Wall clock time and date at job start Sun Mar 29 2020 22:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46892 * 109.47689 * 2 1 4 4 C 1.46900 * 111.00548 * 196.65548 * 3 2 1 5 5 C 1.52997 * 109.47304 * 64.47393 * 4 3 2 6 6 H 1.09005 * 109.46814 * 305.00381 * 5 4 3 7 7 C 1.52999 * 109.47094 * 65.00123 * 5 4 3 8 8 C 1.47194 * 109.47306 * 185.00568 * 5 4 3 9 9 N 5.27591 * 150.23766 * 289.41461 * 2 1 3 10 10 C 1.46901 * 111.00243 * 72.69437 * 3 2 1 11 11 C 1.52991 * 109.47639 * 203.86927 * 10 3 2 12 12 C 1.50703 * 115.54922 * 292.69260 * 11 10 3 13 13 H 1.08006 * 119.99503 * 144.77995 * 12 11 10 14 14 C 1.37871 * 120.00380 * 324.78778 * 12 11 10 15 15 N 1.31516 * 119.99701 * 344.77952 * 14 12 11 16 16 Si 1.86803 * 120.00405 * 164.78041 * 14 12 11 17 17 H 1.48497 * 109.46745 * 4.99020 * 16 14 12 18 18 H 1.48503 * 109.47025 * 124.99195 * 16 14 12 19 19 H 1.48493 * 109.47123 * 244.99090 * 16 14 12 20 20 C 1.52998 * 117.50208 * 147.02655 * 11 10 3 21 21 C 1.53003 * 117.50186 * 78.36563 * 11 10 3 22 22 H 1.09000 * 109.46966 * 293.83639 * 1 2 3 23 23 H 1.09005 * 109.47118 * 53.83105 * 1 2 3 24 24 H 1.09002 * 109.47678 * 173.82898 * 1 2 3 25 25 H 1.09010 * 109.46919 * 239.99909 * 2 1 3 26 26 H 1.08998 * 109.46831 * 120.00366 * 2 1 3 27 27 H 1.09001 * 109.46539 * 304.47389 * 4 3 2 28 28 H 1.09003 * 109.47037 * 184.47630 * 4 3 2 29 29 H 1.09004 * 109.46789 * 180.02562 * 7 5 4 30 30 H 1.08997 * 109.46981 * 60.00112 * 7 5 4 31 31 H 1.09000 * 109.47364 * 299.99791 * 7 5 4 32 32 H 1.09006 * 109.47286 * 323.87389 * 10 3 2 33 33 H 1.09005 * 109.46820 * 83.86775 * 10 3 2 34 34 H 0.97007 * 119.99853 * 185.05655 * 15 14 12 35 35 H 1.09004 * 117.49676 * 359.97438 * 20 11 10 36 36 H 1.09000 * 117.50446 * 145.02010 * 20 11 10 37 37 H 1.08995 * 117.49936 * 214.98133 * 21 11 10 38 38 H 1.08997 * 117.49347 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4339 1.4432 -0.3931 5 6 3.5810 0.9696 -1.8404 6 1 3.1415 -0.0224 -1.9445 7 6 2.8613 1.9466 -2.7723 8 6 5.0083 0.9137 -2.1958 9 7 6.1099 0.8706 -2.4701 10 6 1.8107 2.0173 1.3093 11 6 1.7559 3.5367 1.1390 12 6 3.0467 4.1904 0.7177 13 1 3.0288 5.0444 0.0566 14 6 4.2503 3.6984 1.1758 15 7 4.2761 2.8693 2.1964 16 14 5.8446 4.2094 0.3471 17 1 5.5577 5.2342 -0.6885 18 1 6.7701 4.7757 1.3610 19 1 6.4733 3.0244 -0.2898 20 6 0.8421 4.3209 2.0829 21 6 0.4528 4.1422 0.6133 22 1 -0.3633 0.4153 0.9400 23 1 -0.3634 0.6065 -0.8297 24 1 -0.3634 -1.0217 -0.1105 25 1 1.8933 -0.5139 -0.8901 26 1 1.8932 -0.5139 0.8899 27 1 4.0198 0.7981 0.2617 28 1 3.7926 2.4691 -0.3082 29 1 2.9657 1.6089 -3.8035 30 1 3.3008 2.9386 -2.6682 31 1 1.8043 1.9880 -2.5092 32 1 0.8717 1.6655 1.7370 33 1 2.6335 1.7556 1.9747 34 1 5.1255 2.5806 2.5654 35 1 0.2796 3.7542 2.8250 36 1 1.1743 5.3098 2.3988 37 1 0.5291 5.0135 -0.0370 38 1 -0.3653 3.4579 0.3884 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:16 Heat of formation + Delta-G solvation = 44.630933 kcal Electronic energy + Delta-G solvation = -17910.151018 eV Core-core repulsion = 15367.321154 eV Total energy + Delta-G solvation = -2542.829864 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.85106 -38.09621 -36.80796 -34.47373 -33.98752 -31.00249 -27.81336 -27.55194 -25.64182 -23.81120 -22.76053 -21.56453 -20.63829 -18.53935 -17.88333 -16.86966 -16.29396 -15.97672 -15.77203 -15.20993 -14.94749 -14.58555 -14.41589 -14.10652 -13.76984 -13.46117 -13.35731 -12.94365 -12.89532 -12.72710 -12.49527 -12.43109 -12.30012 -12.23691 -11.92600 -11.77598 -11.68020 -11.22405 -11.01236 -10.74091 -10.38466 -9.81819 -8.83966 -8.01892 -6.06441 1.25627 1.39310 1.40148 1.68057 1.72262 2.32241 2.87409 3.01281 3.51009 3.92791 4.04347 4.23535 4.30278 4.44026 4.51042 4.66811 4.74253 4.88201 4.94412 4.98118 5.08180 5.11045 5.15214 5.18753 5.24401 5.27151 5.34601 5.50352 5.56821 5.61693 5.63374 5.66754 5.73848 6.08525 6.49853 6.53454 6.56748 6.70750 6.93597 7.44942 8.88284 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.014505 C = 0.009291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.568062 B = 1929.868128 C = 3012.838895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.035 3.965 3 N -0.509 5.509 4 C 0.051 3.949 5 C 0.004 3.996 6 H 0.139 0.861 7 C -0.124 4.124 8 C 0.236 3.764 9 N -0.497 5.497 10 C 0.091 3.909 11 C 0.039 3.961 12 C -0.479 4.479 13 H 0.048 0.952 14 C 0.060 3.940 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.266 1.266 18 H -0.287 1.287 19 H -0.285 1.285 20 C -0.213 4.213 21 C -0.173 4.173 22 H 0.039 0.961 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.014 0.986 27 H 0.002 0.998 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.258 0.742 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 -5.906 -5.517 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 N -0.232 5.232 4 C -0.078 4.078 5 C -0.017 4.017 6 H 0.157 0.843 7 C -0.182 4.182 8 C -0.081 4.081 9 N -0.174 5.174 10 C -0.036 4.036 11 C 0.038 3.962 12 C -0.517 4.517 13 H 0.066 0.934 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.252 4.252 21 C -0.210 4.210 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.032 0.968 27 H 0.020 0.980 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.535 -5.871 -6.203 10.754 hybrid contribution 1.470 0.141 0.835 1.697 sum -5.064 -5.730 -5.367 9.343 Atomic orbital electron populations 1.21697 0.93873 1.01930 1.01797 1.22331 0.97098 0.89421 1.00383 1.61839 1.15926 1.15758 1.29704 1.22519 0.90153 1.04192 0.90946 1.19282 0.80612 1.04504 0.97347 0.84337 1.21636 1.02199 0.96926 0.97488 1.29918 0.95584 0.91124 0.91473 1.81118 1.13854 1.11135 1.11269 1.21649 0.99572 0.92872 0.89547 1.18928 0.88494 0.91321 0.97431 1.20705 0.90211 1.13075 1.27722 0.93373 1.25022 0.99424 0.94880 0.94743 1.69905 1.25487 1.34874 1.22542 0.86580 0.83040 0.78704 0.79718 1.19043 1.21287 1.21121 1.22966 1.07678 1.01704 0.92802 1.22715 1.00691 1.02579 0.95022 0.94220 0.91566 0.90890 0.89288 0.96773 0.98009 0.87500 0.90723 0.93992 0.88460 0.93548 0.91772 0.93161 0.90842 0.91930 0.91223 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.89 71.98 0.71 -2.42 16 2 C 0.04 0.98 5.54 86.30 0.48 1.45 16 3 N -0.51 -17.82 3.83 -896.25 -3.43 -21.25 16 4 C 0.05 1.95 3.28 86.30 0.28 2.23 16 5 C 0.00 0.12 2.69 -12.60 -0.03 0.09 16 6 H 0.14 3.13 6.03 -2.38 -0.01 3.12 16 7 C -0.12 -3.31 9.04 71.98 0.65 -2.65 16 8 C 0.24 8.43 14.65 89.44 1.31 9.74 16 9 N -0.50 -20.20 18.54 20.00 0.37 -19.83 16 10 C 0.09 3.78 4.56 86.30 0.39 4.17 16 11 C 0.04 1.74 1.97 -52.93 -0.10 1.64 16 12 C -0.48 -24.02 7.61 25.60 0.19 -23.82 16 13 H 0.05 2.49 7.86 -2.91 -0.02 2.47 16 14 C 0.06 3.03 3.07 84.65 0.26 3.29 16 15 N -0.89 -46.52 10.46 21.45 0.22 -46.30 16 16 Si 0.89 42.35 28.59 68.60 1.96 44.31 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 19 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 20 C -0.21 -8.98 9.92 30.62 0.30 -8.68 16 21 C -0.17 -6.72 9.96 30.62 0.30 -6.42 16 22 H 0.04 1.01 6.77 -2.39 -0.02 0.99 16 23 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.09 2.00 5.77 -2.38 -0.01 1.98 16 26 H 0.01 0.42 8.04 -2.39 -0.02 0.40 16 27 H 0.00 0.07 8.13 -2.39 -0.02 0.05 16 28 H 0.11 4.80 2.52 -2.39 -0.01 4.79 16 29 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 2.47 7.75 -2.39 -0.02 2.45 16 32 H 0.05 1.79 6.28 -2.38 -0.01 1.78 16 33 H 0.06 3.13 5.24 -2.38 -0.01 3.11 16 34 H 0.26 13.32 8.32 -92.70 -0.77 12.55 16 35 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 36 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -56.76 302.74 4.92 -51.84 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.04 Total: 12.61 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 4.75 Total: -21.38 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.83 Total: -87.38 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.96 Total: 44.31 kcal Total: -56.76 4.92 -51.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.470 kcal (2) G-P(sol) polarization free energy of solvation -56.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds