Wall clock time and date at job start Sun Mar 29 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47078 * 269.99843 * 3 2 1 5 5 H 1.48504 * 109.46980 * 29.99822 * 3 2 1 6 6 H 1.48493 * 109.47445 * 150.00005 * 3 2 1 7 7 C 1.38809 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00141 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00119 * 174.05533 * 9 7 2 11 11 C 1.50700 * 115.54954 * 294.83358 * 10 9 7 12 12 C 1.38265 * 119.99246 * 343.03437 * 11 10 9 13 13 C 1.38226 * 120.02853 * 179.72567 * 12 11 10 14 14 C 1.38238 * 120.00870 * 0.27530 * 13 12 11 15 15 C 1.38333 * 119.98635 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 120.00985 * 180.02562 * 15 14 13 17 17 C 1.38195 * 119.99487 * 163.30895 * 11 10 9 18 18 C 1.52997 * 117.49729 * 80.50476 * 10 9 7 19 19 C 1.52998 * 117.49745 * 149.16420 * 10 9 7 20 20 H 0.97008 * 119.99553 * 0.02562 * 1 2 3 21 21 H 0.96999 * 119.99698 * 354.05260 * 9 7 2 22 22 H 1.08003 * 119.99121 * 359.97438 * 12 11 10 23 23 H 1.07993 * 119.99320 * 180.25121 * 13 12 11 24 24 H 1.08002 * 120.00518 * 180.02562 * 14 13 12 25 25 H 1.07995 * 120.00541 * 0.02562 * 17 11 10 26 26 H 1.09005 * 117.49452 * 215.00233 * 18 10 9 27 27 H 1.09003 * 117.50059 * 0.02562 * 18 10 9 28 28 H 1.09002 * 117.50063 * 359.97438 * 19 10 9 29 29 H 1.09001 * 117.49904 * 144.97108 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3795 -1.2023 0.0011 10 6 4.1119 -2.4643 0.1330 11 6 3.9418 -3.1800 1.4483 12 6 3.4420 -2.5018 2.5446 13 6 3.2803 -3.1591 3.7498 14 6 3.6238 -4.4935 3.8611 15 6 4.1288 -5.1711 2.7659 16 17 4.5596 -6.8470 2.9049 17 6 4.2908 -4.5125 1.5599 18 6 4.2717 -3.3230 -1.1231 19 6 5.4746 -2.5655 -0.5553 20 1 -0.4850 0.8401 -0.0004 21 1 3.8646 -0.3668 -0.0860 22 1 3.1739 -1.4592 2.4583 23 1 2.8860 -2.6299 4.6047 24 1 3.4970 -5.0070 4.8027 25 1 4.6858 -5.0408 0.7048 26 1 4.2537 -4.4057 -0.9982 27 1 3.8322 -2.9488 -2.0478 28 1 5.8260 -1.6934 -1.1067 29 1 6.2482 -3.1495 -0.0567 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095985308.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:50 Heat of formation + Delta-G solvation = 58.781210 kcal Electronic energy + Delta-G solvation = -14297.858684 eV Core-core repulsion = 11826.966736 eV Total energy + Delta-G solvation = -2470.891948 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41545 -37.04670 -36.02063 -33.21729 -30.73391 -30.23469 -29.91083 -24.09021 -22.71182 -22.20840 -21.79087 -19.25280 -17.66338 -16.95795 -15.47872 -14.94386 -14.53498 -14.23524 -14.06253 -13.45612 -13.20602 -12.77282 -12.58353 -11.63173 -11.42300 -11.35919 -11.08640 -11.02460 -10.83209 -10.69856 -10.38847 -10.29700 -9.84962 -9.66032 -9.01883 -8.48550 -8.09684 -7.40357 -5.85674 -3.24860 1.57069 1.60616 2.33647 3.30047 3.33284 3.39206 3.90735 4.49524 4.55990 4.87243 5.02650 5.14247 5.31002 5.41474 5.59217 5.68326 5.75213 5.84611 5.98722 6.00787 6.21230 6.34847 6.35956 6.55273 6.65765 6.84166 7.08680 7.24649 7.93273 8.33330 9.10034 9.80965 9.99691 11.31838 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.007284 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.952586 B = 3843.015518 C = 4253.399436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.878 3.122 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.712 5.712 10 C 0.178 3.822 11 C -0.027 4.027 12 C -0.075 4.075 13 C -0.114 4.114 14 C -0.124 4.124 15 C -0.039 4.039 16 Cl -0.089 7.089 17 C -0.116 4.116 18 C -0.186 4.186 19 C -0.179 4.179 20 H 0.261 0.739 21 H 0.367 0.633 22 H 0.141 0.859 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.128 0.872 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.566 -8.097 4.929 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.185 4.185 3 Si 0.707 3.293 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.352 5.352 10 C 0.085 3.915 11 C -0.030 4.030 12 C -0.093 4.093 13 C -0.132 4.132 14 C -0.143 4.143 15 C -0.066 4.066 16 Cl -0.061 7.061 17 C -0.135 4.135 18 C -0.226 4.226 19 C -0.216 4.216 20 H 0.071 0.929 21 H 0.201 0.799 22 H 0.159 0.841 23 H 0.145 0.855 24 H 0.142 0.858 25 H 0.146 0.854 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.318 -8.254 4.954 14.112 hybrid contribution 0.433 1.055 -0.048 1.141 sum 10.752 -7.199 4.906 13.838 Atomic orbital electron populations 1.69698 1.05087 1.25940 1.56643 1.24669 0.95178 0.97031 1.01656 0.86659 0.79417 0.85218 0.77972 1.20983 1.21586 1.20039 1.18984 0.79870 0.94797 1.43611 0.89004 1.42090 1.03865 1.01259 1.87990 1.18417 0.94768 0.89834 0.88497 1.19689 0.96150 0.92006 0.95162 1.21307 0.95174 1.01741 0.91105 1.21127 1.00028 0.93737 0.98306 1.20913 1.00969 0.94910 0.97518 1.20749 1.04897 0.84881 0.96029 1.98330 1.92079 1.17371 1.98298 1.20851 1.02161 0.94387 0.96112 1.23474 1.01466 0.97747 0.99865 1.23214 0.91046 1.03158 1.04225 0.92888 0.79915 0.84147 0.85520 0.85757 0.85390 0.89397 0.88262 0.88800 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.97 55.49 0.78 -27.41 15 2 C 0.01 0.31 5.50 -17.43 -0.10 0.21 15 3 Si 0.88 21.04 27.68 -169.99 -4.71 16.33 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 15 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 6 H -0.27 -6.15 6.61 56.52 0.37 -5.77 15 7 C -0.24 -6.52 9.46 -15.06 -0.14 -6.66 15 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 15 9 N -0.71 -16.04 4.51 -48.31 -0.22 -16.25 15 10 C 0.18 3.38 2.63 -132.97 -0.35 3.03 15 11 C -0.03 -0.50 5.51 -104.63 -0.58 -1.07 15 12 C -0.08 -1.39 9.08 -39.58 -0.36 -1.75 15 13 C -0.11 -1.78 10.05 -39.59 -0.40 -2.18 15 14 C -0.12 -1.82 9.83 -39.55 -0.39 -2.21 15 15 C -0.04 -0.59 6.32 -39.50 -0.25 -0.84 15 16 Cl -0.09 -1.19 28.96 -51.86 -1.50 -2.69 15 17 C -0.12 -1.87 8.89 -39.55 -0.35 -2.22 15 18 C -0.19 -3.13 9.75 -26.69 -0.26 -3.39 15 19 C -0.18 -2.76 9.97 -26.69 -0.27 -3.02 15 20 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 21 H 0.37 8.09 5.97 -40.82 -0.24 7.84 15 22 H 0.14 2.87 7.08 -52.48 -0.37 2.50 15 23 H 0.13 1.69 8.06 -52.49 -0.42 1.26 15 24 H 0.12 1.52 8.06 -52.49 -0.42 1.10 15 25 H 0.13 1.86 6.32 -52.49 -0.33 1.53 15 26 H 0.09 1.32 6.46 -51.93 -0.34 0.99 15 27 H 0.10 1.77 8.14 -51.93 -0.42 1.35 15 28 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 29 H 0.09 1.24 8.13 -51.93 -0.42 0.82 15 LS Contribution 265.64 15.07 4.00 4.00 Total: -1.00 -29.03 265.64 -8.06 -37.09 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -2.98 Total: 9.01 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.44 Total: -20.10 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.56 Total: -43.66 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.03 -8.06 -37.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095985308.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.875 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds