Wall clock time and date at job start Sun Mar 29 2020 22:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 111.00103 * 2 1 4 4 C 1.52999 * 109.46872 * 199.47936 * 3 2 1 5 5 H 1.08995 * 109.47791 * 305.30544 * 4 3 2 6 6 C 1.47197 * 109.46986 * 65.30567 * 4 3 2 7 7 N 3.66942 * 124.20532 * 281.41877 * 2 1 3 8 8 C 1.53002 * 109.46989 * 185.30210 * 4 3 2 9 9 C 1.50703 * 109.47022 * 175.00084 * 8 4 3 10 10 H 1.07992 * 120.00050 * 0.02562 * 9 8 4 11 11 C 1.37876 * 119.99771 * 180.02562 * 9 8 4 12 12 N 1.31516 * 120.00135 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00326 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47207 * 89.99950 * 13 11 9 15 15 H 1.48502 * 109.47368 * 210.00418 * 13 11 9 16 16 H 1.48503 * 109.46824 * 330.00048 * 13 11 9 17 17 C 1.46905 * 110.99641 * 123.95340 * 2 1 3 18 18 C 1.53007 * 109.46915 * 66.04708 * 17 2 1 19 19 C 1.53779 * 113.61116 * 274.13319 * 18 17 2 20 20 C 1.53956 * 87.01957 * 220.05040 * 19 18 17 21 21 C 1.53773 * 113.61060 * 176.52623 * 18 17 2 22 22 H 1.09004 * 109.46654 * 53.46032 * 1 2 3 23 23 H 1.08993 * 109.47202 * 173.45961 * 1 2 3 24 24 H 1.09002 * 109.47111 * 293.46797 * 1 2 3 25 25 H 1.08997 * 109.46822 * 79.48612 * 3 2 1 26 26 H 1.08998 * 109.47231 * 319.48165 * 3 2 1 27 27 H 1.09000 * 109.47333 * 295.00149 * 8 4 3 28 28 H 1.08998 * 109.47217 * 55.00458 * 8 4 3 29 29 H 0.96996 * 120.00742 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.47050 * 186.04374 * 17 2 1 31 31 H 1.09001 * 109.47297 * 306.04669 * 17 2 1 32 32 H 1.08998 * 112.84698 * 45.32762 * 18 17 2 33 33 H 1.08998 * 113.61962 * 334.57246 * 19 18 17 34 34 H 1.09004 * 113.60953 * 105.47096 * 19 18 17 35 35 H 1.09000 * 113.53603 * 270.81346 * 20 19 18 36 36 H 1.08990 * 113.66586 * 139.93590 * 20 19 18 37 37 H 1.09000 * 113.61652 * 254.52698 * 21 18 17 38 38 H 1.09002 * 113.61954 * 25.35235 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4479 1.3601 -0.4810 5 1 4.0275 0.6676 0.1293 6 6 3.4952 0.9315 -1.8884 7 7 3.5318 0.6008 -2.9746 8 6 4.0374 2.7664 -0.3561 9 6 5.5012 2.7310 -0.7130 10 1 5.9644 1.7988 -1.0006 11 6 6.2488 3.8887 -0.6723 12 7 7.5261 3.8579 -0.9842 13 14 5.4477 5.5010 -0.1741 14 1 5.5563 5.6740 1.2968 15 1 6.1344 6.6268 -0.8570 16 1 4.0155 5.4839 -0.5662 17 6 1.9954 -0.7660 1.1377 18 6 1.6314 -2.2427 0.9703 19 6 0.2386 -2.5994 1.5160 20 6 0.8686 -3.8992 2.0488 21 6 2.2104 -3.1482 2.0700 22 1 -0.3633 0.6119 -0.8257 23 1 -0.3633 -1.0209 -0.1170 24 1 -0.3633 0.4093 0.9427 25 1 1.9506 1.7778 1.0104 26 1 1.3964 1.9906 -0.6676 27 1 3.5145 3.4412 -1.0337 28 1 3.9218 3.1191 0.6688 29 1 8.0521 4.6724 -0.9560 30 1 3.0797 -0.6612 1.1757 31 1 1.5610 -0.3873 2.0629 32 1 1.8123 -2.6114 -0.0393 33 1 -0.1077 -1.9280 2.3018 34 1 -0.5069 -2.7615 0.7375 35 1 0.8398 -4.7216 1.3340 36 1 0.5121 -4.1845 3.0384 37 1 3.0545 -3.7529 1.7382 38 1 2.4057 -2.6269 3.0072 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112560559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:43 Heat of formation + Delta-G solvation = 36.364374 kcal Electronic energy + Delta-G solvation = -16619.684930 eV Core-core repulsion = 14076.496601 eV Total energy + Delta-G solvation = -2543.188329 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.43104 -37.43892 -35.44246 -33.54843 -31.80449 -28.72408 -27.89473 -25.72327 -24.93506 -23.12780 -21.42412 -20.91640 -19.45634 -16.92427 -16.86052 -15.79373 -15.47458 -15.19649 -14.35255 -14.27001 -13.77485 -13.26070 -13.16763 -12.60995 -12.50664 -12.39287 -12.14219 -12.03474 -11.95136 -11.72850 -11.35004 -11.27507 -11.15259 -10.68512 -10.61411 -10.38871 -10.24983 -10.14932 -9.86586 -9.70049 -9.29921 -8.60397 -8.21231 -6.09194 -4.09625 3.26354 3.35378 3.36426 3.74092 3.83079 3.98718 4.39427 4.53923 4.60850 4.68467 4.80087 4.85083 5.24918 5.26432 5.30326 5.41326 5.46180 5.55679 5.61589 5.62881 5.69247 5.77468 5.82003 5.86691 5.90742 5.97406 6.02371 6.18907 6.24130 6.33903 6.45907 6.94123 7.11957 7.15886 7.21621 7.65734 8.42717 8.59960 8.94877 9.50760 11.03999 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.032726 B = 0.005267 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.372391 B = 5315.160104 C = 5368.400949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.058 3.942 4 C 0.022 3.978 5 H 0.104 0.896 6 C 0.256 3.744 7 N -0.474 5.474 8 C -0.006 4.006 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.264 1.264 17 C 0.060 3.940 18 C -0.103 4.103 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.137 4.137 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.022 0.978 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.032 0.968 29 H 0.264 0.736 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 -9.782 8.991 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.071 4.071 4 C 0.000 4.000 5 H 0.122 0.878 6 C -0.061 4.061 7 N -0.151 5.151 8 C -0.045 4.045 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.704 3.296 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.068 4.068 18 C -0.122 4.122 19 C -0.176 4.176 20 C -0.181 4.181 21 C -0.175 4.175 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.856 -10.395 6.895 19.398 hybrid contribution -0.458 1.482 1.384 2.079 sum -15.314 -8.913 8.279 19.558 Atomic orbital electron populations 1.22477 0.87689 1.02359 0.99917 1.61985 1.07576 1.13935 1.43202 1.22276 0.95218 0.88891 1.00672 1.18954 0.95449 1.01009 0.84576 0.87805 1.28694 0.91326 0.91526 0.94594 1.80988 1.10249 1.10946 1.12929 1.19647 0.97462 0.89685 0.97692 1.21033 0.91821 0.96814 1.46777 0.90777 1.24988 0.94647 0.98920 0.94534 1.69904 1.06691 1.28530 1.48441 0.86824 0.80184 0.83636 0.78957 1.20076 1.21309 1.18870 1.22226 1.00903 0.92635 0.90997 1.22551 0.95821 0.94398 0.99447 1.23101 0.96854 0.97392 1.00233 1.22834 0.97172 0.97029 1.01045 1.22910 0.97095 0.98288 0.99178 0.91878 0.91047 0.95915 0.92803 0.90431 0.95708 0.95032 0.92585 0.89959 0.94665 0.88495 0.90481 0.91645 0.90410 0.91815 0.91409 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.88 60.07 0.53 0.79 16 2 N -0.54 -7.14 4.40 -242.91 -1.07 -8.21 16 3 C 0.06 0.83 4.36 -3.82 -0.02 0.82 16 4 C 0.02 0.40 2.26 -93.41 -0.21 0.19 16 5 H 0.10 1.82 6.64 -51.93 -0.34 1.47 16 6 C 0.26 5.42 13.67 -20.76 -0.28 5.13 16 7 N -0.47 -11.00 18.54 42.15 0.78 -10.22 16 8 C -0.01 -0.13 3.49 -27.88 -0.10 -0.22 16 9 C -0.53 -14.30 9.15 -34.44 -0.32 -14.62 16 10 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 13 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 17 C 0.06 0.70 4.70 -3.82 -0.02 0.68 16 18 C -0.10 -1.08 3.49 -89.81 -0.31 -1.39 16 19 C -0.14 -1.22 5.91 -25.83 -0.15 -1.37 16 20 C -0.14 -1.19 8.09 -25.82 -0.21 -1.40 16 21 C -0.14 -1.26 7.65 -25.92 -0.20 -1.46 16 22 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 23 H 0.07 0.72 5.46 -51.93 -0.28 0.44 16 24 H 0.02 0.22 8.12 -51.93 -0.42 -0.20 16 25 H 0.05 0.69 8.00 -51.93 -0.42 0.27 16 26 H 0.08 1.10 7.79 -51.93 -0.40 0.69 16 27 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 28 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.08 1.03 6.55 -51.93 -0.34 0.69 16 31 H 0.04 0.38 7.84 -51.93 -0.41 -0.03 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 34 H 0.06 0.56 7.24 -51.93 -0.38 0.19 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 307.29 15.07 4.63 4.63 Total: -1.00 -30.89 307.29 -7.20 -38.10 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.27 Total: -2.97 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -1.38 Total: -10.94 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.49 Total: -44.88 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.89 -7.20 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112560559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.460 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds