 0.3211 -2.3526 1.5576 11 7 1.0640 -2.3698 2.8247 12 6 1.5074 -3.7626 3.1698 13 6 1.4442 -3.7513 4.6759 14 1 2.2245 -3.1051 5.0780 15 6 1.2576 -4.9471 5.5643 16 7 0.4051 -4.4544 6.6921 17 6 -0.0327 -3.0512 6.3532 18 6 0.0300 -3.0630 4.8470 19 1 -0.7511 -3.7117 4.4504 20 6 0.2139 -1.8717 3.9519 21 6 2.0849 -3.7770 0.2523 22 6 0.9560 -3.4554 -0.7291 23 1 -0.4851 0.8369 0.0718 24 1 -0.2335 -1.4180 1.4741 25 1 -0.3746 -3.1914 1.5329 26 1 0.8207 -4.5020 2.7579 27 1 2.5258 -3.9425 2.8254 28 1 0.7485 -5.7455 5.0243 29 1 2.2201 -5.2963 5.9381 30 1 0.9135 -4.4709 7.5634 31 1 0.6542 -2.3115 6.7645 32 1 -1.0509 -2.8714 6.6980 33 1 0.7238 -1.0703 4.4865 34 1 -0.7494 -1.5263 3.5768 35 1 3.1076 -3.7147 -0.1197 36 1 1.9008 -4.5540 0.9942 37 1 1.2361 -3.1816 -1.7463 38 1 0.0290 -4.0205 -0.6325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085283367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:32 Heat of formation + Delta-G solvation = 44.633350 kcal Electronic energy + Delta-G solvation = -17578.146269 eV Core-core repulsion = 15035.316510 eV Total energy + Delta-G solvation = -2542.829759 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44880 -38.67556 -36.21773 -34.17021 -31.38063 -31.13642 -27.76227 -27.33904 -26.52507 -22.99804 -22.87777 -21.42229 -21.05385 -20.69546 -18.26252 -17.27611 -16.73746 -16.62156 -15.97281 -15.51493 -15.43791 -14.92147 -14.33052 -14.29963 -13.75835 -13.57420 -13.33333 -13.05884 -12.90877 -12.75852 -12.49102 -12.37624 -12.24720 -11.99257 -11.94292 -11.68715 -11.11082 -11.10186 -10.94178 -10.49208 -9.91211 -9.53370 -9.02648 -8.09674 -6.09698 1.42737 1.45951 1.53361 2.47369 2.94311 2.97119 3.09749 3.19404 3.68679 3.75902 4.05494 4.27271 4.32918 4.36968 4.41108 4.46382 4.55636 4.64526 4.71586 4.76965 4.77615 4.83815 4.91221 4.94877 5.00414 5.08944 5.13279 5.18818 5.26844 5.32232 5.55175 5.60098 5.62656 5.98201 6.17524 6.35833 6.43401 6.51596 6.88126 7.49483 8.95736 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.007648 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.990911 B = 3660.172871 C = 4175.964166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.035 3.965 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.492 4.492 8 H 0.045 0.955 9 C 0.039 3.961 10 C 0.096 3.904 11 N -0.523 5.523 12 C 0.067 3.933 13 C -0.132 4.132 14 H 0.077 0.923 15 C 0.068 3.932 16 N -0.684 5.684 17 C 0.069 3.931 18 C -0.132 4.132 19 H 0.063 0.937 20 C 0.061 3.939 21 C -0.186 4.186 22 C -0.209 4.209 23 H 0.261 0.739 24 H 0.090 0.910 25 H -0.005 1.005 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.349 0.651 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 -6.718 12.467 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.038 3.962 10 C -0.032 4.032 11 N -0.247 5.247 12 C -0.060 4.060 13 C -0.152 4.152 14 H 0.096 0.904 15 C -0.061 4.061 16 N -0.313 5.313 17 C -0.060 4.060 18 C -0.152 4.152 19 H 0.081 0.919 20 C -0.067 4.067 21 C -0.223 4.223 22 C -0.248 4.248 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.013 0.987 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.165 0.835 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.581 -6.583 12.121 13.806 hybrid contribution 0.391 0.924 -0.381 1.073 sum 0.972 -5.658 11.741 13.069 Atomic orbital electron populations 1.70041 1.06990 1.27458 1.49401 1.25433 0.95270 1.01425 0.94356 0.85908 0.78854 0.80067 0.78543 1.20090 1.20885 1.20061 1.20637 0.95408 0.92138 1.44744 0.93703 1.18937 0.96198 0.88378 0.92637 1.21765 0.93298 1.00169 0.87952 1.65066 1.37720 1.20246 1.01622 1.22316 1.00524 0.89499 0.93676 1.22579 0.97637 0.99386 0.95614 0.90426 1.21808 0.96975 0.95497 0.91839 1.63748 1.41739 1.20512 1.05345 1.22171 1.01677 0.89873 0.92293 1.22471 0.97850 0.97981 0.96897 0.91882 1.21990 0.96027 0.96787 0.91897 1.22941 0.95307 1.01469 1.02615 1.22989 0.98233 1.07590 0.95981 0.93001 0.89168 0.98668 0.94316 0.90524 0.91022 0.90061 0.83521 0.91988 0.89346 0.90816 0.93471 0.90902 0.89067 0.91577 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.90 11.11 21.45 0.24 -50.66 16 2 C 0.03 1.92 5.11 84.66 0.43 2.35 16 3 Si 0.94 43.84 29.58 68.60 2.03 45.87 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.49 -27.49 8.98 25.60 0.23 -27.26 16 8 H 0.04 2.53 7.87 -2.91 -0.02 2.51 16 9 C 0.04 1.98 1.88 -52.90 -0.10 1.88 16 10 C 0.10 4.57 4.61 86.30 0.40 4.97 16 11 N -0.52 -21.50 5.24 -889.14 -4.66 -26.16 16 12 C 0.07 2.29 4.58 84.93 0.39 2.68 16 13 C -0.13 -3.58 2.91 -10.59 -0.03 -3.61 16 14 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 15 C 0.07 1.47 7.44 84.83 0.63 2.10 16 16 N -0.68 -13.97 7.60 -505.86 -3.84 -17.82 16 17 C 0.07 1.50 7.47 84.80 0.63 2.13 16 18 C -0.13 -3.72 2.90 -10.59 -0.03 -3.75 16 19 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 20 C 0.06 2.13 6.69 84.83 0.57 2.70 16 21 C -0.19 -8.05 8.86 30.59 0.27 -7.78 16 22 C -0.21 -9.80 9.89 30.62 0.30 -9.50 16 23 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 24 H 0.09 4.84 5.13 -2.39 -0.01 4.83 16 25 H 0.00 -0.22 7.49 -2.39 -0.02 -0.24 16 26 H 0.04 1.34 7.11 -2.39 -0.02 1.32 16 27 H 0.08 2.65 7.21 -2.39 -0.02 2.63 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.35 5.47 8.94 -89.70 -0.80 4.67 16 31 H 0.06 1.23 8.14 -2.38 -0.02 1.22 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.05 1.75 7.47 -2.39 -0.02 1.73 16 35 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.09 3.50 5.73 -2.39 -0.01 3.49 16 37 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.07 3.11 8.09 -2.39 -0.02 3.09 16 Total: -1.00 -59.46 292.78 -2.31 -61.77 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.23 Total: 20.09 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 3.69 Total: -33.09 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -8.27 Total: -94.64 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -59.46 -2.31 -61.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085283367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.399 kcal (2) G-P(sol) polarization free energy of solvation -59.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds