Wall clock time and date at job start Sun Mar 29 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99842 * 2 1 4 4 C 1.53001 * 109.46691 * 163.87298 * 3 2 1 5 5 H 1.08999 * 109.47599 * 57.07598 * 4 3 2 6 6 C 1.47201 * 109.47238 * 297.06676 * 4 3 2 7 7 N 3.63463 * 127.85538 * 81.10248 * 2 1 3 8 8 C 1.53006 * 109.46849 * 177.07152 * 4 3 2 9 9 C 1.50695 * 109.47355 * 184.99921 * 8 4 3 10 10 H 1.08009 * 119.99656 * 0.02562 * 9 8 4 11 11 C 1.37871 * 120.00307 * 179.72349 * 9 8 4 12 12 N 1.31514 * 119.99852 * 0.27843 * 11 9 8 13 13 Si 1.86805 * 120.00184 * 180.27548 * 11 9 8 14 14 H 1.48493 * 109.47114 * 90.00108 * 13 11 9 15 15 H 1.48502 * 109.46901 * 210.00189 * 13 11 9 16 16 H 1.48498 * 109.46792 * 329.99927 * 13 11 9 17 17 C 1.46897 * 110.99723 * 236.04391 * 2 1 3 18 18 C 1.53000 * 109.47488 * 293.95021 * 17 2 1 19 19 C 1.53775 * 113.61706 * 274.14111 * 18 17 2 20 20 C 1.53960 * 87.01818 * 220.04674 * 19 18 17 21 21 C 1.53776 * 87.11170 * 25.36169 * 20 19 18 22 22 H 1.09002 * 109.47063 * 66.20100 * 1 2 3 23 23 H 1.09003 * 109.46682 * 186.19941 * 1 2 3 24 24 H 1.08998 * 109.47471 * 306.19917 * 1 2 3 25 25 H 1.09003 * 109.47195 * 43.87146 * 3 2 1 26 26 H 1.09003 * 109.46810 * 283.86737 * 3 2 1 27 27 H 1.08999 * 109.47206 * 64.99410 * 8 4 3 28 28 H 1.09002 * 109.46828 * 304.99838 * 8 4 3 29 29 H 0.97000 * 119.99952 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.47595 * 53.95521 * 17 2 1 31 31 H 1.09000 * 109.46918 * 173.95427 * 17 2 1 32 32 H 1.08998 * 112.84582 * 45.33995 * 18 17 2 33 33 H 1.08995 * 113.61414 * 334.56271 * 19 18 17 34 34 H 1.09002 * 113.61492 * 105.46835 * 19 18 17 35 35 H 1.09001 * 113.53673 * 270.81068 * 20 19 18 36 36 H 1.09000 * 113.66214 * 139.93477 * 20 19 18 37 37 H 1.08995 * 113.61584 * 220.08717 * 21 20 19 38 38 H 1.09007 * 113.69023 * 89.19910 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4719 1.3509 0.4007 5 1 4.0245 0.7044 -0.2811 6 6 3.6004 0.8390 1.7748 7 7 3.6995 0.4439 2.8352 8 6 4.0393 2.7701 0.3301 9 6 5.5205 2.7332 0.6049 10 1 6.0085 1.7916 0.8091 11 6 6.2538 3.9007 0.5896 12 7 5.6596 5.0472 0.3405 13 14 8.0913 3.8540 0.9227 14 1 8.8218 3.6706 -0.3570 15 1 8.5123 5.1302 1.5547 16 1 8.4003 2.7241 1.8354 17 6 1.9954 -0.7660 -1.1376 18 6 1.6315 -2.2427 -0.9703 19 6 2.6368 -3.0318 -0.1151 20 6 2.4614 -4.1864 -1.1183 21 6 2.0650 -3.1220 -2.1550 22 1 -0.3633 0.4147 -0.9403 23 1 -0.3633 -1.0217 0.1110 24 1 -0.3634 0.6069 0.8293 25 1 1.4340 1.9761 0.7122 26 1 1.8957 1.7989 -0.9978 27 1 3.5470 3.3957 1.0747 28 1 3.8643 3.1823 -0.6637 29 1 6.1754 5.8686 0.3301 30 1 1.5611 -0.3874 -2.0628 31 1 3.0797 -0.6612 -1.1756 32 1 0.5935 -2.3917 -0.6728 33 1 3.6391 -2.6037 -0.1131 34 1 2.2720 -3.2627 0.8858 35 1 1.6507 -4.8679 -0.8604 36 1 3.3907 -4.7036 -1.3569 37 1 1.2394 -3.4255 -2.7987 38 1 2.9099 -2.7178 -2.7127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112560558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:41 Heat of formation + Delta-G solvation = 32.158011 kcal Electronic energy + Delta-G solvation = -16679.679129 eV Core-core repulsion = 14136.308398 eV Total energy + Delta-G solvation = -2543.370731 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25524 -37.36972 -35.41492 -33.54085 -31.66970 -28.54578 -27.41288 -25.56675 -24.91788 -23.11374 -21.70632 -20.89778 -19.32905 -16.77335 -16.44543 -15.77611 -15.27335 -14.90221 -14.53855 -14.40523 -13.74864 -13.28738 -12.92590 -12.58731 -12.40087 -12.35201 -11.97758 -11.85922 -11.63478 -11.52526 -11.18609 -11.18271 -11.03478 -10.64934 -10.55559 -10.43146 -10.21965 -10.19302 -10.00308 -9.49973 -9.20201 -8.44345 -8.11628 -6.08291 -4.11237 3.29964 3.36915 3.41899 3.79620 3.89517 4.03490 4.42462 4.65177 4.71985 4.78811 4.94016 4.97226 5.29884 5.32057 5.33029 5.43376 5.54932 5.66073 5.69859 5.75299 5.80117 5.86042 5.86746 5.96781 6.01229 6.08591 6.12395 6.30457 6.40619 6.49814 6.58728 7.22561 7.25173 7.44522 7.55235 7.87161 8.25147 8.65294 8.93595 9.54157 11.02673 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.005685 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.496987 B = 4924.171832 C = 5263.994529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.061 3.939 4 C 0.012 3.988 5 H 0.098 0.902 6 C 0.259 3.741 7 N -0.481 5.481 8 C 0.031 3.969 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.060 3.940 18 C -0.105 4.105 19 C -0.127 4.127 20 C -0.146 4.146 21 C -0.137 4.137 22 H 0.023 0.977 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.036 0.964 29 H 0.262 0.738 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 -12.311 -6.681 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.067 4.067 4 C -0.010 4.010 5 H 0.115 0.885 6 C -0.058 4.058 7 N -0.158 5.158 8 C -0.008 4.008 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.719 3.281 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.067 4.067 18 C -0.123 4.123 19 C -0.164 4.164 20 C -0.183 4.183 21 C -0.175 4.175 22 H 0.042 0.958 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.350 -12.942 -4.659 16.632 hybrid contribution 0.736 0.689 -0.963 1.394 sum -8.614 -12.252 -5.622 15.998 Atomic orbital electron populations 1.22379 0.87879 1.01823 1.00181 1.61987 1.07378 1.14174 1.43205 1.22250 0.95017 0.88475 1.01001 1.19220 0.95171 1.01415 0.85218 0.88466 1.28812 0.91154 0.91255 0.94602 1.80965 1.10485 1.11517 1.12868 1.19175 0.95951 0.86952 0.98707 1.21141 0.92927 0.93519 1.48712 0.92528 1.24948 0.98571 0.95459 0.94973 1.69939 1.35993 0.98066 1.49093 0.86600 0.85447 0.77581 0.78522 1.20496 1.21145 1.19832 1.22232 1.00806 0.92608 0.91103 1.22548 0.99662 0.93404 0.96729 1.22882 0.99764 0.95943 0.97804 1.22860 1.01255 0.96612 0.97569 1.22926 1.01158 0.97103 0.96288 0.95810 0.91649 0.91626 0.90339 0.92889 0.95594 0.94532 0.92824 0.94744 0.90060 0.89406 0.90020 0.91750 0.90673 0.91721 0.91923 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.32 60.07 0.56 0.85 16 2 N -0.54 -7.49 4.36 -242.91 -1.06 -8.55 16 3 C 0.06 0.94 4.36 -3.82 -0.02 0.92 16 4 C 0.01 0.22 2.22 -93.40 -0.21 0.01 16 5 H 0.10 1.73 6.52 -51.93 -0.34 1.40 16 6 C 0.26 5.52 13.62 -20.76 -0.28 5.24 16 7 N -0.48 -11.13 18.54 42.15 0.78 -10.35 16 8 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 9 C -0.52 -14.08 8.60 -34.44 -0.30 -14.37 16 10 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 13 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.06 0.74 4.63 -3.83 -0.02 0.72 16 18 C -0.10 -1.14 3.68 -89.81 -0.33 -1.48 16 19 C -0.13 -1.49 7.65 -25.83 -0.20 -1.68 16 20 C -0.15 -1.41 8.09 -25.83 -0.21 -1.61 16 21 C -0.14 -1.30 7.65 -25.92 -0.20 -1.50 16 22 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 23 H 0.06 0.68 6.39 -51.93 -0.33 0.35 16 24 H 0.06 0.75 7.95 -51.93 -0.41 0.34 16 25 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 26 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 31 H 0.08 1.07 6.10 -51.93 -0.32 0.75 16 32 H 0.09 0.94 6.33 -51.93 -0.33 0.61 16 33 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -29.70 312.93 -7.56 -37.26 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -6.30 Total: -3.88 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.42 Total: -10.67 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.46 Total: -43.81 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.70 -7.56 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112560558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.420 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds