Wall clock time and date at job start Sun Mar 29 2020 22:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 111.00103 * 2 1 4 4 C 1.52999 * 109.46872 * 199.47936 * 3 2 1 5 5 H 1.08995 * 109.47791 * 305.30544 * 4 3 2 6 6 C 1.47197 * 109.46986 * 65.30567 * 4 3 2 7 7 N 3.66942 * 124.20532 * 281.41877 * 2 1 3 8 8 C 1.53002 * 109.46989 * 185.30210 * 4 3 2 9 9 C 1.50703 * 109.47022 * 175.00084 * 8 4 3 10 10 H 1.07992 * 120.00050 * 0.02562 * 9 8 4 11 11 C 1.37876 * 119.99771 * 180.02562 * 9 8 4 12 12 N 1.31516 * 120.00135 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00326 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47207 * 89.99950 * 13 11 9 15 15 H 1.48502 * 109.47368 * 210.00418 * 13 11 9 16 16 H 1.48503 * 109.46824 * 330.00048 * 13 11 9 17 17 C 1.46905 * 110.99641 * 123.95340 * 2 1 3 18 18 C 1.53007 * 109.46915 * 66.04708 * 17 2 1 19 19 C 1.53779 * 113.61116 * 274.13319 * 18 17 2 20 20 C 1.53956 * 87.01957 * 220.05040 * 19 18 17 21 21 C 1.53773 * 113.61060 * 176.52623 * 18 17 2 22 22 H 1.09004 * 109.46654 * 53.46032 * 1 2 3 23 23 H 1.08993 * 109.47202 * 173.45961 * 1 2 3 24 24 H 1.09002 * 109.47111 * 293.46797 * 1 2 3 25 25 H 1.08997 * 109.46822 * 79.48612 * 3 2 1 26 26 H 1.08998 * 109.47231 * 319.48165 * 3 2 1 27 27 H 1.09000 * 109.47333 * 295.00149 * 8 4 3 28 28 H 1.08998 * 109.47217 * 55.00458 * 8 4 3 29 29 H 0.96996 * 120.00742 * 179.97438 * 12 11 9 30 30 H 1.08997 * 109.47050 * 186.04374 * 17 2 1 31 31 H 1.09001 * 109.47297 * 306.04669 * 17 2 1 32 32 H 1.08998 * 112.84698 * 45.32762 * 18 17 2 33 33 H 1.08998 * 113.61962 * 334.57246 * 19 18 17 34 34 H 1.09004 * 113.60953 * 105.47096 * 19 18 17 35 35 H 1.09000 * 113.53603 * 270.81346 * 20 19 18 36 36 H 1.08990 * 113.66586 * 139.93590 * 20 19 18 37 37 H 1.09000 * 113.61652 * 254.52698 * 21 18 17 38 38 H 1.09002 * 113.61954 * 25.35235 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4479 1.3601 -0.4810 5 1 4.0275 0.6676 0.1293 6 6 3.4952 0.9315 -1.8884 7 7 3.5318 0.6008 -2.9746 8 6 4.0374 2.7664 -0.3561 9 6 5.5012 2.7310 -0.7130 10 1 5.9644 1.7988 -1.0006 11 6 6.2488 3.8887 -0.6723 12 7 7.5261 3.8579 -0.9842 13 14 5.4477 5.5010 -0.1741 14 1 5.5563 5.6740 1.2968 15 1 6.1344 6.6268 -0.8570 16 1 4.0155 5.4839 -0.5662 17 6 1.9954 -0.7660 1.1377 18 6 1.6314 -2.2427 0.9703 19 6 0.2386 -2.5994 1.5160 20 6 0.8686 -3.8992 2.0488 21 6 2.2104 -3.1482 2.0700 22 1 -0.3633 0.6119 -0.8257 23 1 -0.3633 -1.0209 -0.1170 24 1 -0.3633 0.4093 0.9427 25 1 1.9506 1.7778 1.0104 26 1 1.3964 1.9906 -0.6676 27 1 3.5145 3.4412 -1.0337 28 1 3.9218 3.1191 0.6688 29 1 8.0521 4.6724 -0.9560 30 1 3.0797 -0.6612 1.1757 31 1 1.5610 -0.3873 2.0629 32 1 1.8123 -2.6114 -0.0393 33 1 -0.1077 -1.9280 2.3018 34 1 -0.5069 -2.7615 0.7375 35 1 0.8398 -4.7216 1.3340 36 1 0.5121 -4.1845 3.0384 37 1 3.0545 -3.7529 1.7382 38 1 2.4057 -2.6269 3.0072 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112560559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:42 Heat of formation + Delta-G solvation = 17.320011 kcal Electronic energy + Delta-G solvation = -16620.510756 eV Core-core repulsion = 14076.496601 eV Total energy + Delta-G solvation = -2544.014155 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28131 -38.67369 -36.84255 -35.39159 -33.63653 -29.75681 -29.26571 -26.66465 -25.97752 -24.20761 -23.24274 -21.90237 -20.19673 -18.89824 -18.34323 -16.78781 -16.65037 -16.12913 -15.95391 -15.43111 -15.04756 -14.77565 -14.37866 -14.18320 -13.85759 -13.48769 -13.34579 -13.22689 -13.09896 -12.87945 -12.73350 -12.57640 -12.45183 -12.19085 -11.89833 -11.63149 -11.56096 -11.34678 -11.24247 -10.94975 -10.85431 -10.72317 -9.15647 -8.24043 -6.29842 1.42663 1.46077 1.56371 2.06077 2.13919 2.41722 2.99669 3.12550 3.34535 3.78960 3.87257 3.91800 4.05175 4.18692 4.32861 4.44935 4.56291 4.64967 4.67188 4.76842 4.80985 4.88898 4.93080 4.93835 5.02189 5.10750 5.12211 5.14603 5.23326 5.27014 5.44276 5.45954 5.64219 5.69606 6.15748 6.27849 6.29014 6.77595 6.91712 7.34642 8.93086 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.032726 B = 0.005267 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.372391 B = 5315.160104 C = 5368.400949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.563 5.563 3 C 0.068 3.932 4 C 0.027 3.973 5 H 0.108 0.892 6 C 0.265 3.735 7 N -0.518 5.518 8 C -0.003 4.003 9 C -0.531 4.531 10 H 0.027 0.973 11 C 0.003 3.997 12 N -0.955 5.955 13 Si 0.950 3.050 14 H -0.256 1.256 15 H -0.295 1.295 16 H -0.237 1.237 17 C 0.061 3.939 18 C -0.109 4.109 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.137 4.137 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.028 0.972 28 H 0.062 0.938 29 H 0.265 0.735 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.947 -9.028 11.021 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.287 5.287 3 C -0.061 4.061 4 C 0.005 3.995 5 H 0.126 0.874 6 C -0.051 4.051 7 N -0.195 5.195 8 C -0.042 4.042 9 C -0.569 4.569 10 H 0.045 0.955 11 C -0.193 4.193 12 N -0.595 5.595 13 Si 0.772 3.228 14 H -0.181 1.181 15 H -0.221 1.221 16 H -0.160 1.160 17 C -0.066 4.066 18 C -0.128 4.128 19 C -0.167 4.167 20 C -0.176 4.176 21 C -0.175 4.175 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.609 -9.668 8.935 21.986 hybrid contribution 0.458 1.132 0.716 1.415 sum -17.151 -8.536 9.651 21.452 Atomic orbital electron populations 1.22487 0.86043 1.02925 1.00700 1.61902 1.09123 1.13337 1.44335 1.22141 0.92096 0.89997 1.01867 1.19064 0.98546 0.99065 0.82850 0.87380 1.29412 0.89947 0.90527 0.95189 1.80980 1.11912 1.12260 1.14392 1.19590 0.93639 0.91839 0.99105 1.21393 0.94833 0.94973 1.45740 0.95491 1.26047 0.95062 1.03541 0.94673 1.70091 1.08875 1.29735 1.50847 0.85673 0.80175 0.77539 0.79393 1.18073 1.22149 1.16043 1.22241 1.00088 0.93124 0.91189 1.22510 0.97586 0.93884 0.98790 1.23061 0.95757 0.97575 1.00333 1.22820 0.96264 0.96841 1.01706 1.22936 0.97470 0.98168 0.98956 0.92081 0.90453 0.94255 0.90273 0.89939 0.95414 0.92012 0.92645 0.91416 0.93092 0.90604 0.89551 0.91450 0.90409 0.90622 0.92055 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 8.88 127.69 1.13 1.62 16 2 N -0.56 -13.52 4.40 -922.43 -4.06 -17.58 16 3 C 0.07 1.74 4.36 86.30 0.38 2.12 16 4 C 0.03 0.93 2.26 -12.60 -0.03 0.91 16 5 H 0.11 3.71 6.64 -2.39 -0.02 3.70 16 6 C 0.27 11.25 13.67 89.44 1.22 12.47 16 7 N -0.52 -24.40 18.54 20.01 0.37 -24.03 16 8 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 9 C -0.53 -29.13 9.15 25.60 0.23 -28.89 16 10 H 0.03 1.68 7.84 -2.91 -0.02 1.65 16 11 C 0.00 0.19 5.47 84.65 0.46 0.65 16 12 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 13 Si 0.95 41.65 27.47 68.60 1.88 43.53 16 14 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 15 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 17 C 0.06 1.30 4.70 86.30 0.41 1.70 16 18 C -0.11 -2.12 3.49 -10.27 -0.04 -2.16 16 19 C -0.13 -1.97 5.91 31.18 0.18 -1.78 16 20 C -0.14 -2.02 8.09 31.18 0.25 -1.76 16 21 C -0.14 -2.33 7.65 31.12 0.24 -2.09 16 22 H 0.06 1.18 7.92 -2.38 -0.02 1.16 16 23 H 0.08 1.37 5.46 -2.39 -0.01 1.35 16 24 H 0.04 0.62 8.12 -2.39 -0.02 0.60 16 25 H 0.08 1.66 8.00 -2.39 -0.02 1.65 16 26 H 0.08 2.05 7.79 -2.39 -0.02 2.03 16 27 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 28 H 0.06 2.22 7.57 -2.39 -0.02 2.21 16 29 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.07 1.61 6.55 -2.39 -0.02 1.60 16 31 H 0.05 0.93 7.84 -2.39 -0.02 0.91 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 1.17 7.92 -2.39 -0.02 1.15 16 34 H 0.07 1.00 7.24 -2.38 -0.02 0.98 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.36 8.10 -2.39 -0.02 1.34 16 Total: -1.00 -68.51 307.29 4.01 -64.50 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.96 Total: 10.08 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.55 Total: -17.23 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.39 Total: -100.89 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.53 kcal Total: -68.51 4.01 -64.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112560559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.819 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds