Wall clock time and date at job start Sun Mar 29 2020 22:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.46801 * 2 1 4 4 C 1.46899 * 111.00136 * 301.53518 * 3 2 1 5 5 C 1.53009 * 109.47162 * 295.09972 * 4 3 2 6 6 H 1.09000 * 109.46569 * 54.38792 * 5 4 3 7 7 C 1.52998 * 109.46846 * 294.39001 * 5 4 3 8 8 C 1.47192 * 109.47244 * 174.38474 * 5 4 3 9 9 N 5.27107 * 84.49831 * 300.37274 * 2 1 3 10 10 C 1.46901 * 111.00132 * 65.48941 * 3 2 1 11 11 C 1.53005 * 109.47064 * 73.31233 * 10 3 2 12 12 C 1.50697 * 115.55286 * 55.66568 * 11 10 3 13 13 H 1.08005 * 119.99863 * 273.14827 * 12 11 10 14 14 C 1.37871 * 119.99972 * 92.86594 * 12 11 10 15 15 N 1.31516 * 120.00503 * 173.92854 * 14 12 11 16 16 Si 1.86803 * 120.00026 * 353.92917 * 14 12 11 17 17 H 1.48498 * 109.47190 * 94.39161 * 16 14 12 18 18 H 1.48497 * 109.47312 * 214.39531 * 16 14 12 19 19 H 1.48507 * 109.47182 * 334.39542 * 16 14 12 20 20 C 1.52992 * 117.49530 * 201.34324 * 11 10 3 21 21 C 1.53002 * 117.49559 * 269.99814 * 11 10 3 22 22 H 1.08998 * 109.46476 * 184.77720 * 1 2 3 23 23 H 1.09000 * 109.46884 * 304.77298 * 1 2 3 24 24 H 1.08997 * 109.46736 * 64.77774 * 1 2 3 25 25 H 1.09000 * 109.47098 * 239.99997 * 2 1 3 26 26 H 1.08996 * 109.47246 * 119.99667 * 2 1 3 27 27 H 1.09000 * 109.47312 * 55.09715 * 4 3 2 28 28 H 1.08995 * 109.47791 * 175.10161 * 4 3 2 29 29 H 1.09000 * 109.47241 * 65.01934 * 7 5 4 30 30 H 1.09007 * 109.46773 * 185.02060 * 7 5 4 31 31 H 1.08998 * 109.47318 * 305.01511 * 7 5 4 32 32 H 1.08994 * 109.46956 * 313.30893 * 10 3 2 33 33 H 1.08998 * 109.46927 * 193.30543 * 10 3 2 34 34 H 0.96991 * 120.00311 * 179.97438 * 15 14 12 35 35 H 1.09008 * 117.49468 * 215.00355 * 20 11 10 36 36 H 1.09005 * 117.50275 * 0.02562 * 20 11 10 37 37 H 1.09006 * 117.49692 * 359.97438 * 21 11 10 38 38 H 1.09002 * 117.49717 * 144.96924 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5189 2.1204 -1.1689 5 6 2.0962 1.5043 -2.4449 6 1 1.8756 0.4371 -2.4650 7 6 3.6117 1.7124 -2.4711 8 6 1.4914 2.1525 -3.6199 9 7 1.0247 2.6529 -4.5267 10 6 1.6587 2.0710 1.2478 11 6 2.5318 1.5461 2.3894 12 6 4.0192 1.6457 2.1688 13 1 4.5431 0.8538 1.6541 14 6 4.7104 2.7505 2.6190 15 7 6.0223 2.7850 2.5342 16 14 3.7833 4.1985 3.3493 17 1 3.7275 4.0563 4.8264 18 1 4.4824 5.4611 2.9996 19 1 2.4029 4.2291 2.8026 20 6 2.0152 1.7332 3.8173 21 6 2.0138 0.3421 3.1787 22 1 -0.3632 -1.0241 0.0856 23 1 -0.3633 0.5861 0.8442 24 1 -0.3633 0.4379 -0.9297 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.4308 2.0609 -1.1968 28 1 1.8239 3.1645 -1.0994 29 1 4.0688 1.1583 -1.6513 30 1 4.0114 1.3535 -3.4197 31 1 3.8347 2.7737 -2.3612 32 1 0.6098 1.8819 1.4761 33 1 1.8179 3.1431 1.1322 34 1 6.5085 3.5624 2.8505 35 1 2.7513 1.9285 4.5972 36 1 1.0532 2.2298 3.9435 37 1 1.0508 -0.0758 2.8849 38 1 2.7489 -0.3782 3.5380 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:18 Heat of formation + Delta-G solvation = 39.019996 kcal Electronic energy + Delta-G solvation = -17413.890626 eV Core-core repulsion = 14870.817454 eV Total energy + Delta-G solvation = -2543.073173 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12696 -38.34896 -37.04394 -34.16805 -33.87360 -30.97583 -28.22410 -27.24723 -26.08639 -24.41121 -23.15492 -21.42591 -20.32868 -18.54344 -17.86924 -16.95879 -16.55785 -16.22624 -15.59188 -15.27353 -15.05817 -14.63763 -14.59762 -14.14172 -13.82600 -13.56533 -13.42912 -13.21065 -12.98389 -12.92567 -12.55612 -12.42471 -12.18592 -12.11702 -12.00520 -11.75862 -11.72920 -11.38673 -11.30996 -10.64345 -10.42869 -10.09919 -8.78738 -8.09859 -6.08666 1.41442 1.46329 1.55927 1.71146 1.77171 2.50043 2.78188 3.24318 3.28214 3.60767 3.89784 4.10183 4.28880 4.35618 4.36420 4.46089 4.54557 4.56467 4.68488 4.74040 4.80852 4.85253 4.92628 4.94500 5.06977 5.18629 5.20996 5.22347 5.35498 5.51547 5.55973 5.59169 5.64935 5.90422 6.39888 6.47626 6.57027 6.63299 6.98144 7.56307 9.06397 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.008619 C = 0.007304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.933699 B = 3247.801919 C = 3832.526702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.043 3.957 3 N -0.522 5.522 4 C 0.060 3.940 5 C 0.018 3.982 6 H 0.140 0.860 7 C -0.131 4.131 8 C 0.243 3.757 9 N -0.490 5.490 10 C 0.100 3.900 11 C -0.007 4.007 12 C -0.437 4.437 13 H 0.040 0.960 14 C 0.017 3.983 15 N -0.956 5.956 16 Si 0.928 3.072 17 H -0.283 1.283 18 H -0.309 1.309 19 H -0.233 1.233 20 C -0.209 4.209 21 C -0.161 4.161 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.257 0.743 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 -4.850 -4.773 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.085 4.085 3 N -0.245 5.245 4 C -0.069 4.069 5 C -0.004 4.004 6 H 0.157 0.843 7 C -0.189 4.189 8 C -0.074 4.074 9 N -0.166 5.166 10 C -0.028 4.028 11 C -0.008 4.008 12 C -0.475 4.475 13 H 0.058 0.942 14 C -0.179 4.179 15 N -0.598 5.598 16 Si 0.756 3.244 17 H -0.209 1.209 18 H -0.237 1.237 19 H -0.156 1.156 20 C -0.247 4.247 21 C -0.199 4.199 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.776 -4.003 -6.148 13.874 hybrid contribution -0.284 0.850 0.994 1.339 sum -12.060 -3.152 -5.154 13.489 Atomic orbital electron populations 1.22391 0.97648 1.02848 1.01732 1.22311 0.93107 0.89683 1.03369 1.61792 1.59586 1.02409 1.00694 1.22078 0.97757 0.98006 0.89068 1.18942 0.95903 1.00836 0.84696 0.84310 1.21640 0.91703 1.02553 1.03029 1.29529 0.91795 0.92149 0.93927 1.81202 1.11233 1.11064 1.13139 1.21677 0.95111 0.96871 0.89137 1.19323 0.93722 0.99307 0.88440 1.20259 0.89982 1.03762 1.33547 0.94209 1.25632 0.94896 1.00706 0.96644 1.70047 1.08094 1.30737 1.50913 0.86072 0.80849 0.78828 0.78673 1.20912 1.23715 1.15632 1.23004 1.01580 1.02123 0.98001 1.22868 1.01498 0.90418 1.05081 0.90944 0.93156 0.92061 0.89408 0.91096 0.92903 0.91437 0.90297 0.91344 0.93380 0.94057 0.93115 0.93381 0.91556 0.88616 0.87952 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.64 9.21 71.98 0.66 -2.98 16 2 C 0.04 1.04 5.62 86.31 0.49 1.53 16 3 N -0.52 -15.61 3.95 -896.21 -3.54 -19.15 16 4 C 0.06 1.49 3.99 86.31 0.34 1.84 16 5 C 0.02 0.38 2.67 -12.60 -0.03 0.35 16 6 H 0.14 2.28 6.30 -2.39 -0.02 2.26 16 7 C -0.13 -3.18 8.98 71.98 0.65 -2.53 16 8 C 0.24 5.98 14.64 89.44 1.31 7.29 16 9 N -0.49 -14.54 18.54 20.00 0.37 -14.17 16 10 C 0.10 3.42 4.57 86.30 0.39 3.81 16 11 C -0.01 -0.27 0.67 -52.93 -0.04 -0.31 16 12 C -0.44 -22.87 9.14 25.60 0.23 -22.63 16 13 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 14 C 0.02 0.92 5.46 84.65 0.46 1.38 16 15 N -0.96 -58.42 13.96 21.45 0.30 -58.12 16 16 Si 0.93 43.54 24.81 68.60 1.70 45.24 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 19 H -0.23 -9.76 5.71 99.48 0.57 -9.19 16 20 C -0.21 -7.93 7.49 30.61 0.23 -7.70 16 21 C -0.16 -5.64 8.36 30.62 0.26 -5.39 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 1.07 6.11 -2.39 -0.01 1.05 16 24 H 0.06 1.08 6.54 -2.39 -0.02 1.06 16 25 H 0.09 1.78 6.39 -2.39 -0.02 1.76 16 26 H 0.07 2.00 5.89 -2.39 -0.01 1.99 16 27 H 0.05 1.15 6.11 -2.39 -0.01 1.14 16 28 H 0.07 1.85 7.88 -2.39 -0.02 1.83 16 29 H 0.08 2.27 7.91 -2.39 -0.02 2.25 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.22 5.85 -2.39 -0.01 1.21 16 33 H 0.05 1.89 6.46 -2.39 -0.02 1.87 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.07 2.79 6.94 -2.38 -0.02 2.78 16 36 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 37 H 0.10 2.91 7.92 -2.38 -0.02 2.89 16 38 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -63.72 299.37 4.69 -59.03 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.90 Total: 12.52 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 4.96 Total: -25.34 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -2.87 Total: -91.45 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.70 Total: 45.24 kcal Total: -63.72 4.69 -59.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.053 kcal (2) G-P(sol) polarization free energy of solvation -63.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds