Wall clock time and date at job start Sun Mar 29 2020 21:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 5 5 C 1.46955 * 111.00152 * 293.79749 * 4 3 2 6 6 C 1.53056 * 109.36311 * 176.81210 * 5 4 3 7 7 N 1.46959 * 109.36372 * 58.40247 * 6 5 4 8 8 C 1.46898 * 110.99735 * 176.80935 * 7 6 5 9 9 C 1.52999 * 109.47364 * 293.79766 * 8 7 6 10 10 C 1.53002 * 109.47475 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47057 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99921 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99639 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99857 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99986 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47295 * 59.99764 * 15 13 11 17 17 H 1.48503 * 109.47236 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47218 * 299.99923 * 15 13 11 19 19 C 1.46955 * 110.88047 * 300.67727 * 7 6 5 20 20 C 1.46959 * 110.99735 * 169.99868 * 4 3 2 21 21 H 4.40879 * 5.52178 * 179.97438 * 4 1 2 22 22 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 23 23 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 24 24 H 1.08996 * 109.48813 * 296.77807 * 5 4 3 25 25 H 1.08997 * 109.48926 * 56.84659 * 5 4 3 26 26 H 1.08995 * 109.48768 * 298.43504 * 6 5 4 27 27 H 1.09001 * 109.48776 * 178.36940 * 6 5 4 28 28 H 1.08993 * 109.47283 * 53.79834 * 8 7 6 29 29 H 1.09003 * 109.46815 * 173.80054 * 8 7 6 30 30 H 1.09004 * 109.47385 * 300.00498 * 9 8 7 31 31 H 1.09003 * 109.46919 * 60.00352 * 9 8 7 32 32 H 1.08996 * 109.46828 * 300.00461 * 10 9 8 33 33 H 1.08993 * 109.46840 * 60.00063 * 10 9 8 34 34 H 0.97002 * 119.99451 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.48813 * 299.35639 * 19 7 6 36 36 H 1.08997 * 109.48926 * 179.28787 * 19 7 6 37 37 H 1.09001 * 109.48967 * 303.15640 * 20 4 3 38 38 H 1.08995 * 109.49013 * 63.22471 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3619 -0.2467 5 6 2.7903 -2.2559 0.8672 6 6 3.2472 -3.6788 0.5367 7 7 4.6966 -3.6810 0.2941 8 6 5.1869 -5.0436 0.0474 9 6 5.0330 -5.8792 1.3198 10 6 5.5442 -7.2983 1.0630 11 6 5.3919 -8.1214 2.3162 12 1 4.9729 -7.6768 3.2067 13 6 5.7886 -9.4419 2.3260 14 7 6.2993 -9.9831 1.2416 15 14 5.6006 -10.4621 3.8794 16 1 4.1679 -10.5150 4.2665 17 1 6.0967 -11.8394 3.6301 18 1 6.3872 -9.8431 4.9764 19 6 5.0426 -2.7871 -0.8198 20 6 4.5856 -1.3642 -0.4894 21 1 -1.0498 -0.0004 0.0001 22 1 3.0090 0.6649 -0.7843 23 1 3.0092 0.3479 0.9672 24 1 3.2886 -1.9155 1.7749 25 1 1.7110 -2.2466 1.0192 26 1 2.7286 -4.0292 -0.3555 27 1 3.0176 -4.3381 1.3738 28 1 4.6089 -5.4976 -0.7575 29 1 6.2384 -5.0054 -0.2372 30 1 5.6110 -5.4253 2.1248 31 1 3.9814 -5.9174 1.6043 32 1 4.9665 -7.7524 0.2580 33 1 6.5957 -7.2597 0.7787 34 1 6.5787 -10.9120 1.2486 35 1 4.5443 -3.1275 -1.7275 36 1 6.1219 -2.7963 -0.9718 37 1 4.8153 -0.7049 -1.3264 38 1 5.1043 -1.0138 0.4029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095975870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:00 Heat of formation + Delta-G solvation = 34.250881 kcal Electronic energy + Delta-G solvation = -16310.831501 eV Core-core repulsion = 13767.551524 eV Total energy + Delta-G solvation = -2543.279977 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41010 -37.51715 -35.62652 -34.07133 -32.89466 -31.91389 -29.76376 -27.69609 -25.49883 -24.67074 -23.73648 -21.63803 -20.78294 -19.04390 -18.49817 -17.29024 -16.54919 -16.47267 -16.07294 -15.84392 -15.59205 -15.41894 -14.99182 -14.35339 -14.07891 -13.84858 -13.62636 -13.22766 -12.90923 -12.59756 -12.55897 -12.44369 -12.26863 -12.02674 -11.90632 -11.44521 -11.34413 -11.31430 -11.07924 -11.01342 -10.54329 -9.46793 -9.26429 -8.19927 -6.31126 1.39996 1.43405 1.51354 1.76004 1.93910 2.41175 2.92378 3.06649 3.13021 3.53309 3.87138 3.99822 4.13181 4.23220 4.30623 4.39669 4.46773 4.54435 4.56871 4.66504 4.71268 4.81926 4.87808 4.92838 4.96746 5.05741 5.09534 5.14015 5.25977 5.51520 5.73829 5.85627 5.89060 5.94387 6.12096 6.17744 6.27877 6.72654 6.85468 7.38013 8.91903 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.043751 B = 0.003999 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.830823 B = 6999.381628 C = 7421.820641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.214 4.214 3 C 0.162 3.838 4 N -0.550 5.550 5 C 0.068 3.932 6 C 0.056 3.944 7 N -0.545 5.545 8 C 0.069 3.931 9 C -0.089 4.089 10 C 0.026 3.974 11 C -0.544 4.544 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.053 3.947 20 C 0.064 3.936 21 H 0.243 0.757 22 H 0.115 0.885 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.022 0.978 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.048 0.952 32 H -0.011 1.011 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.033 0.967 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 20.763 -3.103 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.214 4.214 3 C 0.036 3.964 4 N -0.276 5.276 5 C -0.060 4.060 6 C -0.072 4.072 7 N -0.270 5.270 8 C -0.059 4.059 9 C -0.126 4.126 10 C -0.011 4.011 11 C -0.582 4.582 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.075 4.075 20 C -0.063 4.063 21 H 0.259 0.741 22 H 0.133 0.867 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.007 0.993 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.143 20.618 -3.181 22.051 hybrid contribution -0.152 -1.064 0.494 1.183 sum -7.295 19.554 -2.687 21.043 Atomic orbital electron populations 1.25670 0.96844 0.98424 1.00433 1.23337 0.95109 1.01892 1.01082 1.19074 0.84869 0.90137 1.02333 1.62125 1.15022 1.08589 1.41826 1.22056 1.00397 0.91565 0.91968 1.22168 0.87590 0.97059 1.00433 1.62212 1.13840 1.09068 1.41843 1.22002 0.99764 0.87483 0.96636 1.21389 0.99963 0.94627 0.96668 1.18961 0.94613 0.92113 0.95430 1.21667 1.41296 0.96587 0.98680 0.92295 1.25999 0.94707 0.99360 0.99819 1.70096 1.43324 1.14037 1.29969 0.85490 0.78954 0.77337 0.79209 1.19179 1.20732 1.19107 1.22254 1.01204 0.92494 0.91559 1.22189 0.85906 0.96318 1.01887 0.74098 0.86704 0.91580 0.93929 0.90307 0.95271 0.90606 0.96018 0.90953 0.92918 0.93367 0.99286 0.98867 0.92739 0.94872 0.89122 0.87656 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.37 19.25 74.32 1.43 -1.94 16 2 C -0.21 -4.24 12.40 31.13 0.39 -3.85 16 3 C 0.16 2.80 5.46 84.50 0.46 3.26 16 4 N -0.55 -11.90 4.69 -906.81 -4.25 -16.15 16 5 C 0.07 1.66 5.43 86.31 0.47 2.13 16 6 C 0.06 1.63 5.41 86.31 0.47 2.09 16 7 N -0.54 -16.54 4.71 -895.72 -4.22 -20.76 16 8 C 0.07 2.48 4.96 86.30 0.43 2.90 16 9 C -0.09 -3.81 5.09 30.59 0.16 -3.65 16 10 C 0.03 1.44 4.97 29.85 0.15 1.59 16 11 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 15 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 C 0.05 1.29 5.61 86.31 0.48 1.77 16 20 C 0.06 1.25 5.61 86.31 0.48 1.73 16 21 H 0.24 2.38 7.80 -4.43 -0.03 2.34 16 22 H 0.12 1.51 8.03 -2.39 -0.02 1.49 16 23 H 0.07 1.03 8.12 -2.39 -0.02 1.02 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.87 7.20 -2.39 -0.02 1.85 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 2.35 6.34 -2.39 -0.02 2.34 16 28 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 29 H 0.07 2.55 8.03 -2.39 -0.02 2.53 16 30 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.05 2.04 6.49 -2.39 -0.02 2.02 16 32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 2.00 8.07 -2.39 -0.02 1.98 16 37 H 0.11 1.50 8.07 -2.39 -0.02 1.48 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -67.08 311.60 0.44 -66.63 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 0.99 Total: 6.05 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 5.61 Total: -25.18 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -8.18 Total: -94.46 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.08 0.44 -66.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095975870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.883 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds