Wall clock time and date at job start Sun Mar 29 2020 22:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.46740 * 119.99698 * 247.07960 * 3 2 1 5 5 N 1.34781 * 119.99451 * 102.11238 * 4 3 2 6 6 S 1.71201 * 120.00481 * 282.11266 * 4 3 2 7 7 C 1.37985 * 120.00029 * 67.08924 * 3 2 1 8 8 C 1.51276 * 125.15959 * 358.21793 * 7 3 2 9 9 C 1.54402 * 105.18494 * 182.13153 * 8 7 3 10 10 C 1.54211 * 102.55770 * 15.40295 * 9 8 7 11 11 N 1.35799 * 125.15727 * 178.25772 * 7 3 2 12 12 C 1.36574 * 125.29776 * 339.48054 * 11 7 3 13 13 H 1.07999 * 120.00463 * 332.18603 * 12 11 7 14 14 C 1.39086 * 120.00111 * 152.19223 * 12 11 7 15 15 N 1.31335 * 119.99189 * 335.45598 * 14 12 11 16 16 Si 1.86795 * 120.00429 * 155.45919 * 14 12 11 17 17 H 1.48503 * 109.47044 * 59.99846 * 16 14 12 18 18 H 1.48495 * 109.46859 * 299.99921 * 16 14 12 19 19 H 1.48503 * 109.47237 * 179.97438 * 16 14 12 20 20 H 0.96995 * 120.00027 * 359.97438 * 5 4 3 21 21 H 0.97001 * 119.99560 * 180.02562 * 5 4 3 22 22 H 1.09006 * 110.29982 * 301.05299 * 8 7 3 23 23 H 1.08995 * 110.30601 * 63.10433 * 8 7 3 24 24 H 1.08993 * 110.80583 * 133.85840 * 9 8 7 25 25 H 1.09010 * 110.80234 * 257.36134 * 9 8 7 26 26 H 1.09004 * 110.45290 * 214.52587 * 10 9 8 27 27 H 1.09000 * 110.29340 * 92.08718 * 10 9 8 28 28 H 0.96994 * 120.00832 * 354.02791 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3015 0.4959 1.1705 5 7 3.8509 -0.3755 2.0397 6 16 3.4593 2.1804 1.4321 7 6 3.2582 -0.4643 -1.1007 8 6 2.6235 -1.0343 -2.3500 9 6 3.8064 -1.4558 -3.2484 10 6 4.9933 -1.4515 -2.2638 11 7 4.6103 -0.4802 -1.2265 12 6 5.4789 0.2896 -0.5067 13 1 5.1612 1.2480 -0.1235 14 6 6.7729 -0.1608 -0.2672 15 7 7.0335 -1.4479 -0.2825 16 14 8.1399 1.0650 0.0764 17 1 7.8043 1.8537 1.2891 18 1 8.2875 1.9798 -1.0839 19 1 9.4145 0.3358 0.2978 20 1 3.7611 -1.3299 1.8916 21 1 4.3354 -0.0481 2.8136 22 1 2.0103 -1.9005 -2.1011 23 1 2.0203 -0.2752 -2.8479 24 1 3.6445 -2.4522 -3.6593 25 1 3.9660 -0.7286 -4.0446 26 1 5.9050 -1.1306 -2.7678 27 1 5.1264 -2.4416 -1.8278 28 1 6.3106 -2.0881 -0.3744 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106321648.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:20 Heat of formation + Delta-G solvation = 35.312570 kcal Electronic energy + Delta-G solvation = -14774.711420 eV Core-core repulsion = 12337.138253 eV Total energy + Delta-G solvation = -2437.573168 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.05618 -37.94206 -36.85479 -35.48727 -32.85188 -31.85157 -28.17462 -27.00383 -24.42598 -22.50135 -21.80684 -20.18660 -19.62936 -17.98243 -17.50777 -16.92254 -16.20472 -15.97242 -15.57146 -14.72205 -14.32076 -14.21678 -13.79407 -13.72662 -13.23873 -13.11061 -12.87086 -12.64451 -12.56012 -12.27915 -12.01699 -11.95460 -11.88590 -11.19177 -10.70553 -9.23107 -9.16832 -8.80592 -8.39667 -6.16971 0.05716 0.65308 1.32546 1.55019 1.58256 1.77871 2.00927 2.23730 2.48544 2.68776 2.83598 3.05548 3.52437 3.75320 3.86335 4.03853 4.24010 4.57225 4.65813 4.72118 4.89095 5.05987 5.19331 5.37401 5.60840 5.70571 5.93593 6.16105 6.24824 6.88090 7.02504 7.27243 8.24760 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.012840 C = 0.008977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.689570 B = 2180.187479 C = 3118.229727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C 0.323 3.677 3 C -0.354 4.354 4 C 0.549 3.451 5 N -0.725 5.725 6 S -0.753 6.753 7 C 0.222 3.778 8 C -0.093 4.093 9 C -0.119 4.119 10 C 0.081 3.919 11 N -0.386 5.386 12 C -0.414 4.414 13 H 0.106 0.894 14 C 0.009 3.991 15 N -0.850 5.850 16 Si 1.098 2.902 17 H -0.278 1.278 18 H -0.273 1.273 19 H -0.273 1.273 20 H 0.415 0.585 21 H 0.418 0.582 22 H 0.106 0.894 23 H 0.090 0.910 24 H 0.120 0.880 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.456 -7.429 -4.269 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.216 5.216 2 C 0.015 3.985 3 C -0.379 4.379 4 C 0.285 3.715 5 N -0.251 5.251 6 S -0.621 6.621 7 C 0.083 3.917 8 C -0.131 4.131 9 C -0.157 4.157 10 C -0.041 4.041 11 N -0.060 5.060 12 C -0.542 4.542 13 H 0.124 0.876 14 C -0.202 4.202 15 N -0.479 5.479 16 Si 0.920 3.080 17 H -0.204 1.204 18 H -0.198 1.198 19 H -0.197 1.197 20 H 0.248 0.752 21 H 0.252 0.748 22 H 0.125 0.875 23 H 0.108 0.892 24 H 0.138 0.862 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.946 -6.371 -3.786 7.662 hybrid contribution -0.945 -0.798 0.209 1.254 sum 1.001 -7.169 -3.577 8.074 Atomic orbital electron populations 1.81105 1.12389 1.18336 1.09802 1.24722 0.91197 0.90310 0.92271 1.14030 0.83748 1.42528 0.97554 1.22441 0.74690 0.91572 0.82776 1.43755 1.47120 1.10512 1.23735 1.93043 1.77637 1.04165 1.87268 1.20931 0.84559 0.92452 0.93784 1.21430 0.98625 1.02009 0.91062 1.22589 0.91616 1.04787 0.96694 1.22687 0.99544 0.92717 0.89139 1.43150 1.03143 1.30902 1.28806 1.21259 0.94906 1.01877 1.36187 0.87627 1.27279 1.00278 0.99477 0.93174 1.70847 1.37758 1.01731 1.37541 0.83050 0.73500 0.73334 0.78108 1.20372 1.19842 1.19718 0.75158 0.74808 0.87532 0.89170 0.86176 0.89706 0.91004 0.90400 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -22.89 18.54 19.00 0.35 -22.53 15 2 C 0.32 13.23 14.74 88.33 1.30 14.53 15 3 C -0.35 -13.90 5.46 -19.87 -0.11 -14.01 15 4 C 0.55 22.42 4.20 86.46 0.36 22.78 15 5 N -0.73 -23.29 8.68 -51.17 -0.44 -23.73 15 6 S -0.75 -37.60 29.21 -56.49 -1.65 -39.25 15 7 C 0.22 7.84 6.56 42.07 0.28 8.11 15 8 C -0.09 -2.44 6.07 30.51 0.19 -2.25 15 9 C -0.12 -2.59 7.15 31.48 0.23 -2.36 15 10 C 0.08 2.43 5.46 86.66 0.47 2.91 15 11 N -0.39 -14.39 2.84 -499.08 -1.42 -15.81 15 12 C -0.41 -18.03 7.84 84.16 0.66 -17.37 15 13 H 0.11 5.27 5.35 -2.91 -0.02 5.26 15 14 C 0.01 0.40 5.13 84.97 0.44 0.84 15 15 N -0.85 -36.42 13.05 21.69 0.28 -36.14 15 16 Si 1.10 41.72 29.99 68.60 2.06 43.77 15 17 H -0.28 -10.94 7.11 99.48 0.71 -10.23 15 18 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 19 H -0.27 -10.10 7.11 99.48 0.71 -9.39 15 20 H 0.41 11.08 8.81 -92.71 -0.82 10.26 15 21 H 0.42 12.33 8.81 -92.71 -0.82 11.51 15 22 H 0.11 2.40 8.14 -2.38 -0.02 2.38 15 23 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 25 H 0.08 1.76 8.14 -2.38 -0.02 1.74 15 26 H 0.07 2.34 8.08 -2.39 -0.02 2.32 15 27 H 0.08 2.24 7.03 -2.39 -0.02 2.22 15 28 H 0.28 11.53 6.35 -92.71 -0.59 10.94 15 Total: -1.00 -61.61 263.24 2.76 -58.85 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.23 Total: 21.67 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 3.81 Total: 13.17 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -1.23 Total: -98.21 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.06 Total: 43.77 kcal Atomic # 16 Polarization: -37.60 SS G_CDS: -1.65 Total: -39.25 kcal Total: -61.61 2.76 -58.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106321648.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.160 kcal (2) G-P(sol) polarization free energy of solvation -61.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds