Wall clock time and date at job start Sun Mar 29 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47078 * 269.99843 * 3 2 1 5 5 H 1.48504 * 109.46980 * 29.99822 * 3 2 1 6 6 H 1.48493 * 109.47445 * 150.00005 * 3 2 1 7 7 C 1.38809 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00141 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00119 * 174.05533 * 9 7 2 11 11 C 1.50700 * 115.54954 * 294.83358 * 10 9 7 12 12 C 1.38265 * 119.99246 * 343.03437 * 11 10 9 13 13 C 1.38226 * 120.02853 * 179.72567 * 12 11 10 14 14 C 1.38238 * 120.00870 * 0.27530 * 13 12 11 15 15 C 1.38333 * 119.98635 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 120.00985 * 180.02562 * 15 14 13 17 17 C 1.38195 * 119.99487 * 163.30895 * 11 10 9 18 18 C 1.52997 * 117.49729 * 80.50476 * 10 9 7 19 19 C 1.52998 * 117.49745 * 149.16420 * 10 9 7 20 20 H 0.97008 * 119.99553 * 0.02562 * 1 2 3 21 21 H 0.96999 * 119.99698 * 354.05260 * 9 7 2 22 22 H 1.08003 * 119.99121 * 359.97438 * 12 11 10 23 23 H 1.07993 * 119.99320 * 180.25121 * 13 12 11 24 24 H 1.08002 * 120.00518 * 180.02562 * 14 13 12 25 25 H 1.07995 * 120.00541 * 0.02562 * 17 11 10 26 26 H 1.09005 * 117.49452 * 215.00233 * 18 10 9 27 27 H 1.09003 * 117.50059 * 0.02562 * 18 10 9 28 28 H 1.09002 * 117.50063 * 359.97438 * 19 10 9 29 29 H 1.09001 * 117.49904 * 144.97108 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3795 -1.2023 0.0011 10 6 4.1119 -2.4643 0.1330 11 6 3.9418 -3.1800 1.4483 12 6 3.4420 -2.5018 2.5446 13 6 3.2803 -3.1591 3.7498 14 6 3.6238 -4.4935 3.8611 15 6 4.1288 -5.1711 2.7659 16 17 4.5596 -6.8470 2.9049 17 6 4.2908 -4.5125 1.5599 18 6 4.2717 -3.3230 -1.1231 19 6 5.4746 -2.5655 -0.5553 20 1 -0.4850 0.8401 -0.0004 21 1 3.8646 -0.3668 -0.0860 22 1 3.1739 -1.4592 2.4583 23 1 2.8860 -2.6299 4.6047 24 1 3.4970 -5.0070 4.8027 25 1 4.6858 -5.0408 0.7048 26 1 4.2537 -4.4057 -0.9982 27 1 3.8322 -2.9488 -2.0478 28 1 5.8260 -1.6934 -1.1067 29 1 6.2482 -3.1495 -0.0567 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095985308.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:50 Heat of formation + Delta-G solvation = 42.414613 kcal Electronic energy + Delta-G solvation = -14298.568393 eV Core-core repulsion = 11826.966736 eV Total energy + Delta-G solvation = -2471.601657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73129 -38.38663 -37.20358 -35.13720 -32.55821 -31.50230 -31.32392 -25.92673 -24.17031 -23.52143 -23.09265 -20.70402 -19.69660 -18.29130 -16.92165 -16.30849 -16.14659 -15.72060 -15.50832 -14.74790 -14.72896 -14.41039 -14.14182 -13.28337 -12.99019 -12.64256 -12.62752 -12.33372 -12.26994 -12.10088 -11.86653 -11.84489 -11.73768 -11.22622 -10.87202 -9.73852 -9.55150 -9.18053 -8.01433 -5.37770 0.29626 0.36137 1.16602 1.38478 1.40267 1.48005 2.47659 2.62504 3.13417 3.33598 3.42010 3.67564 3.93646 4.11636 4.26855 4.34175 4.43689 4.55263 4.72514 4.79073 4.87306 5.06544 5.11626 5.29886 5.33710 5.50872 5.72381 5.86258 5.94129 6.22258 7.06701 7.80436 8.00706 9.19943 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.007284 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.952586 B = 3843.015518 C = 4253.399436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.057 4.057 3 Si 0.948 3.052 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.249 1.249 7 C -0.214 4.214 8 H 0.051 0.949 9 N -0.715 5.715 10 C 0.140 3.860 11 C -0.043 4.043 12 C -0.106 4.106 13 C -0.112 4.112 14 C -0.120 4.120 15 C -0.041 4.041 16 Cl -0.068 7.068 17 C -0.117 4.117 18 C -0.185 4.185 19 C -0.146 4.146 20 H 0.257 0.743 21 H 0.370 0.630 22 H 0.111 0.889 23 H 0.147 0.853 24 H 0.153 0.847 25 H 0.144 0.856 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.981 -9.083 5.532 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.249 4.249 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.174 1.174 7 C -0.345 4.345 8 H 0.069 0.931 9 N -0.356 5.356 10 C 0.048 3.952 11 C -0.045 4.045 12 C -0.124 4.124 13 C -0.130 4.130 14 C -0.138 4.138 15 C -0.067 4.067 16 Cl -0.039 7.039 17 C -0.136 4.136 18 C -0.224 4.224 19 C -0.183 4.183 20 H 0.066 0.934 21 H 0.204 0.796 22 H 0.129 0.871 23 H 0.164 0.836 24 H 0.171 0.829 25 H 0.162 0.838 26 H 0.125 0.875 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.800 -9.281 5.557 16.759 hybrid contribution -0.291 1.165 -0.208 1.219 sum 12.510 -8.116 5.348 15.842 Atomic orbital electron populations 1.69883 1.07151 1.26579 1.59584 1.25414 0.95933 1.00859 1.02653 0.85509 0.78839 0.80010 0.78055 1.20610 1.22524 1.17377 1.18752 0.81825 0.92983 1.40894 0.93126 1.41964 1.02296 1.03093 1.88201 1.18799 0.97539 0.89195 0.89683 1.19650 0.97268 0.93045 0.94583 1.21225 0.97442 1.00861 0.92879 1.21335 0.99391 0.94417 0.97901 1.21218 0.99684 0.94364 0.98579 1.20896 1.04070 0.85950 0.95823 1.98340 1.91824 1.15547 1.98227 1.20933 1.02065 0.93487 0.97144 1.23480 1.02318 0.98720 0.97929 1.23332 0.90001 1.02992 1.02010 0.93374 0.79579 0.87071 0.83558 0.82939 0.83817 0.87478 0.89770 0.87900 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.08 13.97 21.65 0.30 -61.78 15 2 C -0.06 -3.28 5.50 84.86 0.47 -2.81 15 3 Si 0.95 44.22 27.68 68.60 1.90 46.12 15 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 15 6 H -0.25 -10.44 6.61 99.48 0.66 -9.78 15 7 C -0.21 -11.81 9.46 84.03 0.79 -11.01 15 8 H 0.05 3.17 8.06 -2.91 -0.02 3.15 15 9 N -0.71 -32.19 4.51 -306.75 -1.38 -33.58 15 10 C 0.14 5.17 2.63 2.85 0.01 5.17 15 11 C -0.04 -1.53 5.51 -19.87 -0.11 -1.64 15 12 C -0.11 -3.92 9.08 22.27 0.20 -3.72 15 13 C -0.11 -3.39 10.05 22.27 0.22 -3.17 15 14 C -0.12 -3.21 9.83 22.29 0.22 -2.99 15 15 C -0.04 -1.13 6.32 22.32 0.14 -0.99 15 16 Cl -0.07 -1.60 28.96 -2.72 -0.08 -1.68 15 17 C -0.12 -3.53 8.89 22.29 0.20 -3.33 15 18 C -0.19 -5.94 9.75 30.62 0.30 -5.64 15 19 C -0.15 -4.08 9.97 30.62 0.31 -3.78 15 20 H 0.26 15.55 8.31 -92.70 -0.77 14.78 15 21 H 0.37 15.94 5.97 -92.71 -0.55 15.38 15 22 H 0.11 4.71 7.08 -2.91 -0.02 4.69 15 23 H 0.15 3.70 8.06 -2.91 -0.02 3.67 15 24 H 0.15 3.18 8.06 -2.91 -0.02 3.16 15 25 H 0.14 3.76 6.32 -2.91 -0.02 3.74 15 26 H 0.11 2.98 6.46 -2.38 -0.02 2.96 15 27 H 0.08 2.95 8.14 -2.39 -0.02 2.93 15 28 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 29 H 0.12 2.72 8.13 -2.39 -0.02 2.70 15 Total: -1.00 -64.44 265.64 4.05 -60.39 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.56 Total: 24.44 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 2.75 Total: -33.91 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -1.08 Total: -95.35 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.12 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -64.44 4.05 -60.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095985308.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.808 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds