Wall clock time and date at job start Sun Mar 29 2020 21:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 5 5 C 1.46955 * 111.00152 * 293.79749 * 4 3 2 6 6 C 1.53056 * 109.36311 * 176.81210 * 5 4 3 7 7 N 1.46959 * 109.36372 * 58.40247 * 6 5 4 8 8 C 1.46898 * 110.99735 * 176.80935 * 7 6 5 9 9 C 1.52999 * 109.47364 * 293.79766 * 8 7 6 10 10 C 1.53002 * 109.47475 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47057 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99921 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99639 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99857 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99986 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47295 * 59.99764 * 15 13 11 17 17 H 1.48503 * 109.47236 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47218 * 299.99923 * 15 13 11 19 19 C 1.46955 * 110.88047 * 300.67727 * 7 6 5 20 20 C 1.46959 * 110.99735 * 169.99868 * 4 3 2 21 21 H 4.40879 * 5.52178 * 179.97438 * 4 1 2 22 22 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 23 23 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 24 24 H 1.08996 * 109.48813 * 296.77807 * 5 4 3 25 25 H 1.08997 * 109.48926 * 56.84659 * 5 4 3 26 26 H 1.08995 * 109.48768 * 298.43504 * 6 5 4 27 27 H 1.09001 * 109.48776 * 178.36940 * 6 5 4 28 28 H 1.08993 * 109.47283 * 53.79834 * 8 7 6 29 29 H 1.09003 * 109.46815 * 173.80054 * 8 7 6 30 30 H 1.09004 * 109.47385 * 300.00498 * 9 8 7 31 31 H 1.09003 * 109.46919 * 60.00352 * 9 8 7 32 32 H 1.08996 * 109.46828 * 300.00461 * 10 9 8 33 33 H 1.08993 * 109.46840 * 60.00063 * 10 9 8 34 34 H 0.97002 * 119.99451 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.48813 * 299.35639 * 19 7 6 36 36 H 1.08997 * 109.48926 * 179.28787 * 19 7 6 37 37 H 1.09001 * 109.48967 * 303.15640 * 20 4 3 38 38 H 1.08995 * 109.49013 * 63.22471 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3619 -0.2467 5 6 2.7903 -2.2559 0.8672 6 6 3.2472 -3.6788 0.5367 7 7 4.6966 -3.6810 0.2941 8 6 5.1869 -5.0436 0.0474 9 6 5.0330 -5.8792 1.3198 10 6 5.5442 -7.2983 1.0630 11 6 5.3919 -8.1214 2.3162 12 1 4.9729 -7.6768 3.2067 13 6 5.7886 -9.4419 2.3260 14 7 6.2993 -9.9831 1.2416 15 14 5.6006 -10.4621 3.8794 16 1 4.1679 -10.5150 4.2665 17 1 6.0967 -11.8394 3.6301 18 1 6.3872 -9.8431 4.9764 19 6 5.0426 -2.7871 -0.8198 20 6 4.5856 -1.3642 -0.4894 21 1 -1.0498 -0.0004 0.0001 22 1 3.0090 0.6649 -0.7843 23 1 3.0092 0.3479 0.9672 24 1 3.2886 -1.9155 1.7749 25 1 1.7110 -2.2466 1.0192 26 1 2.7286 -4.0292 -0.3555 27 1 3.0176 -4.3381 1.3738 28 1 4.6089 -5.4976 -0.7575 29 1 6.2384 -5.0054 -0.2372 30 1 5.6110 -5.4253 2.1248 31 1 3.9814 -5.9174 1.6043 32 1 4.9665 -7.7524 0.2580 33 1 6.5957 -7.2597 0.7787 34 1 6.5787 -10.9120 1.2486 35 1 4.5443 -3.1275 -1.7275 36 1 6.1219 -2.7963 -0.9718 37 1 4.8153 -0.7049 -1.3264 38 1 5.1043 -1.0138 0.4029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095975870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:00 Heat of formation + Delta-G solvation = 55.045794 kcal Electronic energy + Delta-G solvation = -16309.929766 eV Core-core repulsion = 13767.551524 eV Total energy + Delta-G solvation = -2542.378242 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36213 -36.32672 -33.85526 -32.84623 -31.27075 -30.86052 -28.47986 -26.12088 -24.17611 -23.59629 -22.11378 -19.93074 -19.68586 -18.33024 -16.52115 -16.01585 -15.42316 -15.01012 -14.98222 -14.53990 -14.31500 -14.12936 -13.62304 -13.24149 -12.83638 -12.23153 -12.21170 -11.64408 -11.34377 -11.25136 -11.08846 -10.96402 -10.75988 -10.57502 -10.46683 -10.41091 -10.28945 -9.56579 -9.29453 -9.03548 -8.55351 -8.31017 -8.03880 -5.96576 -3.98583 2.52262 2.67477 3.35798 3.39782 3.42594 3.88842 4.14400 4.22749 4.49664 4.85169 5.00753 5.10442 5.18791 5.32501 5.39065 5.40513 5.44474 5.55876 5.74177 5.75723 5.80009 5.92160 5.98420 6.07000 6.14333 6.35408 6.72093 6.73744 6.86026 6.86446 7.15566 7.38076 7.42478 7.44903 7.71821 7.87328 8.04105 8.47462 9.08483 9.65154 11.14895 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.043751 B = 0.003999 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.830823 B = 6999.381628 C = 7421.820641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.161 3.839 4 N -0.539 5.539 5 C 0.058 3.942 6 C 0.055 3.945 7 N -0.541 5.541 8 C 0.057 3.943 9 C -0.105 4.105 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.056 3.944 20 C 0.059 3.941 21 H 0.217 0.783 22 H 0.096 0.904 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 19.435 -3.790 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.178 4.178 3 C 0.035 3.965 4 N -0.264 5.264 5 C -0.069 4.069 6 C -0.073 4.073 7 N -0.266 5.266 8 C -0.070 4.070 9 C -0.142 4.142 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.073 4.073 20 C -0.068 4.068 21 H 0.233 0.767 22 H 0.114 0.886 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.577 19.261 -3.865 20.717 hybrid contribution -0.296 -0.678 0.760 1.061 sum -6.873 18.583 -3.105 20.055 Atomic orbital electron populations 1.24880 0.95890 0.99684 1.01458 1.22860 0.94217 1.00717 1.00019 1.18987 0.85193 0.91180 1.01175 1.62147 1.14469 1.07446 1.42342 1.22218 1.00416 0.92702 0.91605 1.22182 0.88084 0.95640 1.01391 1.62249 1.13417 1.10451 1.40486 1.22277 0.99541 0.86303 0.98881 1.21652 1.00406 0.97123 0.95068 1.19067 0.96276 0.89296 0.96914 1.21221 1.41041 0.95677 0.97766 0.92748 1.25029 0.95341 0.97984 0.96163 1.69962 1.42573 1.13509 1.27606 0.86658 0.78455 0.79231 0.83650 1.20272 1.21326 1.20231 1.22128 1.00457 0.91856 0.92848 1.22179 0.86403 0.97531 1.00726 0.76654 0.88588 0.92389 0.93784 0.90496 0.94281 0.89401 0.95236 0.91197 0.92670 0.93503 0.96828 0.96625 0.93000 0.94252 0.90204 0.90341 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 19.25 29.55 0.57 -1.36 16 2 C -0.18 -1.92 12.40 -37.12 -0.46 -2.38 16 3 C 0.16 1.57 5.46 -6.61 -0.04 1.53 16 4 N -0.54 -6.33 4.69 -237.97 -1.12 -7.44 16 5 C 0.06 0.74 5.43 -3.77 -0.02 0.72 16 6 C 0.06 0.81 5.41 -3.76 -0.02 0.79 16 7 N -0.54 -8.39 4.71 -234.47 -1.10 -9.49 16 8 C 0.06 1.02 4.96 -3.83 -0.02 1.00 16 9 C -0.10 -2.22 5.09 -26.73 -0.14 -2.35 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 15 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.06 0.72 5.61 -3.77 -0.02 0.70 16 20 C 0.06 0.64 5.61 -3.76 -0.02 0.62 16 21 H 0.22 1.33 7.80 -54.10 -0.42 0.91 16 22 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 23 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.95 7.20 -51.93 -0.37 0.58 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.35 6.34 -51.93 -0.33 1.02 16 28 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.98 6.49 -51.93 -0.34 0.64 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -31.28 311.60 -9.00 -40.28 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -6.48 Total: -4.33 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.72 Total: -14.04 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -1.48 Total: -43.55 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.28 -9.00 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095975870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.328 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds