Wall clock time and date at job start Sun Mar 29 2020 22:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99842 * 2 1 4 4 C 1.53001 * 109.46691 * 163.87298 * 3 2 1 5 5 H 1.08999 * 109.47599 * 57.07598 * 4 3 2 6 6 C 1.47201 * 109.47238 * 297.06676 * 4 3 2 7 7 N 3.63463 * 127.85538 * 81.10248 * 2 1 3 8 8 C 1.53006 * 109.46849 * 177.07152 * 4 3 2 9 9 C 1.50695 * 109.47355 * 184.99921 * 8 4 3 10 10 H 1.08009 * 119.99656 * 0.02562 * 9 8 4 11 11 C 1.37871 * 120.00307 * 179.72349 * 9 8 4 12 12 N 1.31514 * 119.99852 * 0.27843 * 11 9 8 13 13 Si 1.86805 * 120.00184 * 180.27548 * 11 9 8 14 14 H 1.48493 * 109.47114 * 90.00108 * 13 11 9 15 15 H 1.48502 * 109.46901 * 210.00189 * 13 11 9 16 16 H 1.48498 * 109.46792 * 329.99927 * 13 11 9 17 17 C 1.46897 * 110.99723 * 236.04391 * 2 1 3 18 18 C 1.53000 * 109.47488 * 293.95021 * 17 2 1 19 19 C 1.53775 * 113.61706 * 274.14111 * 18 17 2 20 20 C 1.53960 * 87.01818 * 220.04674 * 19 18 17 21 21 C 1.53776 * 87.11170 * 25.36169 * 20 19 18 22 22 H 1.09002 * 109.47063 * 66.20100 * 1 2 3 23 23 H 1.09003 * 109.46682 * 186.19941 * 1 2 3 24 24 H 1.08998 * 109.47471 * 306.19917 * 1 2 3 25 25 H 1.09003 * 109.47195 * 43.87146 * 3 2 1 26 26 H 1.09003 * 109.46810 * 283.86737 * 3 2 1 27 27 H 1.08999 * 109.47206 * 64.99410 * 8 4 3 28 28 H 1.09002 * 109.46828 * 304.99838 * 8 4 3 29 29 H 0.97000 * 119.99952 * 179.97438 * 12 11 9 30 30 H 1.08994 * 109.47595 * 53.95521 * 17 2 1 31 31 H 1.09000 * 109.46918 * 173.95427 * 17 2 1 32 32 H 1.08998 * 112.84582 * 45.33995 * 18 17 2 33 33 H 1.08995 * 113.61414 * 334.56271 * 19 18 17 34 34 H 1.09002 * 113.61492 * 105.46835 * 19 18 17 35 35 H 1.09001 * 113.53673 * 270.81068 * 20 19 18 36 36 H 1.09000 * 113.66214 * 139.93477 * 20 19 18 37 37 H 1.08995 * 113.61584 * 220.08717 * 21 20 19 38 38 H 1.09007 * 113.69023 * 89.19910 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4719 1.3509 0.4007 5 1 4.0245 0.7044 -0.2811 6 6 3.6004 0.8390 1.7748 7 7 3.6995 0.4439 2.8352 8 6 4.0393 2.7701 0.3301 9 6 5.5205 2.7332 0.6049 10 1 6.0085 1.7916 0.8091 11 6 6.2538 3.9007 0.5896 12 7 5.6596 5.0472 0.3405 13 14 8.0913 3.8540 0.9227 14 1 8.8218 3.6706 -0.3570 15 1 8.5123 5.1302 1.5547 16 1 8.4003 2.7241 1.8354 17 6 1.9954 -0.7660 -1.1376 18 6 1.6315 -2.2427 -0.9703 19 6 2.6368 -3.0318 -0.1151 20 6 2.4614 -4.1864 -1.1183 21 6 2.0650 -3.1220 -2.1550 22 1 -0.3633 0.4147 -0.9403 23 1 -0.3633 -1.0217 0.1110 24 1 -0.3634 0.6069 0.8293 25 1 1.4340 1.9761 0.7122 26 1 1.8957 1.7989 -0.9978 27 1 3.5470 3.3957 1.0747 28 1 3.8643 3.1823 -0.6637 29 1 6.1754 5.8686 0.3301 30 1 1.5611 -0.3874 -2.0628 31 1 3.0797 -0.6612 -1.1756 32 1 0.5935 -2.3917 -0.6728 33 1 3.6391 -2.6037 -0.1131 34 1 2.2720 -3.2627 0.8858 35 1 1.6507 -4.8679 -0.8604 36 1 3.3907 -4.7036 -1.3569 37 1 1.2394 -3.4255 -2.7987 38 1 2.9099 -2.7178 -2.7127 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112560558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:40 Heat of formation + Delta-G solvation = 15.576174 kcal Electronic energy + Delta-G solvation = -16680.398171 eV Core-core repulsion = 14136.308398 eV Total energy + Delta-G solvation = -2544.089773 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.20346 -38.65178 -36.88084 -35.44545 -33.45752 -29.57651 -28.92439 -26.43274 -26.29526 -24.30603 -23.52024 -21.94698 -20.17334 -18.51936 -18.21886 -16.76766 -16.67145 -16.23678 -15.84491 -15.55540 -15.04973 -14.52144 -14.42965 -14.19115 -13.73641 -13.58586 -13.24719 -13.21545 -13.02617 -12.80496 -12.71383 -12.61152 -12.44340 -12.32931 -12.13160 -11.75612 -11.43495 -11.33449 -11.08573 -11.00351 -10.92021 -10.54799 -9.14675 -8.19494 -6.27796 1.39938 1.41978 1.51370 2.08487 2.16493 2.41532 2.98282 3.15955 3.38103 3.81331 3.89074 3.89926 4.08362 4.19213 4.32670 4.44062 4.58067 4.64344 4.70384 4.80728 4.81978 4.91775 4.93547 4.96384 4.99634 5.06788 5.14249 5.18414 5.20600 5.46110 5.47421 5.61288 5.70439 5.79136 6.10953 6.23965 6.25925 6.83212 6.95029 7.40795 8.91477 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.005685 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.496987 B = 4924.171832 C = 5263.994529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.559 5.559 3 C 0.071 3.929 4 C 0.023 3.977 5 H 0.111 0.889 6 C 0.268 3.732 7 N -0.515 5.515 8 C 0.038 3.962 9 C -0.539 4.539 10 H 0.052 0.948 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.948 3.052 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.277 1.277 17 C 0.060 3.940 18 C -0.102 4.102 19 C -0.138 4.138 20 C -0.138 4.138 21 C -0.129 4.129 22 H 0.037 0.963 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.001 0.999 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 -13.341 -7.881 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.283 5.283 3 C -0.058 4.058 4 C 0.001 3.999 5 H 0.129 0.871 6 C -0.048 4.048 7 N -0.192 5.192 8 C -0.001 4.001 9 C -0.577 4.577 10 H 0.070 0.930 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.774 3.226 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.202 1.202 17 C -0.068 4.068 18 C -0.120 4.120 19 C -0.175 4.175 20 C -0.176 4.176 21 C -0.167 4.167 22 H 0.056 0.944 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.020 0.980 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.824 -13.985 -5.868 18.070 hybrid contribution 0.863 0.995 -0.571 1.435 sum -8.960 -12.991 -6.439 17.044 Atomic orbital electron populations 1.22410 0.86173 1.02692 1.00826 1.61929 1.08979 1.13064 1.44350 1.22069 0.92280 0.89833 1.01618 1.19172 0.97916 0.98648 0.84199 0.87128 1.29300 0.90081 0.90488 0.94913 1.80958 1.11783 1.12608 1.13900 1.18993 0.94281 0.89243 0.97568 1.21530 0.94782 0.93289 1.48109 0.92986 1.25699 1.02611 0.95308 0.95020 1.70031 1.37481 0.98585 1.50201 0.85694 0.80882 0.77284 0.78722 1.19074 1.20905 1.20189 1.22265 1.00100 0.93289 0.91113 1.22554 0.99628 0.92555 0.97286 1.22899 0.99156 0.97637 0.97827 1.22848 1.01883 0.96246 0.96584 1.22890 1.01625 0.96238 0.95927 0.94417 0.90485 0.91893 0.90624 0.91303 0.98034 0.94709 0.92685 0.93455 0.91296 0.88732 0.91682 0.93096 0.89563 0.91355 0.90342 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.32 127.69 1.19 1.74 16 2 N -0.56 -14.46 4.36 -922.44 -4.02 -18.48 16 3 C 0.07 2.08 4.36 86.30 0.38 2.46 16 4 C 0.02 0.84 2.22 -12.60 -0.03 0.81 16 5 H 0.11 3.85 6.52 -2.39 -0.02 3.83 16 6 C 0.27 11.45 13.62 89.44 1.22 12.67 16 7 N -0.51 -23.92 18.54 20.01 0.37 -23.55 16 8 C 0.04 1.78 4.42 29.85 0.13 1.91 16 9 C -0.54 -28.94 8.60 25.60 0.22 -28.72 16 10 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 11 C 0.01 0.69 5.46 84.65 0.46 1.16 16 12 N -0.92 -53.24 13.29 21.45 0.28 -52.96 16 13 Si 0.95 43.73 29.54 68.60 2.03 45.75 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 17 C 0.06 1.35 4.63 86.30 0.40 1.75 16 18 C -0.10 -2.02 3.68 -10.27 -0.04 -2.06 16 19 C -0.14 -3.12 7.65 31.18 0.24 -2.88 16 20 C -0.14 -2.40 8.09 31.18 0.25 -2.15 16 21 C -0.13 -2.12 7.65 31.12 0.24 -1.88 16 22 H 0.04 0.68 8.12 -2.39 -0.02 0.66 16 23 H 0.08 1.41 6.39 -2.39 -0.02 1.39 16 24 H 0.06 1.32 7.95 -2.39 -0.02 1.31 16 25 H 0.08 2.26 7.86 -2.39 -0.02 2.24 16 26 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 27 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.05 0.96 8.11 -2.39 -0.02 0.94 16 31 H 0.07 1.72 6.10 -2.39 -0.01 1.70 16 32 H 0.09 1.77 6.33 -2.39 -0.02 1.75 16 33 H 0.06 1.67 7.92 -2.39 -0.02 1.65 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.36 8.10 -2.38 -0.02 1.34 16 Total: -1.00 -62.54 312.93 4.34 -58.20 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.02 Total: 6.24 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 4.66 Total: -15.20 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -3.37 Total: -94.99 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -62.54 4.34 -58.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112560558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.780 kcal (2) G-P(sol) polarization free energy of solvation -62.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds