Wall clock time and date at job start Sun Mar 29 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47260 * 2 1 4 4 C 1.46901 * 110.99902 * 60.57711 * 3 2 1 5 5 C 1.52995 * 109.47222 * 66.04614 * 4 3 2 6 6 H 1.08994 * 109.47465 * 304.99879 * 5 4 3 7 7 C 1.47204 * 109.46905 * 65.00024 * 5 4 3 8 8 N 4.43039 * 137.24852 * 51.65257 * 2 1 3 9 9 C 1.53005 * 109.47448 * 184.99924 * 5 4 3 10 10 C 1.50690 * 109.47380 * 175.00143 * 9 5 4 11 11 H 1.08005 * 120.00107 * 0.02562 * 10 9 5 12 12 C 1.37871 * 120.00239 * 180.02562 * 10 9 5 13 13 N 1.31519 * 120.00248 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00344 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47098 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47376 * 119.99657 * 14 12 10 17 17 H 1.48505 * 109.47052 * 239.99873 * 14 12 10 18 18 C 1.46904 * 111.00056 * 296.62829 * 3 2 1 19 19 C 1.53004 * 109.46858 * 288.03598 * 18 3 2 20 20 C 1.52997 * 117.49930 * 245.76672 * 19 18 3 21 21 C 1.52995 * 117.49929 * 177.10460 * 19 18 3 22 22 H 1.09004 * 109.46763 * 60.36145 * 1 2 3 23 23 H 1.09003 * 109.46974 * 180.36021 * 1 2 3 24 24 H 1.09002 * 109.47198 * 300.35929 * 1 2 3 25 25 H 1.09002 * 109.47480 * 240.00112 * 2 1 3 26 26 H 1.09004 * 109.47147 * 119.99824 * 2 1 3 27 27 H 1.09003 * 109.47418 * 306.04975 * 4 3 2 28 28 H 1.09004 * 109.47331 * 186.05043 * 4 3 2 29 29 H 1.08997 * 109.46651 * 55.00153 * 9 5 4 30 30 H 1.09005 * 109.47108 * 295.00481 * 9 5 4 31 31 H 0.96993 * 120.00364 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.47133 * 48.02946 * 18 3 2 33 33 H 1.08997 * 109.47257 * 168.03820 * 18 3 2 34 34 H 1.08999 * 115.54622 * 31.43006 * 19 18 3 35 35 H 1.09005 * 117.49593 * 359.97438 * 20 19 18 36 36 H 1.08998 * 117.50397 * 145.01419 * 20 19 18 37 37 H 1.09003 * 117.49412 * 214.97982 * 21 19 18 38 38 H 1.08998 * 117.50068 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5600 2.1059 1.1946 5 6 2.2035 1.4923 2.4396 6 1 1.9918 0.4235 2.4688 7 6 3.6596 1.7031 2.3939 8 7 4.7833 1.8659 2.3586 9 6 1.6306 2.1600 3.6915 10 6 2.1715 1.4736 4.9191 11 1 2.8559 0.6443 4.8168 12 6 1.7929 1.9041 6.1729 13 7 0.9599 2.9142 6.2977 14 14 2.4640 1.0537 7.6948 15 1 3.3758 -0.0449 7.2863 16 1 3.2105 2.0355 8.5218 17 1 1.3387 0.4941 8.4859 18 6 1.6157 2.0863 -1.2260 19 6 2.4248 1.5517 -2.4094 20 6 3.3992 2.5143 -3.0914 21 6 2.1016 2.1110 -3.7964 22 1 -0.3633 0.5082 -0.8933 23 1 -0.3633 -1.0277 0.0065 24 1 -0.3634 0.5194 0.8868 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.4754 2.0287 1.2707 28 1 1.8450 3.1552 1.1178 29 1 0.5436 2.0808 3.6802 30 1 1.9182 3.2113 3.7065 31 1 0.6938 3.2174 7.1798 32 1 0.5538 1.9193 -1.4069 33 1 1.8014 3.1542 -1.1117 34 1 2.7157 0.5032 -2.3447 35 1 3.4634 3.5285 -2.6971 36 1 4.3308 2.0991 -3.4757 37 1 2.1802 1.4304 -4.6442 38 1 1.3123 2.8594 -3.8658 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112560590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:50 Heat of formation + Delta-G solvation = 41.371036 kcal Electronic energy + Delta-G solvation = -16633.975949 eV Core-core repulsion = 14091.004725 eV Total energy + Delta-G solvation = -2542.971224 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.97061 -36.94405 -35.48934 -33.56055 -31.74643 -30.05394 -27.55037 -25.38042 -24.11003 -22.42381 -21.88299 -21.02430 -19.56805 -16.83606 -16.56235 -16.03761 -15.37428 -15.04513 -14.56225 -14.05173 -13.92875 -13.38966 -12.90089 -12.56862 -12.33101 -12.24041 -11.97105 -11.75998 -11.60499 -11.51736 -11.22690 -11.10060 -11.00613 -10.77875 -10.65670 -10.52878 -10.34107 -10.10588 -9.90703 -9.50016 -9.18434 -8.45033 -8.06689 -6.08787 -4.11654 3.29043 3.37347 3.42138 3.66540 3.79670 3.88977 4.11296 4.42505 4.69207 4.88115 4.90655 5.02770 5.18461 5.24342 5.29553 5.41048 5.46394 5.48557 5.54658 5.59916 5.76177 5.77933 5.84304 5.93144 6.01482 6.04356 6.14831 6.24657 6.33986 6.46761 6.54532 7.24245 7.25568 7.44068 7.54828 7.86937 8.24746 8.63821 8.93478 9.53889 11.02215 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038094 B = 0.005195 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.848149 B = 5388.194958 C = 5641.796719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 N -0.537 5.537 4 C 0.058 3.942 5 C 0.011 3.989 6 H 0.100 0.900 7 C 0.257 3.743 8 N -0.481 5.481 9 C 0.031 3.969 10 C -0.524 4.524 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.081 3.919 19 C -0.139 4.139 20 C -0.176 4.176 21 C -0.186 4.186 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -3.208 -16.465 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.084 4.084 3 N -0.259 5.259 4 C -0.070 4.070 5 C -0.011 4.011 6 H 0.118 0.882 7 C -0.060 4.060 8 N -0.158 5.158 9 C -0.008 4.008 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.047 4.047 19 C -0.158 4.158 20 C -0.213 4.213 21 C -0.223 4.223 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.198 -2.865 -16.372 16.664 hybrid contribution -0.972 -0.443 0.943 1.424 sum -2.170 -3.308 -15.430 15.929 Atomic orbital electron populations 1.22437 0.98294 1.02373 1.02286 1.22226 0.92918 0.90400 1.02809 1.62199 1.59736 1.02337 1.01671 1.22293 0.98358 0.98150 0.88247 1.19233 0.82189 1.02652 0.97036 0.88244 1.28849 0.94764 0.92035 0.90356 1.80969 1.13347 1.10044 1.11400 1.19174 0.96748 0.96239 0.88594 1.21181 1.27683 1.16651 0.90728 0.92458 1.24948 0.94918 0.94948 0.99138 1.69947 1.33559 1.26026 1.23562 0.86549 0.78889 0.79683 0.83049 1.19655 1.20964 1.20878 1.21702 0.96633 0.97883 0.88472 1.22248 1.02282 0.99162 0.92080 1.22979 0.93816 1.00281 1.04216 1.22966 0.99733 1.03985 0.95633 0.92693 0.92207 0.91506 0.91057 0.90071 0.92404 0.90462 0.94523 0.95611 0.92878 0.93703 0.90973 0.87649 0.88883 0.89161 0.89106 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 9.28 37.16 0.34 -1.75 16 2 C 0.04 0.53 5.70 -3.82 -0.02 0.51 16 3 N -0.54 -7.27 4.37 -234.62 -1.02 -8.30 16 4 C 0.06 0.88 4.08 -3.83 -0.02 0.86 16 5 C 0.01 0.20 2.13 -93.40 -0.20 0.00 16 6 H 0.10 1.75 6.32 -51.93 -0.33 1.43 16 7 C 0.26 5.48 13.67 -20.76 -0.28 5.20 16 8 N -0.48 -11.14 18.54 42.15 0.78 -10.36 16 9 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 10 C -0.52 -14.01 8.60 -34.45 -0.30 -14.31 16 11 H 0.06 1.53 7.59 -52.48 -0.40 1.14 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 14 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.08 0.94 5.12 -3.82 -0.02 0.92 16 19 C -0.14 -1.50 5.71 -90.62 -0.52 -2.02 16 20 C -0.18 -1.82 10.18 -26.69 -0.27 -2.10 16 21 C -0.19 -1.68 10.25 -26.70 -0.27 -1.95 16 22 H 0.05 0.55 6.27 -51.93 -0.33 0.23 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.79 6.27 -51.93 -0.33 0.46 16 25 H 0.07 0.78 6.61 -51.93 -0.34 0.44 16 26 H 0.08 1.05 6.35 -51.93 -0.33 0.72 16 27 H 0.06 0.81 6.01 -51.93 -0.31 0.50 16 28 H 0.08 1.19 7.86 -51.93 -0.41 0.78 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 0.48 5.90 -51.93 -0.31 0.17 16 33 H 0.07 0.85 7.55 -51.93 -0.39 0.46 16 34 H 0.11 1.17 6.75 -51.93 -0.35 0.82 16 35 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 310.33 15.07 4.68 4.68 Total: -1.00 -29.68 310.33 -7.53 -37.21 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.91 Total: -2.32 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -1.77 Total: -12.42 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.49 Total: -43.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.68 -7.53 -37.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112560590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.582 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds