Wall clock time and date at job start Sun Mar 29 2020 22:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.46801 * 2 1 4 4 C 1.46899 * 111.00136 * 301.53518 * 3 2 1 5 5 C 1.53009 * 109.47162 * 295.09972 * 4 3 2 6 6 H 1.09000 * 109.46569 * 54.38792 * 5 4 3 7 7 C 1.52998 * 109.46846 * 294.39001 * 5 4 3 8 8 C 1.47192 * 109.47244 * 174.38474 * 5 4 3 9 9 N 5.27107 * 84.49831 * 300.37274 * 2 1 3 10 10 C 1.46901 * 111.00132 * 65.48941 * 3 2 1 11 11 C 1.53005 * 109.47064 * 73.31233 * 10 3 2 12 12 C 1.50697 * 115.55286 * 55.66568 * 11 10 3 13 13 H 1.08005 * 119.99863 * 273.14827 * 12 11 10 14 14 C 1.37871 * 119.99972 * 92.86594 * 12 11 10 15 15 N 1.31516 * 120.00503 * 173.92854 * 14 12 11 16 16 Si 1.86803 * 120.00026 * 353.92917 * 14 12 11 17 17 H 1.48498 * 109.47190 * 94.39161 * 16 14 12 18 18 H 1.48497 * 109.47312 * 214.39531 * 16 14 12 19 19 H 1.48507 * 109.47182 * 334.39542 * 16 14 12 20 20 C 1.52992 * 117.49530 * 201.34324 * 11 10 3 21 21 C 1.53002 * 117.49559 * 269.99814 * 11 10 3 22 22 H 1.08998 * 109.46476 * 184.77720 * 1 2 3 23 23 H 1.09000 * 109.46884 * 304.77298 * 1 2 3 24 24 H 1.08997 * 109.46736 * 64.77774 * 1 2 3 25 25 H 1.09000 * 109.47098 * 239.99997 * 2 1 3 26 26 H 1.08996 * 109.47246 * 119.99667 * 2 1 3 27 27 H 1.09000 * 109.47312 * 55.09715 * 4 3 2 28 28 H 1.08995 * 109.47791 * 175.10161 * 4 3 2 29 29 H 1.09000 * 109.47241 * 65.01934 * 7 5 4 30 30 H 1.09007 * 109.46773 * 185.02060 * 7 5 4 31 31 H 1.08998 * 109.47318 * 305.01511 * 7 5 4 32 32 H 1.08994 * 109.46956 * 313.30893 * 10 3 2 33 33 H 1.08998 * 109.46927 * 193.30543 * 10 3 2 34 34 H 0.96991 * 120.00311 * 179.97438 * 15 14 12 35 35 H 1.09008 * 117.49468 * 215.00355 * 20 11 10 36 36 H 1.09005 * 117.50275 * 0.02562 * 20 11 10 37 37 H 1.09006 * 117.49692 * 359.97438 * 21 11 10 38 38 H 1.09002 * 117.49717 * 144.96924 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5189 2.1204 -1.1689 5 6 2.0962 1.5043 -2.4449 6 1 1.8756 0.4371 -2.4650 7 6 3.6117 1.7124 -2.4711 8 6 1.4914 2.1525 -3.6199 9 7 1.0247 2.6529 -4.5267 10 6 1.6587 2.0710 1.2478 11 6 2.5318 1.5461 2.3894 12 6 4.0192 1.6457 2.1688 13 1 4.5431 0.8538 1.6541 14 6 4.7104 2.7505 2.6190 15 7 6.0223 2.7850 2.5342 16 14 3.7833 4.1985 3.3493 17 1 3.7275 4.0563 4.8264 18 1 4.4824 5.4611 2.9996 19 1 2.4029 4.2291 2.8026 20 6 2.0152 1.7332 3.8173 21 6 2.0138 0.3421 3.1787 22 1 -0.3632 -1.0241 0.0856 23 1 -0.3633 0.5861 0.8442 24 1 -0.3633 0.4379 -0.9297 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.4308 2.0609 -1.1968 28 1 1.8239 3.1645 -1.0994 29 1 4.0688 1.1583 -1.6513 30 1 4.0114 1.3535 -3.4197 31 1 3.8347 2.7737 -2.3612 32 1 0.6098 1.8819 1.4761 33 1 1.8179 3.1431 1.1322 34 1 6.5085 3.5624 2.8505 35 1 2.7513 1.9285 4.5972 36 1 1.0532 2.2298 3.9435 37 1 1.0508 -0.0758 2.8849 38 1 2.7489 -0.3782 3.5380 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:18 Heat of formation + Delta-G solvation = 56.613214 kcal Electronic energy + Delta-G solvation = -17413.127727 eV Core-core repulsion = 14870.817454 eV Total energy + Delta-G solvation = -2542.310273 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.87111 -37.02178 -35.72397 -32.95312 -31.92654 -29.86916 -26.85111 -25.55935 -24.75805 -23.31712 -21.60000 -20.14199 -18.69697 -17.40902 -16.10656 -15.57780 -15.37792 -14.65157 -14.22509 -14.04664 -13.69117 -13.49652 -12.83595 -12.69189 -12.59734 -12.41699 -12.13571 -12.00940 -11.61090 -11.43249 -11.30421 -11.12498 -10.97586 -10.77674 -10.50125 -10.39001 -10.25790 -9.95762 -9.55375 -8.89787 -8.48092 -8.41070 -7.60133 -5.98948 -3.96417 2.79999 2.84949 3.33517 3.44052 3.46240 3.90864 4.50698 4.55303 4.91748 5.03028 5.14395 5.29044 5.35161 5.38813 5.49227 5.65705 5.74247 5.84983 5.88872 6.00689 6.07344 6.08550 6.14155 6.18256 6.28490 6.29957 6.46571 6.53594 6.61919 6.67942 6.75585 7.08884 7.19009 7.56770 7.66444 7.70279 7.89207 8.65667 9.08588 9.65796 11.13650 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.008619 C = 0.007304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.933699 B = 3247.801919 C = 3832.526702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.044 3.956 3 N -0.501 5.501 4 C 0.058 3.942 5 C 0.005 3.995 6 H 0.112 0.888 7 C -0.135 4.135 8 C 0.220 3.780 9 N -0.453 5.453 10 C 0.091 3.909 11 C 0.015 3.985 12 C -0.455 4.455 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.903 5.903 16 Si 0.876 3.124 17 H -0.284 1.284 18 H -0.298 1.298 19 H -0.262 1.262 20 C -0.206 4.206 21 C -0.185 4.185 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.067 0.933 34 H 0.261 0.739 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 -4.204 -4.436 10.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.084 4.084 3 N -0.223 5.223 4 C -0.072 4.072 5 C -0.016 4.016 6 H 0.130 0.870 7 C -0.193 4.193 8 C -0.098 4.098 9 N -0.129 5.129 10 C -0.036 4.036 11 C 0.014 3.986 12 C -0.493 4.493 13 H 0.099 0.901 14 C -0.127 4.127 15 N -0.541 5.541 16 Si 0.705 3.295 17 H -0.211 1.211 18 H -0.225 1.225 19 H -0.187 1.187 20 C -0.244 4.244 21 C -0.223 4.223 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.895 -3.338 -5.806 11.134 hybrid contribution -1.225 0.781 0.909 1.714 sum -10.120 -2.557 -4.898 11.530 Atomic orbital electron populations 1.22480 0.99578 1.01807 1.01578 1.22279 0.91566 0.91251 1.03283 1.61907 1.58248 1.01215 1.00885 1.22110 0.96783 0.98826 0.89436 1.18970 0.96989 0.99641 0.86044 0.87016 1.21720 0.90958 1.03740 1.02873 1.29456 0.92795 0.93200 0.94397 1.81166 1.09964 1.09829 1.11907 1.21920 0.94584 0.97883 0.89208 1.19378 0.96032 0.96507 0.86667 1.20111 0.87262 1.05776 1.36119 0.90135 1.24922 0.94427 0.97917 0.95429 1.69891 1.06233 1.29919 1.48082 0.86936 0.80708 0.82462 0.79401 1.21052 1.22498 1.18666 1.22964 1.00974 1.00790 0.99626 1.22892 1.00540 0.91421 1.07404 0.92586 0.92364 0.93070 0.91268 0.89222 0.94606 0.90141 0.88347 0.93123 0.91965 0.96511 0.91431 0.92920 0.89470 0.91341 0.91354 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.33 9.21 37.16 0.34 -1.99 16 2 C 0.04 0.61 5.62 -3.82 -0.02 0.58 16 3 N -0.50 -8.00 3.95 -234.62 -0.93 -8.93 16 4 C 0.06 0.79 3.99 -3.82 -0.02 0.78 16 5 C 0.01 0.06 2.67 -93.41 -0.25 -0.18 16 6 H 0.11 1.13 6.30 -51.93 -0.33 0.80 16 7 C -0.13 -1.71 8.98 37.16 0.33 -1.37 16 8 C 0.22 2.95 14.64 -20.76 -0.30 2.64 16 9 N -0.45 -7.11 18.54 42.15 0.78 -6.33 16 10 C 0.09 1.68 4.57 -3.82 -0.02 1.66 16 11 C 0.02 0.33 0.67 -155.66 -0.10 0.22 16 12 C -0.46 -11.70 9.14 -34.44 -0.31 -12.01 16 13 H 0.08 2.29 8.06 -52.48 -0.42 1.86 16 14 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 15 N -0.90 -26.51 13.96 55.43 0.77 -25.73 16 16 Si 0.88 21.02 24.81 -169.99 -4.22 16.81 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.26 -5.89 5.71 56.52 0.32 -5.57 16 20 C -0.21 -4.16 7.49 -26.70 -0.20 -4.36 16 21 C -0.19 -3.47 8.36 -26.70 -0.22 -3.69 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.76 6.11 -51.93 -0.32 0.44 16 24 H 0.05 0.57 6.54 -51.93 -0.34 0.23 16 25 H 0.07 0.82 6.39 -51.93 -0.33 0.49 16 26 H 0.09 1.38 5.89 -51.93 -0.31 1.07 16 27 H 0.04 0.46 6.11 -51.93 -0.32 0.14 16 28 H 0.08 1.16 7.88 -51.93 -0.41 0.75 16 29 H 0.10 1.42 7.91 -51.93 -0.41 1.01 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.02 0.29 5.85 -51.93 -0.30 -0.02 16 33 H 0.07 1.33 6.46 -51.93 -0.34 1.00 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.09 1.90 6.94 -51.92 -0.36 1.54 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.12 7.92 -51.93 -0.41 0.71 16 38 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -28.71 299.37 -5.87 -34.58 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.92 Total: 0.89 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.87 Total: -15.80 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.63 Total: -40.99 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.22 Total: 16.81 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.71 -5.87 -34.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.195 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds